Ssin032986.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940881.1:14334571-14336397[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-10 8.3e-08 33.0 0.0 1 38 17 54 17 56 0.96 2 2 3.4 9.9e+02 0.7 0.0 13 25 158 171 152 176 0.75
Sequence Information
- Coding Sequence
- atGCCTAGAAAATATGTAAGGAAGCATAATATAGCCAGAGGTCTGGGGACTGAAGGAAATTTAAAGTTGGctatagaaaaagtgaaaaaaggcgaaatatccaaaaatgaagCTCAACGACGTTATGGAATCCCAATTCGTACCTTATCTAGACGACTTCAATACGATCAAATCTGGATTAGGACCTCAAGGTATGCTTTTGATGAGTTTAAGATAAAACGTGGCAATAGGTATCAAGGGGTTGGAGGGGGGGGGGATGCATCACTTGAACTAGAGAATGAAAAACGTTTAGCATCGTATATTAAACGTTTAGCTAGTGCTGGCTTTGCACCTGATAGGAATACTATTCGTTGCCTTGCTTATCAATTTGCTGAGAAGGTTGGTATTCCacacaaattttccaaggaaaaggagaaagcAGGACAACATTGGCTTATGTCGTTTctcgaaagaaataaagatatctCTGTACGGCAAGCAGAAGGTCTTTCGGTGGCAAGAGCGCAAGATCTGCTGGACCTGGccaatgaaaatgaagtaataatTATATGTTTGCCAAGTCATACTACTCAGGCACTCCAACCACTCGATCGTAGTTTCTTTAAGCCATTAAAGACATATTATCAACAGGAAGCACATTCATGGATGTTAAGAAACAAAGATAGGGTGATCTCAAGGTTACAAGTCGGAACTTTAATTGGGCATGCTTGGGGAAAAGCCGCCACTGTAGGCAATGCAGTGTCAGGTTTCAAAGCTTGTGGGATATTTCCCCTCAACCCAAATATCATTCCAGACCATTTCTACGCCATATCTGATCTAACTGATGTAGCACCAACAGTACCTTCTGCAAGTGTTACAGTTGGCTCGCCAAGTAAACCATCTACGTCAGTCACGCCTGCTAACGAAGAGTCACCTACAAAGCTCCTTGAACAAGCAAACCCAATCCCAACACTACTTGCCTCAACAGTAAAACGCAAACAAGTTCCTTGTGTTCTCACATCTCCGCAAAacctagataaaaaaaaaactgataagctgaatttgataaaaaaacaaactagaaaACGCAAGATTGCTGGTTCCAGATTAACAGGTGCATTGTCAACCTCTCAACGAGATGAGTCTGATTCTATTAAGGATGATAATAATGTGTGCGTTGAGTGTTGGGAACATTATTCTCGAACAAAGAAGAGAACTGACTGGATTAAATGTGGTGTATGCCTAAAATGGCTACATAAGACATGTACAATGTACTTCCCCCACTGCAATAATTGTGGGAGGGAAATAGTACGCAAAAAACATCTTAATCAGACAAAATAA
- Protein Sequence
- MPRKYVRKHNIARGLGTEGNLKLAIEKVKKGEISKNEAQRRYGIPIRTLSRRLQYDQIWIRTSRYAFDEFKIKRGNRYQGVGGGGDASLELENEKRLASYIKRLASAGFAPDRNTIRCLAYQFAEKVGIPHKFSKEKEKAGQHWLMSFLERNKDISVRQAEGLSVARAQDLLDLANENEVIIICLPSHTTQALQPLDRSFFKPLKTYYQQEAHSWMLRNKDRVISRLQVGTLIGHAWGKAATVGNAVSGFKACGIFPLNPNIIPDHFYAISDLTDVAPTVPSASVTVGSPSKPSTSVTPANEESPTKLLEQANPIPTLLASTVKRKQVPCVLTSPQNLDKKKTDKLNLIKKQTRKRKIAGSRLTGALSTSQRDESDSIKDDNNVCVECWEHYSRTKKRTDWIKCGVCLKWLHKTCTMYFPHCNNCGREIVRKKHLNQTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -