Basic Information

Insect: Stratiomys singularior
Gene Symbol: -
Assembly: GCA_954870665.1
Location: OX940881.1:2564006-2570404[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.056 9.2 8.1 0.6 1 23 315 337 315 337 0.93

2 18 0.018 3 9.6 4.3 1 23 343 366 343 366 0.94

3 18 6.3e-06 0.0011 20.5 1.8 1 23 374 398 374 398 0.95

4 18 0.0012 0.2 13.4 1.1 1 23 414 436 414 436 0.97

5 18 0.00019 0.031 15.9 1.7 1 23 442 464 442 464 0.98

6 18 0.00081 0.13 13.9 0.6 1 23 470 492 470 492 0.98

7 18 0.6 99 4.8 0.0 1 23 498 521 498 521 0.95

8 18 2.4e-05 0.0039 18.7 2.2 1 23 527 549 527 549 0.97

9 18 5.6e-05 0.0092 17.5 2.2 2 23 556 577 555 577 0.97

10 18 0.23 37 6.2 0.7 1 23 772 794 772 794 0.76

11 18 0.004 0.66 11.7 4.6 1 23 800 823 800 823 0.96

12 18 0.00011 0.019 16.6 1.3 1 23 830 854 830 854 0.96

13 18 0.00017 0.029 16.0 0.2 1 23 870 892 870 892 0.97

14 18 0.00094 0.16 13.7 2.3 1 23 898 920 898 920 0.97

15 18 0.00048 0.08 14.6 1.0 1 23 926 948 926 948 0.98

16 18 0.24 39 6.1 0.0 1 23 954 977 954 977 0.96

17 18 1.9e-05 0.0032 19.0 0.5 1 23 983 1005 983 1005 0.98

18 18 5.6e-06 0.00093 20.7 2.4 2 23 1012 1033 1011 1033 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.056	9.2	8.1	0.6	1	23	315	337	315	337	0.93
2	18	0.018	3	9.6	4.3	1	23	343	366	343	366	0.94
3	18	6.3e-06	0.0011	20.5	1.8	1	23	374	398	374	398	0.95
4	18	0.0012	0.2	13.4	1.1	1	23	414	436	414	436	0.97
5	18	0.00019	0.031	15.9	1.7	1	23	442	464	442	464	0.98
6	18	0.00081	0.13	13.9	0.6	1	23	470	492	470	492	0.98
7	18	0.6	99	4.8	0.0	1	23	498	521	498	521	0.95
8	18	2.4e-05	0.0039	18.7	2.2	1	23	527	549	527	549	0.97
9	18	5.6e-05	0.0092	17.5	2.2	2	23	556	577	555	577	0.97
10	18	0.23	37	6.2	0.7	1	23	772	794	772	794	0.76
11	18	0.004	0.66	11.7	4.6	1	23	800	823	800	823	0.96
12	18	0.00011	0.019	16.6	1.3	1	23	830	854	830	854	0.96
13	18	0.00017	0.029	16.0	0.2	1	23	870	892	870	892	0.97
14	18	0.00094	0.16	13.7	2.3	1	23	898	920	898	920	0.97
15	18	0.00048	0.08	14.6	1.0	1	23	926	948	926	948	0.98
16	18	0.24	39	6.1	0.0	1	23	954	977	954	977	0.96
17	18	1.9e-05	0.0032	19.0	0.5	1	23	983	1005	983	1005	0.98
18	18	5.6e-06	0.00093	20.7	2.4	2	23	1012	1033	1011	1033	0.97

Sequence Information

Coding Sequence: ATGCCCGACAACGAACTAGATGCAAGATTAATATGTAGGGCTTGTGCTTGTTCTTTAAAAGGAAGAGAAATGAATTCGTTGAATGTTCCTGAAATTCTCGCGATGTTTCAGACATTTTCGGGAACGCAGgttGGACCAGAAGATAGCTTACCAAAATCAATATGTTTGAAATGTAATGTACGTTTACAAGATTGCAAAAGATTCCAAAATGTGTGTATTGCATCCTATAAATTTTTACTCGATTGTTTTCCACCAAAACTaaacgataaatttaacagtAAAGAAGTTGCCAAAAAAAACGTACCTGATGAGGAAAACAGTCAAGAAAACTATTCAAGCGATACGTTCCATGGTGAAAGTGAAGACTCAGAATACTATCCATGTAAAATTATAAATGTAAAGGCTAAAAGAAAAGTTGAATGTAAGAAATTGAATCCTTCGaatgaagaatattttaaagaaatgttaGATTCAGACGACGATAATATTCTTGCTGAAATAGTACGTAAATGCAAGGAAGAAATGGAGGAAGAGAGGAGAGAAGACAAGGAAAGAACAAGACGTCGGAGAAAATGGATGCAAGGTAAATTGGCAAATATTAAAGATGCAGTGGAAAAtggtaaacaaaatattaataaaaatgacaCAACTGAGAGTTTAGAAATGTCGAaagaaaatactcaaaattataaagaaactAAACAAAATTGCAGCGGGAATGAGCAAAGTGAAAGAAGTGAAAGTAGTGAGGAAGAACCAGATATAGTTGAGATTAAGAAAGAAGATGTCATTAAATACCATTTCGGCGATAGTGGAAGTgaagtcaaaaataaagaatgttGGTATCAGGCTGAAGgtatcaatctaaataaaaaagttaacatAATGGTAGAACCTAGAGAAGATGATGATCCAATGTTGAAACTGATGAGAATCGAAACGTATGTATGCGATCAATGTCCGAAAACTTTTTTGATGAAAGAGCGTTACGAAGGCCATTTACGACAGCATGCAGGATTGAAGCCTTTCGAGTGTGACAAATGTCATAAGAAATATGCAAGATTCGAACGTCTGAAAAGCCACAAACTATATGAACATTCAGGAGAGCAACAGAAGCGTTATTGTTGCGAAATCGATGGATGcgacaaaacatttaaaaatcgcGAAACGTTACAAAAACATATCAAAGGCCACTCTAATCCGccaaaacaaacttttcaaaaaagtggACGTCGGGTGTTTATTTGCGAGCTATGCGGCAAGCAATTGCATTCAAAAAGCACTCTGACGGAGCACGAGATGATGCACAAAGGCGAATCCCCTTACACATGCAATCTTTGCCCTAAAAGTTTTCGGGCTGAACgtaaattacaacaacataaaCTGCGTCATGCAGGTGTGAAAAAATTTACGTGTGAAATATGTGGCTTGAAAAAGATTACTAAGAAAGAGCTTAAAAGCCATATGAATATCCACACAAGAGAAAAGCAATTTCCATGCAAAGCATGTGGTGCAATTTTTTTAGCACATGGCAATTTAGTGCGACATGTACAAGTCGTGCATAGTGGACTTAAATTACATCCGTGCACATACTGTGATAAAGTCTTCGCTAAAGCACAAACGTTACGAACCCATACAATGAAGCACACTGGCGAGAGACCTTTGGTGTGTCCCCATTGTGATAAAAGGTGTATATCGCGGCCAGCGTTACAGTACCATATACGTCGGCATGAGAAAGATTATACGCAAACCGCACCGATGCTAAATCAACacgaagaaaaaatcgaGCCAAATGTAGAAGAAATTTATGAAGATGAAATTGCGTGCGATATAATTGATGGAGAGAGTTGTGAAAgcgattcaaaacaaaaaagtgttGAATTTGATCCATTAAATGATAGTGAAGTATTTGTAAACAGTGGCCCGACGCCTGTAAACTTAGAAAATAAATACGTGGTAAAGAATCAAAAAGCAGTGGACTCAGACGATGATGAAATTCTTGCTGATTTGGTTCgtaaatccaaacaaaaaagagaagaagaacGGACTAAAGAAGGAAATCGAAGGCTTCGAAGAAAATGGATCGGAAAGAAGATGGATACTGTTGCACAAACACATGAAGTCGATATAAAAAAGGTAAAAAGTGTTTCTATTGAAAGGCAGGATAGTTATAAGGATGATTGCGATGAGCATGGGGACAAGGATGAACTAATGGAGGATGGAGAAAACAATGAAGGAGATGGAGATGAGGAGTTTGAAGagcacaaacaacaaacaggaaaagatagaaaaaaatctaaaaaaccaAGATCATATGCATGCAATAAATGTCCCAAAAcgtttttaaagaaagaaatttacGAAGGCCACCTGCGACAACACGAGGGATTGAAGCCTTTCGAGTGTGACAAATGTCATAAAAAGTATTCAAGATTTGAACGCCTTACAAATCACAAACTGAGCGACCATTCGGACGAGCCGAAGCGATATTGTTGCGAAATTGCTGGATGTGACAGAAAATATAGAAACCGGGAAACATTGCAAAGGCATGTCAGAGCCCATTTCACGCCTCCTATGCCGCGTCCAGACAAAAGCGAGCGACAAGTTTTTATTTGCGAGCTATGTGGTAAACAACTATCTACAAAGGGAACACTAAGGGAACACGAAATGATGCACAAGGGTGAATACCCATATGCTTGTGATGTATGCCCAAAACGTTTTCGAGTTCAGCATAAATTATACTTACACAAACTACGACACCAGGgcgtgaaaaatttcaaatgtgagGTTTGTGGTTTAAAGAAAACTACTAACAAAGAACTGAAAAGTCATATGAATATTCATACACGAGAAAAACAGTATCCATGCCGACTTTGCGACGCAATATTTTTGGCTAATGGCAATTTAGTTCGACATGTTCAAGTAGTTCATGATGGCATAAAGTTGTATGCTTGTTCATATTGCGATAAAGCTTTCGGGAAAGCGGAAACGTTGCGAAATCATACAATGAAACATACCGGCGAAAGGCCGTTGATGTGCCCCCATTGCGACAGAAGATTCATTTCGCGAACATCGTTACAGTATCATATACGGCGTCACGAAAAAGATGTCACAGAAAGTACAAGTGTAGCTGatattgtgaaagaaaaagaTGTGAAACCTAACGTAGCTATTGTTACTAGTAGCTGA
Protein Sequence: MPDNELDARLICRACACSLKGREMNSLNVPEILAMFQTFSGTQVGPEDSLPKSICLKCNVRLQDCKRFQNVCIASYKFLLDCFPPKLNDKFNSKEVAKKNVPDEENSQENYSSDTFHGESEDSEYYPCKIINVKAKRKVECKKLNPSNEEYFKEMLDSDDDNILAEIVRKCKEEMEEERREDKERTRRRRKWMQGKLANIKDAVENGKQNINKNDTTESLEMSKENTQNYKETKQNCSGNEQSERSESSEEEPDIVEIKKEDVIKYHFGDSGSEVKNKECWYQAEGINLNKKVNIMVEPREDDDPMLKLMRIETYVCDQCPKTFLMKERYEGHLRQHAGLKPFECDKCHKKYARFERLKSHKLYEHSGEQQKRYCCEIDGCDKTFKNRETLQKHIKGHSNPPKQTFQKSGRRVFICELCGKQLHSKSTLTEHEMMHKGESPYTCNLCPKSFRAERKLQQHKLRHAGVKKFTCEICGLKKITKKELKSHMNIHTREKQFPCKACGAIFLAHGNLVRHVQVVHSGLKLHPCTYCDKVFAKAQTLRTHTMKHTGERPLVCPHCDKRCISRPALQYHIRRHEKDYTQTAPMLNQHEEKIEPNVEEIYEDEIACDIIDGESCESDSKQKSVEFDPLNDSEVFVNSGPTPVNLENKYVVKNQKAVDSDDDEILADLVRKSKQKREEERTKEGNRRLRRKWIGKKMDTVAQTHEVDIKKVKSVSIERQDSYKDDCDEHGDKDELMEDGENNEGDGDEEFEEHKQQTGKDRKKSKKPRSYACNKCPKTFLKKEIYEGHLRQHEGLKPFECDKCHKKYSRFERLTNHKLSDHSDEPKRYCCEIAGCDRKYRNRETLQRHVRAHFTPPMPRPDKSERQVFICELCGKQLSTKGTLREHEMMHKGEYPYACDVCPKRFRVQHKLYLHKLRHQGVKNFKCEVCGLKKTTNKELKSHMNIHTREKQYPCRLCDAIFLANGNLVRHVQVVHDGIKLYACSYCDKAFGKAETLRNHTMKHTGERPLMCPHCDRRFISRTSLQYHIRRHEKDVTESTSVADIVKEKDVKPNVAIVTSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -