Ssin020041.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stratiomys singularior
Gene Symbol
-
Assembly
GCA_954870665.1
Location
OX940879.1:4460133-4465531[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.021 3.5 9.4 0.1 1 23 232 255 232 255 0.97
2 16 0.0012 0.19 13.4 1.2 1 23 300 323 300 323 0.97
3 16 0.0001 0.017 16.7 0.0 2 23 390 412 389 412 0.96
4 16 0.00024 0.04 15.5 2.3 1 23 423 445 423 445 0.98
5 16 0.13 22 6.9 8.6 1 23 451 474 451 474 0.95
6 16 4.5e-05 0.0075 17.8 5.3 1 23 501 523 501 523 0.98
7 16 0.04 6.6 8.5 1.5 1 23 529 552 529 552 0.94
8 16 2e-05 0.0034 18.9 1.5 1 23 563 585 563 585 0.99
9 16 0.00034 0.056 15.1 1.7 1 23 591 613 591 613 0.95
10 16 0.0077 1.3 10.8 0.1 1 23 618 641 618 641 0.94
11 16 0.043 7.2 8.4 0.2 2 23 652 673 651 673 0.93
12 16 9.6e-05 0.016 16.8 2.6 1 23 679 702 679 702 0.98
13 16 7.2e-05 0.012 17.2 2.0 1 23 709 731 709 731 0.99
14 16 0.12 20 7.0 0.1 1 23 737 760 737 760 0.92
15 16 0.00094 0.16 13.7 2.3 1 23 770 792 770 792 0.97
16 16 0.011 1.8 10.3 1.6 1 23 798 821 798 821 0.93

Sequence Information

Coding Sequence
ATGCTACCCGGAGAAATTTGTCGAGCATGTTTAACAACAAATGGCACAATGTTTAATCTGTTCGGTCCAGATGGCCTGCAATTGGACCCGGGCAAAGAAACAGTAGCCGATTTCATGGGATTGTTGACAAGATCATTGcTCGAAGAAGATGATGGTCTGGCAACAAAAATCTGTCAAACATGTTATTTTGAGGTCCAACGTGCATACATATTTAAAACAAAGTGTGAACGCTCATTAGCCGTTTTAACCCAGTtgagaaatgttaaaataaaaattagaaaactcaAATCGGATAACAATTCGGATACGTGTCGAAAAAAACCAAAGATGTTTGTCAACGGTCTATCGCAAAACAAAAGATCGGATAGTGAACAAAATATAATATCTCTAGCATCAAGTGAAGCCGATACGATAGAATTTGATGcaatcaatatatttaataagaaaaatacaCCTTCTACAACCAAATATGTGGAATTTTTAGATGATCCATTAAATTTGATAGAGTTCGACCAATTGGGCGGAGCGTCGCAAATTCTGACCAACAACGACATCGATTTCGATGGGATAGTAATAAAGCAAGAAGTTGATTCTGATGTAGCGAGCACAATGGATGACGACAATGCGCATACATTTGAGGACAGCCTGATGCAAAATAATACAGCCGTTGGTAACACAGCAGAGGAGCAGAATTTCGAATGTCCTGCTTGTCCATACGTGCACATTTCATCAGATGGACTAGAAAAGCATATgataaaaaatcatatgaatgaaaatatgtgCTCAATTTGCAGCAAAGACATAAGTGGCAACGAAAAAGAACATTTCGCCCGACATATTGGGCCGCATTTAGATTATGACGAAATCATCGAGGGAACAACGTTAATAGGTGGTGACTATCAGTGTTCGTTATGTCCCCAACATTTCAAATTGCGCATCGATCTGGAGAATCATCGTGAAAAAGCGCACACCGGTCAAAGCAAATCAAAGCGTTATTCTTCTCCGACCCCTGATGCAGCTGTTGAGAACACCAGTCTGGCTAAAACGGAGGACTTATTCAATGCCATCATTGAGGAAACGCTTGACGACTATCCAATGCAAACACCCACATCCGTATATACGGATGTTAAGGATAGCAATAGACCTCCGCTCATGAGTCGCTTAGTTCGATGTGATGTCTGTGAAAAATCTTTTGTTAATGAAGAAGAATTAAATCTGCATGTGAACATTATACATGCAACAAAAAACGCAAATGGACAATCCGTCTTCAAATGCACTCAGTGCACACAGTCGTACACTGATAAAACGACTTTCATTGATCACATTAAGTTGCATGAAACGGGTAAACCTTATCGATGTGAAACATGCCAGCAAACGTTCCGGTTTAAACATAATTTAGATTGCCATATGCGTTTCAAACACTGTATCGAATGTAAAGGCTTGAAAACAGCGAACTGCAGCAAATGTTTCATAAAAGTGAGTGACAAAAACGTGAAAACCTTTGAATGCGATCTGTGTCATAAAGTGCTGTCGAATAAATCAAGTCTGCATCGACACAAGCGAATGCATTTGCAAGAAAAACCATTCAAGTGCGACTTGTGCTCGCAGAGCttcaattataaacaaattttaaatttgcacgTGAAAGAGAAACATGGGCAAGATGCCGCCAAGTGTGATCCCGAATACAAATGCAAATCTTGCTCGATGGTTTTCTCACGAAGACTAGAGCTTATTATGCATATGAAAACTCATGACACAAATAAATTGCATACGTGTCAATACTGTCCGAAATCTTTCGAATTATATAGCATGTTGGTTCGACACACTGAAGAGCACAAGATCAATGGCTTTGAATGTGGCGATTGCTTGGAAAAATTCTCGACCGAAGATGGTATCAGGGCGCATATCTCAGAGAAACATAATAATGCAGTCAGCCAAGAAGAAACATTGAAATGTATTGAATGTAGCTTGGAATTCACTGATCAGAATCTGCTCGACGAACATGTCCGGTCCCACGTCAATGACAAACCTTTTGAGTGCgatatttgtaagcaaactTTCCGATACACACAAAGTCTGGCCCGGCATAAGAAAACATATCATACAAAACAGCTACAAGTGTACCAATGTCAGCTATGTCCGCTAAGTTTCCATGATCGATCCGACTTGGTTAATCACTTTAGGAGCCATACTGTCGAGAAAACTTTCGAATGCGAAGTATGCGCGGAGAAATTCCCCGACAAATTGAGGCTGGGCGCGCATATGGTCCTAAAACATGACGCGAAGAGCGTGCAGAAACAATGCTTCAAATGCGAACACTGTTCGAAAACATTTTGGAACAAGAGCCTCTACGAATCTCATGTGGAGATACATTCAACGGAAAATACATATTCGTGCGAACTATGCAATCAAGTGTTCCGGTCCGGGCAACTTTTTAAGcagcactttgaaaaaaatcatcaaggTGAGATCGCTGAACTACTTCCACAGATTACACAGCCGTGTGAGCTGCCAAACGATACGATTTTGCTTATCAACAACACAAATATAGTGTATGAAAACAGCACGAGTGACAACAATTTTGTATTTGGAGATGCGTTTCTCAACAGCGATCAGATGATTGGCATGCAGGCAGCTGAATCAATGATGAATGAACTGTTTGACGAGTCAAGTATTGAAGTTGCATAA
Protein Sequence
MLPGEICRACLTTNGTMFNLFGPDGLQLDPGKETVADFMGLLTRSLLEEDDGLATKICQTCYFEVQRAYIFKTKCERSLAVLTQLRNVKIKIRKLKSDNNSDTCRKKPKMFVNGLSQNKRSDSEQNIISLASSEADTIEFDAINIFNKKNTPSTTKYVEFLDDPLNLIEFDQLGGASQILTNNDIDFDGIVIKQEVDSDVASTMDDDNAHTFEDSLMQNNTAVGNTAEEQNFECPACPYVHISSDGLEKHMIKNHMNENMCSICSKDISGNEKEHFARHIGPHLDYDEIIEGTTLIGGDYQCSLCPQHFKLRIDLENHREKAHTGQSKSKRYSSPTPDAAVENTSLAKTEDLFNAIIEETLDDYPMQTPTSVYTDVKDSNRPPLMSRLVRCDVCEKSFVNEEELNLHVNIIHATKNANGQSVFKCTQCTQSYTDKTTFIDHIKLHETGKPYRCETCQQTFRFKHNLDCHMRFKHCIECKGLKTANCSKCFIKVSDKNVKTFECDLCHKVLSNKSSLHRHKRMHLQEKPFKCDLCSQSFNYKQILNLHVKEKHGQDAAKCDPEYKCKSCSMVFSRRLELIMHMKTHDTNKLHTCQYCPKSFELYSMLVRHTEEHKINGFECGDCLEKFSTEDGIRAHISEKHNNAVSQEETLKCIECSLEFTDQNLLDEHVRSHVNDKPFECDICKQTFRYTQSLARHKKTYHTKQLQVYQCQLCPLSFHDRSDLVNHFRSHTVEKTFECEVCAEKFPDKLRLGAHMVLKHDAKSVQKQCFKCEHCSKTFWNKSLYESHVEIHSTENTYSCELCNQVFRSGQLFKQHFEKNHQGEIAELLPQITQPCELPNDTILLINNTNIVYENSTSDNNFVFGDAFLNSDQMIGMQAAESMMNELFDESSIEVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-