Ssin004984.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940877.1:87186815-87187474[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.6e-09 1.9e-06 28.6 0.1 3 37 17 51 15 60 0.94
Sequence Information
- Coding Sequence
- ATGGTATGGACGTATAAGAAGAGAAGTTCGAGACTTAGTTGGTCCATGGAAAACATGAAACAGGCAATTGATGCAGTCTTAAGGAAAACTGCTGGCTATAGAAAAGCAGCTCACCTGTATAGTGTACCACAGACCACATTAGGGCGTCACGTCGCTAAAATAAGGAAAGGCGAGCTGTCTCTTGACTCTACTCCAGGTAACTTCAAGCCCGTGTTTTCCAAACAAGAAGAAGAGGAGCTGGTAAGGTACATTATAGAAATGGAGAAACGTTTGTTTGGTTTAATCACTATCGTCCTACGGAAGCTAGCTTATCAGCTAGCGGAAAAAAATGGCAAAGCTCACAAATTTAATCATGATAAACAAATAGCTGGTGTAGATTGGTTAAAGGGATTCTTGAAGCGCCACCCAGATTTATCTAATCGAAAACCGGAAGCTACATCGGCAGCCCGAGCAATAGGCTTTAATAAAGTGGCTGTGGGTAAATTTTATTCTCTACTCGGGGAAATCTATGACAAATATAATTTGACGCCAGACAGAATTTTTAATTGTGATGAAACTGGCATATCATGCGTCTCAAAAACGAAGAGCAAAATTATTGCAGAAAAGGGGAGAAAACAGGTAGGATCGCTTTCTTCAGCAGAACGAGGACAGTGTTTTTAA
- Protein Sequence
- MVWTYKKRSSRLSWSMENMKQAIDAVLRKTAGYRKAAHLYSVPQTTLGRHVAKIRKGELSLDSTPGNFKPVFSKQEEEELVRYIIEMEKRLFGLITIVLRKLAYQLAEKNGKAHKFNHDKQIAGVDWLKGFLKRHPDLSNRKPEATSAARAIGFNKVAVGKFYSLLGEIYDKYNLTPDRIFNCDETGISCVSKTKSKIIAEKGRKQVGSLSSAERGQCF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00636258;
- 90% Identity
- iTF_01153786;
- 80% Identity
- -