Basic Information

Insect: Stratiomys singularior
Gene Symbol: Usp39
Assembly: GCA_954870665.1
Location: OX940881.1:92519083-92524795[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.1e-05 0.0018 19.8 2.7 1 23 280 302 280 302 0.98

2 14 9.1e-06 0.0015 20.0 0.7 2 23 315 336 314 336 0.97

3 14 0.00021 0.034 15.7 0.6 1 23 343 365 343 365 0.97

4 14 2.2e-05 0.0037 18.8 0.3 1 23 382 404 382 404 0.97

5 14 1.1e-05 0.0017 19.8 0.4 1 23 413 435 413 435 0.99

6 14 1.3e-05 0.0022 19.5 0.4 1 23 441 463 441 463 0.99

7 14 0.021 3.5 9.4 7.8 1 23 469 491 469 491 0.98

8 14 1.3e-05 0.0022 19.5 0.4 1 23 497 519 497 519 0.95

9 14 0.011 1.8 10.3 0.5 1 23 525 547 525 547 0.97

10 14 5.5e-06 0.00091 20.7 1.7 1 23 553 575 553 575 0.98

11 14 1.2e-06 0.0002 22.7 0.5 1 23 581 603 581 603 0.98

12 14 3.7e-07 6.1e-05 24.4 2.1 1 23 609 631 609 631 0.99

13 14 0.00024 0.039 15.6 0.2 1 23 637 659 637 659 0.98

14 14 2.9 4.8e+02 2.7 0.5 1 12 745 755 745 766 0.72

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.1e-05	0.0018	19.8	2.7	1	23	280	302	280	302	0.98
2	14	9.1e-06	0.0015	20.0	0.7	2	23	315	336	314	336	0.97
3	14	0.00021	0.034	15.7	0.6	1	23	343	365	343	365	0.97
4	14	2.2e-05	0.0037	18.8	0.3	1	23	382	404	382	404	0.97
5	14	1.1e-05	0.0017	19.8	0.4	1	23	413	435	413	435	0.99
6	14	1.3e-05	0.0022	19.5	0.4	1	23	441	463	441	463	0.99
7	14	0.021	3.5	9.4	7.8	1	23	469	491	469	491	0.98
8	14	1.3e-05	0.0022	19.5	0.4	1	23	497	519	497	519	0.95
9	14	0.011	1.8	10.3	0.5	1	23	525	547	525	547	0.97
10	14	5.5e-06	0.00091	20.7	1.7	1	23	553	575	553	575	0.98
11	14	1.2e-06	0.0002	22.7	0.5	1	23	581	603	581	603	0.98
12	14	3.7e-07	6.1e-05	24.4	2.1	1	23	609	631	609	631	0.99
13	14	0.00024	0.039	15.6	0.2	1	23	637	659	637	659	0.98
14	14	2.9	4.8e+02	2.7	0.5	1	12	745	755	745	766	0.72

Sequence Information

Coding Sequence: ATGAATTTCCATGAATTGTGTCGTGTTTGTGCCGAAAGTAATAAGGAAATGCATCATATTGCTAAATCTATAGCACCACAAATAAATGTTACTTGCAGTAGTGTTGTTGAATTATGGAATATATTTTCCAAGCTGTTGGTTAGCGAAAACAACGATCTACCCGACCAAATTTGCATTGATTGCCTTAACGATATTCACCAATCGTATAGTATTCTCGAAAAATGTGAAACTTCTCGAAATAATCTAATACAAATTCGAAATCTGCAATATATATCAGCGTCCGAACAGGAAATCAACTCAgatcaaaatcaatcaattgaatTGCATGCTTCAGCTGGCATCAAAGAAGAAATTCTTGAGGATGAATTGTTGGCAGATGTTAAAAGTTTCATGCAACCTGCTGaaagtaaaattattgaaatcataGCCAATGACGTGGATCAATTTACAATTGTGGATGCTGGTCGGTTTTCGATTGAAGCTACACCGCCGTCgaacaaagaaaatgaaaatgaaattgatatattcgaagaaaaaggaaattatcaTCACATAGATGATGATGCAGTTggtgaaaatgttgttgatgaCAATGTGGCTGATGATGACGCTGATGCGGATGGAGAAGCAGATGTTGATGCAGATGCTGATCTTGATGCTGAAGCAGATGCGGATGAGGACGATGAGGATGATTTTGATGACGAAGACTGGCAGCCCCTTTCGAAACTGCTTGTTCGAAGTcaggaaaacaaatcaacaataaaaagcgaagaaaacgaagaagaaCTACTAGGGAAAagaaaacgaaaatctaAGCTTGATGATAGCCTTGAGAACTACTGCTGCGGTGTATGCGACAAGGTATTTGATAAAAAGTCCCGATTGGTTCGTCATATGAAATCTCATACGAGTGGACGAAGCAGACGTAAAAAAGAGCCTTTAGAATGTGGTGTGTGCAAGAAAACGTTTGAGAAAAAATCACGCCTTATACGTCATATGAATGTTCATGATCCTGACGGCCGACCATTCGAATGCGAAGTTTGCAAAGTAAGATTTGTACATGAAAGCAACATGCGACGGCATGCCATTGTTCATACAGAAGTTATCAATGAGTCATCAACGATATTGAAGCAGCAAACGGTTTTTAAATGCATTGAATGTCCAAAAGAGTTTGCAAAACAAGAATCATTAGCATCACATATGAGAACGCATCGAACAAAAGGTGAAAAGAAATCATACACATGCGAGATATGCTCTCAAGTGTATCCTCAACTTAATTTGTTGACACGACACATGAAAAGTCACGAGGAATACCGAAATTATCAGTGTAACATTTGTGGAAAACGATTCGCATTGACTTCACGTTTAATCGATCATATTAATCGTCACAATGGTGTGAAGCCACACGTTTGTCATTTTTGTAATAAAGCATTTTTGCAAAGTTGCACGCTTAAGGATCATTTACGCACCCATACCGGCGAACAACCATACCTCTGTGCACAATGTGGAAAGGCCTTCAATAATGGTAGTAATTTACGGCAGCATTTGTTACGACATACTGGGATTAAACCTTTCGCGTGTCCTGAGTGTCCCAGTCGATTTGCTTGCAAAGGTGAGCTGAAAGGACATATGACAACACATCAGAATATCAAACCATATAGTTGCGAGCAATGTGACTCGAAATTTACGAAGccacaatcgctcaaaaaacaTATGAGAATCCACACAGGAGAACGTCCCTATGCATGCGATGCTTGTGGAATGACATTTACTTCATCATATCCCTTAAAACGCCATATGCGAACGCACACAGGCGAGAAGCcttataaatgtaaatattgtgatAGATCATTTGCACAAAGCAATGATTTGGTGAAACACACAAGAAGTCATGTGGGTGAGAATACTTATCGGTGTGAAGAATGTCCAGCAGCGTTTCGTCTACACAATGAATTGCGTGCGCACATACAAGAGCATTTTCGCGAGAAGAACGATCAGAAAGATTTAATGGATGATTTGAAAGTTGCACTAATGAAACAAAAGGCTGCTGCGGAACAAGaaCCAGTGAAAAAGAAGCCTAAACTATTTGATGCCGATGATGATGataCGTATACACCATCGGCATTCAATCCAAAATATCGAGTATGCCCGTATCTGGATACAATCAACCGGCAGATATTAGACTTTGACTTCGAGAAACTCTGCTCGATATCGTTGACCCGAATCAATGTGTACGCTTGTCTAGTTTGTGGGAAATATTTCCAAGGCAGGGGTACGAATACACACGCCTATACGCATTCCGTTTCAGAATCGCATCATGTGTTCTTAAATCTCCAAACGCTGAGGTGTTATTGTCTTCCCGACAATTACGAAATTATAGATTCATCGCTAGACGACATTAAATATGTGCTAAATCCAACCTTCACCACTGCGGATATTAAAAATGTGGATAGTCCTTTGGTAAAGTATTCCCGAACAGTCGATGGTACTTTATATCTTCCCGGAGTAGTTGGTCTAAATAATATCAAGGCAAATGATTATTGCAACGTTGTGCTACATGCACTCTCGCATGTGGCTCCACTTCGTGACTACTTTTTGCGAGAAGAAAATTACGCAAAAATTCGACGGCCGCCAGGCGATTCTATATTCACTTTAGTACAACGCTTCGGAGAGCTTATGCGTAAAATGTGGAATCCCAGGAACTTCAAAGCCCATGTGTCGCCTCATGAAATGCTGCAGGCCGTTGTGCTATGGAGCAACAAACGTTTCCAGATCACAGAACAGGGTGATCCAATTGATTTCCTTTCATGGTTCCTTCACACTTTGCATCGGGCGTTGAAAGGGACGAAAAAGCCTGATTCATCGATTATTAATAAATCGTTCCTGGGGCAAATGACAATATACACGAGGAAGATTCCCTCGACAGATTTGGACGATACTCAGAAAGCCTTATTGCTTGCGACTGAAGAGTATCAGGAAAAGTCGGAATCATCAAGCTTTTTGTACCTCACTTGCGACCTACCTCCGCCGCCACTTTTCACTGATGAGTTCCGAGAGAATATCATTCCGCAGGTGAATTTGTATCAACTTCTAGCGAAATTCAATAGTGTAACGGAGAAGGAATACAAAACTTACAAGGATAACTATATGAAACGGTTCGAAATCAATCGATTGCCATATTTCATAATACTTTACATCAAACGTTTTACCAAGAACACTTTCTTCTTGGAGAAGAATCCGACAATTGTGAATTTCCCAATTAAGAACGTTGATTTCGGTGACATTCTTACTGCAGAGAATCGAAAGCAGCATCCATGCACAAAGTACAATTTAGTGGCAAACATTGTTCATGATGGCGAACCGAGCAAGGGAACCTATCGCGTGCATATATTGCACAAGTCAAACGGTCAATGGTATGAAATGCAAGACTTGCATGTTACAAACATCTTACCACAAATGATAACATTAACGGAAGCGtatattcaaatttatgaaaGGAGTACGGAATAG
Protein Sequence: MNFHELCRVCAESNKEMHHIAKSIAPQINVTCSSVVELWNIFSKLLVSENNDLPDQICIDCLNDIHQSYSILEKCETSRNNLIQIRNLQYISASEQEINSDQNQSIELHASAGIKEEILEDELLADVKSFMQPAESKIIEIIANDVDQFTIVDAGRFSIEATPPSNKENENEIDIFEEKGNYHHIDDDAVGENVVDDNVADDDADADGEADVDADADLDAEADADEDDEDDFDDEDWQPLSKLLVRSQENKSTIKSEENEEELLGKRKRKSKLDDSLENYCCGVCDKVFDKKSRLVRHMKSHTSGRSRRKKEPLECGVCKKTFEKKSRLIRHMNVHDPDGRPFECEVCKVRFVHESNMRRHAIVHTEVINESSTILKQQTVFKCIECPKEFAKQESLASHMRTHRTKGEKKSYTCEICSQVYPQLNLLTRHMKSHEEYRNYQCNICGKRFALTSRLIDHINRHNGVKPHVCHFCNKAFLQSCTLKDHLRTHTGEQPYLCAQCGKAFNNGSNLRQHLLRHTGIKPFACPECPSRFACKGELKGHMTTHQNIKPYSCEQCDSKFTKPQSLKKHMRIHTGERPYACDACGMTFTSSYPLKRHMRTHTGEKPYKCKYCDRSFAQSNDLVKHTRSHVGENTYRCEECPAAFRLHNELRAHIQEHFREKNDQKDLMDDLKVALMKQKAAAEQEPVKKKPKLFDADDDDTYTPSAFNPKYRVCPYLDTINRQILDFDFEKLCSISLTRINVYACLVCGKYFQGRGTNTHAYTHSVSESHHVFLNLQTLRCYCLPDNYEIIDSSLDDIKYVLNPTFTTADIKNVDSPLVKYSRTVDGTLYLPGVVGLNNIKANDYCNVVLHALSHVAPLRDYFLREENYAKIRRPPGDSIFTLVQRFGELMRKMWNPRNFKAHVSPHEMLQAVVLWSNKRFQITEQGDPIDFLSWFLHTLHRALKGTKKPDSSIINKSFLGQMTIYTRKIPSTDLDDTQKALLLATEEYQEKSESSSFLYLTCDLPPPPLFTDEFRENIIPQVNLYQLLAKFNSVTEKEYKTYKDNYMKRFEINRLPYFIILYIKRFTKNTFFLEKNPTIVNFPIKNVDFGDILTAENRKQHPCTKYNLVANIVHDGEPSKGTYRVHILHKSNGQWYEMQDLHVTNILPQMITLTEAYIQIYERSTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -