Ssin036483.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940881.1:80827665-80829431[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.033 5.4 8.8 0.4 1 23 67 90 67 90 0.94 2 13 0.0012 0.19 13.4 2.9 1 21 148 168 148 169 0.93 3 13 0.00096 0.16 13.6 7.4 1 21 255 275 255 276 0.94 4 13 7.2 1.2e+03 1.5 0.9 14 23 299 308 290 308 0.65 5 13 0.0073 1.2 10.9 4.6 1 23 329 351 329 351 0.94 6 13 0.7 1.2e+02 4.6 0.8 2 12 366 376 365 382 0.81 7 13 3.5e-05 0.0057 18.2 1.3 1 23 393 415 393 415 0.99 8 13 1.1e-05 0.0019 19.7 3.7 1 23 421 443 421 443 0.98 9 13 1.4e-05 0.0023 19.5 2.2 3 23 451 471 449 471 0.98 10 13 7.3e-05 0.012 17.2 0.0 1 23 477 499 477 499 0.98 11 13 0.00033 0.055 15.1 0.2 2 23 506 527 505 527 0.93 12 13 9e-07 0.00015 23.2 0.9 1 23 533 555 533 555 0.98 13 13 1.7e-05 0.0028 19.1 0.1 1 23 561 583 561 583 0.98
Sequence Information
- Coding Sequence
- ATGTCGGCCCCTTGTAGGAGAGATTCACTTTCCTTGCGAAGTGAATCAATTTCCACTGATACAGAAAATATCAGCAATGAGCAACAAGAGGAAACAATTGTCAAAAAGGAAATAGCAGACGATATGTTTGGTGGACTTGATGGTCACGCAAAAACAAAGTGTGGGGAAATTTTCGCCTCCTACGTCGGAGGATTGACGTTCCTGTGTGCCTTTTGCAATGAGGAATTCAAAACTCTTAACTTGTTCGGTGATCATATTCAGAAAGACCATAGATGCCAAATAGTTTGGTCACATTTTGATACTGAGATGCATGCAGCAGAAGTTAACATCTTTCCAACCAAAGTGGAACCTGAAGAGTGCATTTCGGAGAAAGACGACAACTTTCGGGAAATCAACTCGGCAGAGAAAGAAGCCTTCaagcaaaatgaaatatttggaaaacaCAATTGTAATATGTGCAATCAACACTTTAAATCAAGGAGCGGCTTGGATAGGCATCAAACATCTAGGAGGTGTCGTAGCAAATCGCAACCCAGGAATAGCGAAAATAATACTGCAGCAGATAAGCCTGATATGCTtataaaaagtagaaattgTTTAGATAACGAAACAAATGTTTTGTATCGCAGGTCAGATGGCAGTGAAACTGGGTCAGACAACCAAGCAAACGACCCCAAAGGTAGAAGTGAAAGCGAGTCCGACGATACCAACGATGGGAGTTTCAGTGTACCTGAATCAGAAAATGAGGCAGCCACACGAACATTTTCTTGTGATAATTGTCACCgtacattcaaatacaaacatAGTCTCACTAGACATAAGCAACATCCACTAGGGTGTAGTATACAGTCCAGTCTTTTTTGTGTTCCATGTAACCGGCAGCTGGGCTGCAGACGAACTTTTCAGCGCCATCAGAATCGCCACGCTCTTGAAGACAACACGAAACACAAAAAGGAGTttgacgaaaaaaatgaaacgacAGAATTTCATTGTGAACTTTGCAATACTTATTTCAAAACGAAGCATATGTTACAAATCCACTCGGACGTCCACGATACACTACCAGCTGCGTTGTTAGataatttagattttttgaaGTGCAAGTACTGTAATAAGCAATACGAAAAATTTGCCAACCGTAAACAGTGTGAAAGTACGCATTCAGGCACTCGACCGTACGAGTGTCCGTATTGTAGCAAAAGTTTTCTGTCAAACTACGATCGAAAAGTCCATATTCGTACACACACAGgtgaaaatgttttccaatGTCCTCATTGTCCTAAAGTATGCACAAACAGCACAGACATGAAACGACACGTTGAAAGGCACTCAAATGTACGAAAGTTTGGATGCGATTTATGCGAGAAACGTTTCTATCGGCGATTCGAAATGACGCGACACATGAGAACTCATACGAAAGAACGACCGTACGTATGCGAAGATTGCGGTGCAACATATCCTGTTTTAGCACAACTTAAAGATCATCAACTGCGACACACTGGCGTGAAGAATATTAAATGTGAAATATGTGGGCGATTATTCTATTCGAGGAGTGTTTTAAAAGTTCACATGCCAACACACTTTGATGAAAAGCCATTTGAATGCGATGTTTGTGGCCGGAAGTTCTCACGAGTGAAGGCCCTACAAAAACATCAGAAACTTCATTCGGGCATAAAGAAATATGTATGTAACATTTGTGGCAAGGCTTATGCACAGGACTCAGGGCTATATGCTCATAAGAAATCACATGGGGCAAATATTTCCTAG
- Protein Sequence
- MSAPCRRDSLSLRSESISTDTENISNEQQEETIVKKEIADDMFGGLDGHAKTKCGEIFASYVGGLTFLCAFCNEEFKTLNLFGDHIQKDHRCQIVWSHFDTEMHAAEVNIFPTKVEPEECISEKDDNFREINSAEKEAFKQNEIFGKHNCNMCNQHFKSRSGLDRHQTSRRCRSKSQPRNSENNTAADKPDMLIKSRNCLDNETNVLYRRSDGSETGSDNQANDPKGRSESESDDTNDGSFSVPESENEAATRTFSCDNCHRTFKYKHSLTRHKQHPLGCSIQSSLFCVPCNRQLGCRRTFQRHQNRHALEDNTKHKKEFDEKNETTEFHCELCNTYFKTKHMLQIHSDVHDTLPAALLDNLDFLKCKYCNKQYEKFANRKQCESTHSGTRPYECPYCSKSFLSNYDRKVHIRTHTGENVFQCPHCPKVCTNSTDMKRHVERHSNVRKFGCDLCEKRFYRRFEMTRHMRTHTKERPYVCEDCGATYPVLAQLKDHQLRHTGVKNIKCEICGRLFYSRSVLKVHMPTHFDEKPFECDVCGRKFSRVKALQKHQKLHSGIKKYVCNICGKAYAQDSGLYAHKKSHGANIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -