Ssin000811.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940877.1:12484106-12485437[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-10 7.4e-08 33.1 0.0 1 41 17 57 17 61 0.89 2 2 7.7 2.2e+03 -0.4 0.0 13 23 133 144 126 145 0.65
Sequence Information
- Coding Sequence
- atGCCTAGAAAATATGTAAGGAAGCATAATATAGCCAGAGGTCTGTggactgaagaaaatttaaagttggctatagaaaaagtgaaaaaaggcgaaatatccaaaaatgaagCTCAACGACGTTATGGAATCCCGATTCGTACCTTATCTGGACGACTTCATACTGGCAATACGATTAAATCTGGATTAGGACCTCAAGAGAATGGAAAACGTTTAGCATCGTATATTAAACGTTTAGCTAGTGCTGGCTTTGCACCTGATAGGAATACTATTCGTTGCCTTGCTTATCAATTTGCTGAGAAGGTTGGTATTCCacacaaattttccaaggaaaaggagaaagcAGGACAACATTGGCTTATGTCGTTTctcgaaagaaataaagatatctCTGTACGGCAAGCAGAAGGTCTTTCGGTGGCAAGAGCGCAAGGTATGAATAGGAAAGAAGTTAATGCGTTTTTTAAGCTGTTAGaagaagaaatggttaaaaataatttgaaaaataaacctcaaaacattttcaatgttgacgAGAGTGGAATTCAGTTAATAAATAAGCCGGGAAAAGTTTTAACGGCGAAAGGTGCCAAAAACGTTCACGTGATCACACCACGTGAGAAGGGAGAAACTGTTTCTCTGATTGCTTACTCACCAACAGTACCTTCTGCAAGTGTTACAGTTGGCTCGCCACCTAAACCATCTACGTCAGTCACGCCTGCTAACGAAGAGTCACCTACAAAGCTTCTTGAACAAGCAAACCCAATCCCAACACTACTTGCCTCAACAGGAAAACGCAAACAAGTTGCTTGTGTTCTCACATCTCCGCAAAACCTagataaaaaaactgataagctgaatttgataaaaagacaAACTAGAAAACGCAAGATTGCTGGTTCCAGATTAACAGGTGCATCGTCAACCTCTCAACGAGATGAGTCTGATTCTATTAAGGATGATAACAATGTGTGCGTTGAGTGTTGGGAACATTATTCTCGAACAAAGAAGAGAACTGACTGGATTAAATGTGGTGTATGCCTAAAATGGCTACATGAGACATGTACAATGTACTTCCCTCACTGCAATAATTGTGGGAGGGAAATAGTACGCAAAAAACATCTTAATCAGACAAAATAA
- Protein Sequence
- MPRKYVRKHNIARGLWTEENLKLAIEKVKKGEISKNEAQRRYGIPIRTLSGRLHTGNTIKSGLGPQENGKRLASYIKRLASAGFAPDRNTIRCLAYQFAEKVGIPHKFSKEKEKAGQHWLMSFLERNKDISVRQAEGLSVARAQGMNRKEVNAFFKLLEEEMVKNNLKNKPQNIFNVDESGIQLINKPGKVLTAKGAKNVHVITPREKGETVSLIAYSPTVPSASVTVGSPPKPSTSVTPANEESPTKLLEQANPIPTLLASTGKRKQVACVLTSPQNLDKKTDKLNLIKRQTRKRKIAGSRLTGASSTSQRDESDSIKDDNNVCVECWEHYSRTKKRTDWIKCGVCLKWLHETCTMYFPHCNNCGREIVRKKHLNQTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -