Basic Information

Insect: Stratiomys singularior
Gene Symbol: -
Assembly: GCA_954870665.1
Location: OX940881.1:45990122-46003836[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0022 0.36 12.5 1.1 1 23 292 315 292 315 0.94

2 13 0.00014 0.022 16.3 0.1 1 23 376 399 376 399 0.91

3 13 1.7e-05 0.0028 19.2 2.6 1 23 407 429 407 429 0.98

4 13 2e-06 0.00032 22.1 2.3 1 23 436 458 436 458 0.99

5 13 5.6e-07 9.3e-05 23.8 1.5 1 23 464 486 464 486 0.99

6 13 6.5e-05 0.011 17.3 1.7 1 23 493 515 493 515 0.98

7 13 2.8e-05 0.0046 18.5 0.4 1 23 521 543 521 543 0.95

8 13 3.7e-05 0.0061 18.1 0.3 1 23 549 571 549 571 0.98

9 13 1.5e-06 0.00024 22.5 0.6 1 23 577 600 577 600 0.96

10 13 1.8e-06 0.0003 22.2 2.0 1 23 606 629 606 629 0.97

11 13 8.1e-05 0.013 17.0 1.5 1 23 635 657 635 657 0.96

12 13 1.1e-05 0.0018 19.8 0.8 1 23 663 685 663 685 0.97

13 13 0.00085 0.14 13.8 0.2 1 22 691 712 691 715 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0022	0.36	12.5	1.1	1	23	292	315	292	315	0.94
2	13	0.00014	0.022	16.3	0.1	1	23	376	399	376	399	0.91
3	13	1.7e-05	0.0028	19.2	2.6	1	23	407	429	407	429	0.98
4	13	2e-06	0.00032	22.1	2.3	1	23	436	458	436	458	0.99
5	13	5.6e-07	9.3e-05	23.8	1.5	1	23	464	486	464	486	0.99
6	13	6.5e-05	0.011	17.3	1.7	1	23	493	515	493	515	0.98
7	13	2.8e-05	0.0046	18.5	0.4	1	23	521	543	521	543	0.95
8	13	3.7e-05	0.0061	18.1	0.3	1	23	549	571	549	571	0.98
9	13	1.5e-06	0.00024	22.5	0.6	1	23	577	600	577	600	0.96
10	13	1.8e-06	0.0003	22.2	2.0	1	23	606	629	606	629	0.97
11	13	8.1e-05	0.013	17.0	1.5	1	23	635	657	635	657	0.96
12	13	1.1e-05	0.0018	19.8	0.8	1	23	663	685	663	685	0.97
13	13	0.00085	0.14	13.8	0.2	1	22	691	712	691	715	0.92

Sequence Information

Coding Sequence: ATGACTGAATCGCTCGGAGCCCATGAAATTATGCCAATGGCATGTTTGATATGCAACCGCGAAAATACGCAAGATGTTGCATTTTTCTTGATCGGAGAAAGTGTAAGGGAAGGCGACCAGCATCCTACTTTATCAGAAGTGTTAtcttcaattttatcatttgaaattgTGGACGAAAATGCTCATTCAAAGGTTATTTGTGAAGAATGCAGCAATCGCTTGAATAAATATGATGAGCTTGAACAACAAATGCtcgaattgaaatataaaataattcagGATTTCAGTGAAACCTCGCGTCTGAACGATGGCGCGGtacaatttgaaattgaagaggCCTTTGATGTAGGAATTGAAGAGCCTCTAGTTGCCAACATCAAAAATGAGCCAGAAACACTATGCgtagaagaagaaacaaaaagaaatataaaacaagCTTCCAACGCAGGTTTTATATCCTTACTATCGACTCATGAATGTGTAACCGAGGATGTGGAAAACAGCACAACAGATAACACGACAATAATTGTAAAAGAGGAAAATGCTGAATCAGATATAGATGAGGAGCAATATTTTGACCAAACTACTGGAAATATGGTTGAAATAATAACAGAAAATGatgaGTATAATCAAATTGAGACGAAACCTGCAGCTTCAGTTGACAGTCCGACCATGGACCACCATGACATCGATAACGAAAATAACGATAGCCAAGATGAGGTGTTAGATGAgcaaacttatatttttttcaacggGCTTAAATACACTTGTCTAATTTGTTCCTCAAATTCCACTAGCGATGACCAAACGAATCAATATGATGATGTAGACTCAATTTATAATCACCTGAAAATTATACATGACATAACAGCATATATATGTTATGTTTGCGGCCAGGACTTCCAGAAACAAGAGCATTTAGCCCAGCATCGTCTTGAAAAGCACGAAAGCGAGAGTGGAATAAAAGGAGGTTCGGAAGTCAATGATATTCGCAAGCCTTATTTCACTTTCAATGGCGAGAACTTTTCATGCCTCATGTGTCCTGCAGGTTCTGAAGCTGCCAAAGCGAAATGTGCAGCACGTACAATATCCGCTCACTTTAAGACTGTCCATAATTTGCGACTGTACATCTGTGACATATGCGGAACAGATTTCAAGAGGCGAATGGAATTGACTGAGCATGTTGACGAGGCACATGGGGGTACCGAAGATGGAGAGTTCCAATGCGATACATGCAATCGTGTATTCACCAATCTGCGCCAATTCCGCATACACAGAAGATTGCACTACACGTCAACGAAATCTTACCAATGCACTCAGTGTAATAAGAAGTATAGCTCCAAAAATCTGCTAAATGAACATATGAATATGCACACAGGATTACGGCCGTACAAGTGTCCCAATTGCACCAAAGATTTCGCTTCGAAATACACGCTGACCTCACACATGAAAATACATTCTGATCGACCAAGACCTTTTACTTGTAAACTCTGCACCAAATCATTTTTCAGTGCGCAAAACCTTTTGCAGcatgaaaaaattcatacagGCTTAAAGGAATTTATATGTGATGTGTGTAATAAAGCGTTCGGCACACAGCACAACTTAGAAGTTCATAAAGTGGTACATACTGGCTACAAACCATTTATATGTAGAACATGTGGTAAAGCATTCGCTAGACGAGGTGAAATCAAAGATCACGAGCGGACACACACAGGCGAGAGACCATTTGTTTGTGATATTTGCAATATGTCGTTCGCACAACGTTCCAACCTTACAACACACAAGCGAGCTACACATTTGAATGATAAGCGGTATAAATGCGAACAATGTGATCGATCATTCAAGCGCCGGCGTTTGTTGAATTATCATATACGAGCATCACATACAGGCGAACGACCTTACCTATGTTCTCTATGTAATGCAACTTTTGTTTACCCGGAACACTATAAGAAGCACTTAAGGATACACAGTGGAGTAAAGCCGTATTCATGTGAGGTGTGCGGCAAATCGTTCAATAGTCGGGACAATAGGAATGCTCATCGCTTTATACATAGTGATAAGAAGCCGTACGAGTGCCTTGTATGCGGTCAGGGTTTTATGAGGAAACCGTTGCTCTATACTCATATGCAGCAGTCAGGACATGTGAATGACACCATTATCATTAATCAGCCTAGGATTACGACAGAATTTGATGATAAGAaattaaatgatgaaaatgttctCATTGAAATGGTGCATGAAGATGAATTGGTCGAAGGACAATTGATCGATGGTCCAAGTCAATATGGTACAAGTGCTGACGAGGAGATGGATGATGTTATTGACCACGGCGATGATAATTCTATTTCAAATGATATTCTCGATGGTGATCTCACGGAAGTCATGAACTCCGATCAGTTTGTTGTTCGTTACGAAGGCGAAGCAGAACAAATGCAACTAGTACAAATACGTACAAAAGATGAGTCCGGTAAAGATGCATTTACGTGGGTTAATCTGGTTTCCGACAAAGATAGCTAA
Protein Sequence: MTESLGAHEIMPMACLICNRENTQDVAFFLIGESVREGDQHPTLSEVLSSILSFEIVDENAHSKVICEECSNRLNKYDELEQQMLELKYKIIQDFSETSRLNDGAVQFEIEEAFDVGIEEPLVANIKNEPETLCVEEETKRNIKQASNAGFISLLSTHECVTEDVENSTTDNTTIIVKEENAESDIDEEQYFDQTTGNMVEIITENDEYNQIETKPAASVDSPTMDHHDIDNENNDSQDEVLDEQTYIFFNGLKYTCLICSSNSTSDDQTNQYDDVDSIYNHLKIIHDITAYICYVCGQDFQKQEHLAQHRLEKHESESGIKGGSEVNDIRKPYFTFNGENFSCLMCPAGSEAAKAKCAARTISAHFKTVHNLRLYICDICGTDFKRRMELTEHVDEAHGGTEDGEFQCDTCNRVFTNLRQFRIHRRLHYTSTKSYQCTQCNKKYSSKNLLNEHMNMHTGLRPYKCPNCTKDFASKYTLTSHMKIHSDRPRPFTCKLCTKSFFSAQNLLQHEKIHTGLKEFICDVCNKAFGTQHNLEVHKVVHTGYKPFICRTCGKAFARRGEIKDHERTHTGERPFVCDICNMSFAQRSNLTTHKRATHLNDKRYKCEQCDRSFKRRRLLNYHIRASHTGERPYLCSLCNATFVYPEHYKKHLRIHSGVKPYSCEVCGKSFNSRDNRNAHRFIHSDKKPYECLVCGQGFMRKPLLYTHMQQSGHVNDTIIINQPRITTEFDDKKLNDENVLIEMVHEDELVEGQLIDGPSQYGTSADEEMDDVIDHGDDNSISNDILDGDLTEVMNSDQFVVRYEGEAEQMQLVQIRTKDESGKDAFTWVNLVSDKDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01089299;
90% Identity: -
80% Identity: -