Ssin032473.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stratiomys singularior
Gene Symbol
-
Assembly
GCA_954870665.1
Location
OX940881.1:4535356-4541745[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00048 0.079 14.6 1.3 1 23 250 272 250 272 0.98
2 12 9.4e-05 0.016 16.8 1.0 1 23 278 301 278 301 0.96
3 12 8e-06 0.0013 20.2 1.7 1 23 308 332 308 332 0.98
4 12 0.0028 0.46 12.2 1.6 1 23 577 599 577 599 0.97
5 12 0.0048 0.8 11.4 3.2 1 23 605 628 605 628 0.94
6 12 6.7e-06 0.0011 20.4 0.5 1 23 635 659 635 659 0.96
7 12 0.00023 0.039 15.6 0.1 1 23 674 696 674 696 0.97
8 12 9.3e-05 0.015 16.8 1.0 1 23 702 724 702 724 0.98
9 12 0.0049 0.82 11.4 0.8 1 23 730 752 730 752 0.97
10 12 0.00042 0.07 14.8 0.4 1 23 758 781 758 781 0.97
11 12 6.5e-05 0.011 17.3 2.3 1 23 787 809 787 809 0.98
12 12 3e-06 0.00049 21.5 2.1 1 23 815 837 815 837 0.98

Sequence Information

Coding Sequence
ATGATGGCTGGAGAGGTGCTTGAAGCCGATTTACTTTGCCGAGCTTGTGCAGCACCTCACTATGGCGAAAAGGTTGACCTACAGGCGATACCTGCTTTAATGGAATTCTATATTTGGCTTTCCCACTCGATGATCGACAAAATGGACATACATATAGCACGCGTCTACTATCGTCAAATGGATTTATCTTACTTATCATTTTTTCTGTACTGTTTGCAGATCAACGAGTCCGACTTACTACCCAAGCAAATTTGTATGCCGTGCTACGATCGTTTGGATGAATTTCATCGATTTCAGTCGATGTGTGCTGAAtctcacaatttattgttggcaCGTTTTTCCAAGTGTATTATATCGAAAGGCGGCGAATGTTTTGAGATCTCGTTCAAAGATGAAACTTCGGACATACAACAACATGATTTCAGCTTCAGTTCGGTTCAGGAATccgaaaaaattgtgaatataATATctcaatacaacaaaaataCTGCCATCAATAATGGAAGCGGGGAATATTCGCATGCTAGCGATTATGATAGTCAGTTAGGAGGAAGTTATAAGTTGCTTCAGAGTGATGGCGATCAAACAAGTGAAATAGACATAAAACCCGACATTGATTGCTTCAATTATTCCGCATTGTTGGACAATGAAGAGAATGATGATAAGATGAATTCCAACGGATTAAAACAAAATAGCAGTGCTCTAAAGAATATCGGCTACTTACTTCAAGAAGGAAAAACATTCCTCTATAGATGCAATAAATGTCCTAAAAAGTTCAATGTAAAGGAACGTTACGAGGGGCATTTAAGGTGGCACCAAGGTCTGAAACCGTTCGCATGCAAGGAGtgccagaaaaaatattcaagactGGAGCGCCTGAGAAATCACATTTTAAGTGATCATTCGGATAGACCTAGACGATTCTATTGTACGGTTGCTGGTTGTaataaaaagtacaaaaatcgagaaactttgaaaaaacacATTAACACACATTCTCGCAGTCAGATATCAGACGATCAAGAGCTAACGGGAGCTGATGCAttgATTGATCCCAAGGACTGCCTACCAAAACAAATATGTGCACCGTGCTACAATCGTCTGGAcgatttcaatcaatttcaaattatgtgTGCCAACTCCCACAGTATCCTGCTAGCAAAGTATTCAAAATGCAAAGAACTTAAGGAAGAAACTATTGAGGGAACAGTGATCAAGGACGAAAAGCCTGAATTTTTGGTGAATGAACAATTGCTGGAGTTGCCTGTGGAGGAGATCGATTTCAATAGTGAACACGAAAATGACAATGAAATCACACTAGCTGCTGTTGACCACGATGACTATGTGGGAGATGATGGCGAAGATGATGTTGATGACGATAAAAAGGATTCGGACTATGATCCATTAAAAGACGATGGAGAATACAATGTGGATGGAATCGTGGAAAAGCCGGAACTGATTGAGCTAAAGCCTGACATGGATGATTCAGATGATGAAGTGCTGGCCGACAAAGTCAAACGATCGAGACGTGGAAGAAGACGAAAACGGAAGTCTGAGCACAGGgatgacgacgatgatgatgaagatgatgatgatgatgatggtgatggaGATGGAGACGAAGATGATAACTTGGAGGAAATAGAGAGTGGcgagaaaggtggaaaaagaAGGGGACGAAGACGCCGTGATGATATCGAGCGTGTAGAGAAAACTAAGTCTGAACCGTATGCATGTAGTAAATGTCCAAGGAAATTTTACAAGAAAGAACGCTACGAGGGACATATACGGCAGCACGAAGGGCTGAAGCCCTACGCATGTCCACATTGCCATAAGCAATATTCGAAAGCACTTAGATTAAAAAATCACATAACAAACGAACATTCAGAAAATCCAATGCGGTTTAATTGCACGTTTGAAGGATGTGATAAAGTTTATAGGAATAGAGAAAGTCTCAACTGGCACATCAATACGCATTTCAATCCTCCGAAGCCTGTGGACAAAGCTGACCGGCCTGTGTTCATTTGCGAATTGTGCGGGAAAGCGTTGTCATCGAGAGGAGTTCTAAGGAAACACACAATGATCCACACGAACGAATATCCATTTGTATGTGATATATGCCCACGAAAATACCGAACACAGGATAGATTGAATCTGCACAAGATGCGGCACAAAGGCATTAAAAATCATGAGTGTCCGATTTGCGGCTTAAAGAAAACAACCGGACATGAACTCAACGTACATATGAATGTTCATACCAGAGCGAAAAAATTCCCATGCAATTTATGCAATGCATGTTTCCTGAACAACGGTAATCTAGTTCGACACGTCCGGGTGGTGCATGAGGGTATTAAGACGTACAATTGCACATATTGTGATCAGAGTTTTGGTAAAGCTGAAACGCTAAAGCATCATGTGATGCGACATACTGGCGAAAAGCCGCACGAATGTCCCATATGTGGTAAACGATTTATTCAGAAAACATCATTTCAATTGCATGTTAAACGGCATGAAAAAGCGAAGAATGGGGAAAAAGTGAGAGCGCTACGACCGGTAACACCACAATCACATCAACCACCGATGCTTACGCAACCTCCTCTTGTACCGCCTTTGCCATCGTCACAACTGCCAGATCCAGCCCCAACATCAGTTCTTGCGCCTGAAAATCATGAGCATCAGGACAACTTTATAACATTGtaa
Protein Sequence
MMAGEVLEADLLCRACAAPHYGEKVDLQAIPALMEFYIWLSHSMIDKMDIHIARVYYRQMDLSYLSFFLYCLQINESDLLPKQICMPCYDRLDEFHRFQSMCAESHNLLLARFSKCIISKGGECFEISFKDETSDIQQHDFSFSSVQESEKIVNIISQYNKNTAINNGSGEYSHASDYDSQLGGSYKLLQSDGDQTSEIDIKPDIDCFNYSALLDNEENDDKMNSNGLKQNSSALKNIGYLLQEGKTFLYRCNKCPKKFNVKERYEGHLRWHQGLKPFACKECQKKYSRLERLRNHILSDHSDRPRRFYCTVAGCNKKYKNRETLKKHINTHSRSQISDDQELTGADALIDPKDCLPKQICAPCYNRLDDFNQFQIMCANSHSILLAKYSKCKELKEETIEGTVIKDEKPEFLVNEQLLELPVEEIDFNSEHENDNEITLAAVDHDDYVGDDGEDDVDDDKKDSDYDPLKDDGEYNVDGIVEKPELIELKPDMDDSDDEVLADKVKRSRRGRRRKRKSEHRDDDDDDEDDDDDDGDGDGDEDDNLEEIESGEKGGKRRGRRRRDDIERVEKTKSEPYACSKCPRKFYKKERYEGHIRQHEGLKPYACPHCHKQYSKALRLKNHITNEHSENPMRFNCTFEGCDKVYRNRESLNWHINTHFNPPKPVDKADRPVFICELCGKALSSRGVLRKHTMIHTNEYPFVCDICPRKYRTQDRLNLHKMRHKGIKNHECPICGLKKTTGHELNVHMNVHTRAKKFPCNLCNACFLNNGNLVRHVRVVHEGIKTYNCTYCDQSFGKAETLKHHVMRHTGEKPHECPICGKRFIQKTSFQLHVKRHEKAKNGEKVRALRPVTPQSHQPPMLTQPPLVPPLPSSQLPDPAPTSVLAPENHEHQDNFITL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-