Ssin009514.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940877.1:169717746-169740982[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0009 0.15 13.7 0.1 3 20 207 224 206 225 0.95 2 21 0.28 47 5.9 1.4 2 21 229 248 228 249 0.88 3 21 0.00062 0.1 14.2 1.4 1 23 351 373 351 373 0.98 4 21 4e-05 0.0066 18.0 0.7 1 23 379 401 379 401 0.98 5 21 0.3 50 5.8 2.2 2 23 408 429 407 429 0.96 6 21 2.8e-07 4.6e-05 24.8 0.4 1 23 435 457 435 457 0.98 7 21 0.0072 1.2 10.9 3.1 1 23 463 485 463 485 0.98 8 21 1.1e-05 0.0018 19.7 2.3 2 23 491 512 490 512 0.96 9 21 7.6e-05 0.013 17.1 4.4 1 23 518 540 518 540 0.98 10 21 0.0068 1.1 11.0 3.0 2 23 546 567 546 568 0.94 11 21 0.64 1.1e+02 4.8 0.4 1 11 573 583 573 587 0.88 12 21 0.00066 0.11 14.1 1.4 2 23 630 650 629 650 0.96 13 21 3.8e-06 0.00063 21.2 0.6 1 23 656 678 656 678 0.96 14 21 4.9e-07 8.2e-05 24.0 1.5 1 23 684 706 684 706 0.98 15 21 3.9e-05 0.0065 18.0 0.7 1 23 712 734 712 734 0.97 16 21 0.0023 0.38 12.5 0.3 1 23 740 762 740 762 0.96 17 21 1.6 2.6e+02 3.5 5.8 2 23 791 811 790 811 0.95 18 21 1.5e-06 0.00025 22.5 1.7 1 23 817 839 817 839 0.97 19 21 1.4e-06 0.00023 22.6 2.0 1 23 845 867 845 867 0.98 20 21 1.1e-06 0.00019 22.8 0.4 1 23 873 895 873 895 0.97 21 21 1e-05 0.0017 19.8 2.2 1 23 901 923 901 923 0.97
Sequence Information
- Coding Sequence
- ATGCCTTACACCAACGCCGAAATTTGTCGTGTTTGTGAAAGCACAGAAGATTTAGAAATgatattcaaaaaggaaaacgaaGAAGTATTATCTATGCTTAATTCAATATCGTTCTCGGTGATAAACATTGACGATCGCTTACCACCGTTTATTTGTTTACAATGCATACTAAGTCTAGAAGGCACTTGCTCCTTTAAATCGCTCTACGAAAACACGTGCAGAAAATTTAAACTCTCGCCGTTTGTTCATATGCAGAGGAAGGGATATTCAGAAAAAACTGTAGAAAAACCTTGGGTTCATAGCAAAGTGAAGCACGTTCAGCACAATAACATAGAAGAAATCGATAGAAAGAATAACATTCTAGGCCAGcacGATAGAAAGTGTGGAGCAAATCTTTTAGTTAGCGATGAGAAATCAGCAGTCTTCAAAGCAGACTCGAATTGGGAAGAAGACGAGCATTACCGTACAGCCAGTGATTCagtaaatcaaataataaatagaagCTGCCAGGAAGTGGTCGTAAAAGAAGAAGTTCTACTATCTGATGAATTCGAAGACAATGAGCATGGAAACGGAACGCCAACTTCAACGGATAATGGagaaacaatgaataaaatATGCAAGGAATGTGGTATGCCATTTTCACAAGCTACACGTTTGAGAAAGCATCTGGCGTGCAATTCTGAATGCCAGAAATGTGGGAAAACGTACGAATGCGTCGGCCTGTTGAAAAAGCATAAAAAGTGGAAACGTTTTCGGGGAGACGTAGATTCAATACCAAAGACAACGGCGCTCTCTGGAGATTTGACCGCAGAAGGCAAAATTATAGAATATGCAAACTTTTCGATTAAAATTCTTGACAATGATAACGTCGATAAGAATACAAAGTTCCTAGAGACTCGTGAAAAGCATGAAAGTGAGtCTGGAAATACGCAATCAATCAATGTCGATCCAATCACGGCTGAAAACTCGAATTCTGATCATACGACTGAGGAACTACAATGTTCATCAGTTGAAAATGCAAACAGAAAACCAAAATCCTGCAACACATTCACCTGCGATCAGTGTGGGCGACGTTTAAAGGGACAACGCAATTATGCAGTGCATAAGCGAAGACATGCTAATCCTACTCGCTACAAATGTGATCAATGTGATAGAGCCTACAGTAACTTATCTGCTCTTAACTACCATAAGGAATCGCATATAAATGTAAACCGTTTAAGATGCGATGTTTGTTCAAGTACGTTTTTACACATGAAAAATTTGGTGAATCATCAGAAGCTTCACGTGAATCCGGAACTTTTCAAGTGTCAACAGTGCGGCAAAGTATATAGTGATAAAAGTAGTCTTACAATGCACATTGCAATACACGAAAGTGCTAATTTATACCAGTGTCAATACTGCGACAGAAAATATTCGCACATCGCACGAGTGAAGGAGCATGAGAAAACACATTTAAATGTGGATCTTCGATGTAAATTTTGTGGCAAAACTTTCCGCAACCGAACGAACTTTAATGATCATGTAATGCTTCACGAAAATCCCCAAGCCTTCCAATGTGAACTATGCGGAAAAACGCTGGCGTCaaatcattgcttgaaaaatcacCAGAGACTACATTCATCAGCACCAGCAAAATGTCGGCAGTGCGGACAGTGCTTTGAAGAGCGTGCACAATTAAGAATTCACGTGGATCTCCATCATTCGATTAAGAAATTTGAATGCAAGCAATGTGATCGTAAATATAGGGTTAATATTGATGAAGTAGTACAAATGAAGtgtttgaaagaaaatgtttgtgtGCAAACGGAAAACGAATCGCACGACGATTCATCAAGTGTTTGTTCGCGAGACGAAGACAATGTAGCTTTAGATACTGAGAAATGGCAATGTGAAAAATGTGGCAAAATATTCCACCCATCAAACATAAAAGAGCATCAAATGTTTCATTTGCTCCCGGAGTTCTTTAAATGTGAGCTTTGCGGTAAAGTTTATACGCGTATGGATAGTTTAAGAAAACATCTGGTATTACACTCGAACCCTGAAACGTTCAAGTGTGATGACTGCACCAGAACATTCACAAATCCATATCAGCTGAAAGAACATCAGATGCTTCATAAGAATCCGAATTGTTTCAAGTGTGAAGTTTGTGGGAAATCTTTTACAAGGCGCCGCATCTTGATTGAACACCAAGTTCGACATTCGAATCCAGAACTTTTCAATTGCGACAAATGCGCTCGACCATTCACAACTTTAGGAGCTTTAAGATACCACGAAGAGTCACACTTGAAGGAAAGTTTGGACGCGTCAAAAACTCAGAAGGAACATTCAGTTGATAAGCCTATCGTGCAACGGGATCAAAACTATATAACATGCCACGATTGCAATAAAAGAATGCATCgtagaaatttcaaacaacatGAAATGATTCACAGAAATCCGGACAGTTTCAAATGCGGTGAATGTGGCAAATTATTTTCACGTAAGGACACGTTGAAAAAGCATCGGTTACTGCATACAAATCCCGATAAATTTACATGTGATGTGTGTGGTAAAATATACACAGATCCTTATCATCTGAAACAACACCGTAAGCTACATCTCAATCCGGACTCGTTTAAATGTGATATTTGTGGGAAGACATTCTCGAAACCTGGAGCTTTAATGCAACATAAATTGCAACATTCAAATCCTGATCTCTTCAAGTGTAAAAAATGTGGTAAAACGTTTCGTAATATCGGATCTTTAAAGTATCACGAGCAACTTCATTCCAAGCGGGGATTGAAATGTAgttga
- Protein Sequence
- MPYTNAEICRVCESTEDLEMIFKKENEEVLSMLNSISFSVINIDDRLPPFICLQCILSLEGTCSFKSLYENTCRKFKLSPFVHMQRKGYSEKTVEKPWVHSKVKHVQHNNIEEIDRKNNILGQHDRKCGANLLVSDEKSAVFKADSNWEEDEHYRTASDSVNQIINRSCQEVVVKEEVLLSDEFEDNEHGNGTPTSTDNGETMNKICKECGMPFSQATRLRKHLACNSECQKCGKTYECVGLLKKHKKWKRFRGDVDSIPKTTALSGDLTAEGKIIEYANFSIKILDNDNVDKNTKFLETREKHESESGNTQSINVDPITAENSNSDHTTEELQCSSVENANRKPKSCNTFTCDQCGRRLKGQRNYAVHKRRHANPTRYKCDQCDRAYSNLSALNYHKESHINVNRLRCDVCSSTFLHMKNLVNHQKLHVNPELFKCQQCGKVYSDKSSLTMHIAIHESANLYQCQYCDRKYSHIARVKEHEKTHLNVDLRCKFCGKTFRNRTNFNDHVMLHENPQAFQCELCGKTLASNHCLKNHQRLHSSAPAKCRQCGQCFEERAQLRIHVDLHHSIKKFECKQCDRKYRVNIDEVVQMKCLKENVCVQTENESHDDSSSVCSRDEDNVALDTEKWQCEKCGKIFHPSNIKEHQMFHLLPEFFKCELCGKVYTRMDSLRKHLVLHSNPETFKCDDCTRTFTNPYQLKEHQMLHKNPNCFKCEVCGKSFTRRRILIEHQVRHSNPELFNCDKCARPFTTLGALRYHEESHLKESLDASKTQKEHSVDKPIVQRDQNYITCHDCNKRMHRRNFKQHEMIHRNPDSFKCGECGKLFSRKDTLKKHRLLHTNPDKFTCDVCGKIYTDPYHLKQHRKLHLNPDSFKCDICGKTFSKPGALMQHKLQHSNPDLFKCKKCGKTFRNIGSLKYHEQLHSKRGLKCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -