Ssin011695.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940878.1:43177905-43179221[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.2e-10 2.1e-07 31.7 0.0 1 42 17 58 17 61 0.94 2 2 8.2 2.4e+03 -0.5 0.0 13 23 138 149 131 150 0.65
Sequence Information
- Coding Sequence
- atGCCTAGAAAATATGTAAGGAAGCATAACATAGCCAGAGGTCTGTggactgaagaaaatttaaagttggctacagaaaaagtgaaaaaaggcgaaatatccaaaaatgaagCTCAACGACGTTATGGAATCCCGATTCGTACCTTATCTAGACGACTTCATACTGGCAATACGATCAAATCTGGATTAGGACCTCAAGCATCACTTGGACTAGAGAATGAAAAACCTTTAGCATCGTATATTAAACGTTTAGCTAGTGCTGGCTTTGCACCTGATAGGAATACTATTCGTTGCCTTGCTTATCAATTTGCTGAGAAGGTTGGTATTCTacacaaattttccaaggaaaacGAGAAAGCAGGACAACATTGGCTTATGTCGTTTctcgaaagaaataaagatatctCTGTACGGCAAGCAGAAGGTCTTTCGGTGGCAAGAGCGCAAGGTATGAATAGGAAAGAAGTTAATGCGTTTTTTAAGCTGTTAGaagaagaaatggttaaaaataatttgactaataaacctcaaaacattttcaatgttgacgAGAGTGGAATTCAGTTAAAAAATAAGCCGGGAAAAGATTTAACTGCGAAAGGTGCCAGAAACGTTCACGTGATCACACCACGTGAGAAGGGAGAAACTGTTTCTCAGATTGCTTGCTGTAATGCTGAAGGTGTCTTTTTACCTCCTGTATTAATAATGAAAGGCGTTAATAAAAAAGCCGAGTTTGCAGATGGCCTTCCTTATGGATCCGACGTTTATATGAATAAGAAGTCGGCATATATAACTTCAGAATTGTTTATGAGATggttcaaagaacattttttaccaagaaaaccaaagaaaggtaaaactattttgattttggatgGCCACCCTTCTCATTCCAATTCTATAGATCTGCTGGACCTGGCCTatgaaaatgaagtaataatTATATGTTTGCCAAGTCATACTACTCAGGCACTCCAACCAATCGATCGTAGTTTCTTTAAGCCATTAAAGACATATTATCAACAGGAAGCACATTCATGGATGTTAAGAAACAAAGATAGGGTGATCTCAAGGTTACAAGTCGGAACTTTAATTGGGCATGCTTGGGGAAAAGCCGCCACTGTAGGCAATGCAGTGTCAGGTTTCAAAGCTTGTGGGATATTTCCTAGATATACTAGATATAGTACGCAAAAAACATCTTAA
- Protein Sequence
- MPRKYVRKHNIARGLWTEENLKLATEKVKKGEISKNEAQRRYGIPIRTLSRRLHTGNTIKSGLGPQASLGLENEKPLASYIKRLASAGFAPDRNTIRCLAYQFAEKVGILHKFSKENEKAGQHWLMSFLERNKDISVRQAEGLSVARAQGMNRKEVNAFFKLLEEEMVKNNLTNKPQNIFNVDESGIQLKNKPGKDLTAKGARNVHVITPREKGETVSQIACCNAEGVFLPPVLIMKGVNKKAEFADGLPYGSDVYMNKKSAYITSELFMRWFKEHFLPRKPKKGKTILILDGHPSHSNSIDLLDLAYENEVIIICLPSHTTQALQPIDRSFFKPLKTYYQQEAHSWMLRNKDRVISRLQVGTLIGHAWGKAATVGNAVSGFKACGIFPRYTRYSTQKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01375660;
- 90% Identity
- iTF_01375660;
- 80% Identity
- -