Ssin020956.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940879.1:27728403-27737953[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.098 28 5.7 1.1 4 25 20 41 17 41 0.88 2 2 4.3e-06 0.0013 19.6 0.0 4 38 53 87 52 91 0.92
Sequence Information
- Coding Sequence
- ATGCCTACGTTCTATACCAGAAAACACATGTCTGGGAGGGGAGAATGGTCTGAAAGTAGCTTAGAAAATGCAGCCAGAGCTGTTCAAAGTAAGGAAATGGAAGTTAATGCTGCAGCGAAGaaGGAAATTTCAGTgatttcgaatttgaattttaatgcaATCGTGCAAGCCGTTAAGCATTGTTTGATCAAAAAGACACCTGTCAGAGAAGTTGCTCGAGCCTACAGTGTTCCTCGCACCAATTTGCAGCGGCATCTGAAGAAAGTTGGTGAAAATTTTGACGCCATTTCTGCCGTTCAAGACGGTGAATTGATTAAATACCTCCGTAAATGCAGCCAACGATCACCTTCGAATatgattttcCACCAGGATCAAGAAAAGGATCTCCTCCAATGCATTTCGAAATGCGTTGGTCATTTCGACGGGCTCAGCTTCACCGAGCTCCGTGAATTAGCATATCAGTTCGCCAAAAAAATGGATGTTTACCCAGAAGGTTAG
- Protein Sequence
- MPTFYTRKHMSGRGEWSESSLENAARAVQSKEMEVNAAAKKEISVISNLNFNAIVQAVKHCLIKKTPVREVARAYSVPRTNLQRHLKKVGENFDAISAVQDGELIKYLRKCSQRSPSNMIFHQDQEKDLLQCISKCVGHFDGLSFTELRELAYQFAKKMDVYPEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -