Ssin036481.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940881.1:80823161-80824621[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.9 9.7e+02 1.7 0.7 2 23 37 59 36 59 0.92 2 11 0.0002 0.033 15.8 0.2 1 20 131 150 131 152 0.94 3 11 0.00072 0.12 14.0 0.3 2 23 222 244 221 244 0.95 4 11 0.028 4.6 9.0 1.9 2 23 261 282 260 282 0.94 5 11 0.0001 0.017 16.7 2.1 1 23 289 311 289 311 0.96 6 11 2.3e-07 3.7e-05 25.1 1.6 1 23 317 339 317 339 0.98 7 11 0.00076 0.13 14.0 1.8 1 23 345 368 345 368 0.96 8 11 4.6e-06 0.00077 20.9 0.2 2 23 375 396 374 396 0.96 9 11 2.3e-06 0.00038 21.9 0.4 2 23 403 424 402 424 0.95 10 11 0.00022 0.037 15.6 0.4 3 23 432 452 430 452 0.97 11 11 5.9e-06 0.00098 20.6 0.1 1 23 458 480 458 480 0.99
Sequence Information
- Coding Sequence
- ATGGATATAAGTGTTAAAGAAGAACATGTCAAATACGAGACTGACGAATTCAGTTACGAGAACAAATGCGGCGAAATATTTGCTGTGTATAGTGGAAATTTCGTTTTGAGTTGTGGATTTTGTcatgataaatttgaaaatatgattgattttggtaCTCATATTGAGGTAAAACATGAGGAGAATATACGGTCGATAAATGATCTTGTGCGATCTAAGTTTGAAGCGGATATTAGTGAGAATTCGACAAAACCTGGAGTCGCTGGCAGTGTTCAAATGCAATCAACGCATTCTGTTGGAGATGAGGCCATATTTCATTCAGATGtagattcaattaaaaatgattttgcgTTTGAAACAGATCAGGAACCACTAAAAGAATCAGAACAGTACTCTTGCAATATATGTGGCAAAGATTTCGGAACGAAGCAACAATTAGATGACCATTACAGTGGGGGATTTTGCCAAGAGAGTTGTTTAAGCACTTCAAAAACTCAAGAAACGCCTCCCAGAAAAGTAAAACGAAGCAAAAAGCCAAGAAAACGAAAGGCGGAAAGTGACTTATCTGATGATGATCAAGATGATCTGCCACTCACTGAAATTCGTGAATCTCTTGTGGAGGCAAAAGTTGGAGCTAGCCCAACTGCTTGCATTCGAAGCATACCTTGTGATAAATGTGATCGactattcaaatcaaatcgGGCGCTTTCGTATCATATTGCCCGGCAACATAGCAAAGTAGAAGCTCCGAAACCCCATCCCGATGATCCACAGTATTTGCGTTGTAGATACTGCAACAAAGAATTTCCTACCAGACCAGAATGTCAAGAGCACGAAAAAGTACacaacgaagaagaaaaaccGTATTTGTGTTGGCACTGCAATCTCGGCTTTAAAACAAGTAGCGGGCGGAAACGACACATACGCATTCACACTGGCGAAAGACCGTTTCAATGCGAAGAATGCCCGAAAAGTTTCGACAACAAGGATCAACTCGAATCTCacatacataaacataaaaatcctCGCAAGTTTACTTGTCAAACATGCGGAGAATCATTCTTTCGAAGATTCCAATTGGGCTTGCATGAACAAAGGCGGCATACGGGCTTTCGTCCACTGGTTTGTGAGGATTGCGGAAAGAGATTTGTAACGATGGGAGAATTAACACAGCACCGGATACGACATTCTGATGTTAAAGATTGGAAATGTGAAGTATGTGGCAAATGTTTCTATTCCAAATGGGCATTAAATGATCATATGGCAGGCCACTCAGATGCTAAACCATATGGATGTGAGGTTTGTGGTAGATGGTTTTCCAGACCGAAAGCTCTGAAGAAACATAAGAAACTACATTCAGATGTGAAGGCGTATGTTTGTAATATTTGTGGAAAGGCATATGCCCAAGATTCGGGTCTATATGCACATAAAAAAACCCATGGTATTAGAAGTTCTCAATAA
- Protein Sequence
- MDISVKEEHVKYETDEFSYENKCGEIFAVYSGNFVLSCGFCHDKFENMIDFGTHIEVKHEENIRSINDLVRSKFEADISENSTKPGVAGSVQMQSTHSVGDEAIFHSDVDSIKNDFAFETDQEPLKESEQYSCNICGKDFGTKQQLDDHYSGGFCQESCLSTSKTQETPPRKVKRSKKPRKRKAESDLSDDDQDDLPLTEIRESLVEAKVGASPTACIRSIPCDKCDRLFKSNRALSYHIARQHSKVEAPKPHPDDPQYLRCRYCNKEFPTRPECQEHEKVHNEEEKPYLCWHCNLGFKTSSGRKRHIRIHTGERPFQCEECPKSFDNKDQLESHIHKHKNPRKFTCQTCGESFFRRFQLGLHEQRRHTGFRPLVCEDCGKRFVTMGELTQHRIRHSDVKDWKCEVCGKCFYSKWALNDHMAGHSDAKPYGCEVCGRWFSRPKALKKHKKLHSDVKAYVCNICGKAYAQDSGLYAHKKTHGIRSSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -