Ssin030770.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940880.1:82288375-82291066[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-11 1.8e-08 35.1 0.0 1 42 17 58 17 61 0.93 2 2 6.6 1.9e+03 -0.2 0.0 13 23 138 149 131 151 0.68
Sequence Information
- Coding Sequence
- atGCCTAGAAAATATGTAAGGAAGCATAATATAGCCAGAGGTCTGTggactgaagaaaatttaaagttggctatagaaaaagtgaaaaaaggcgaaatatccaaaaatgaagCTCAACGACGTTATGGAATCCCGATTCGTACCTTCTCTAGACGAGTTCATACTGGCAATACGATCAAATCTGGATTAGGACCTCAAGCATCACTTGGACTAGAGAATGAAAAACGTTTAGCATCGTATATTAAACGTTTAGCTAGTGCTGGCTTTGCACCTGATAGGAATAATATTCGTTGCCTTGCTTATCAATTTGCTGAGAAGGTTGGTATTCCacacaaattttccaaggaaaaggagaaagcAGGACAACATTGGCTTATGTCGTTTctcgaaagaaataaagatatctCTGTACGGCAAGCAGAAGGTCTTTCGGTGGCAAGAGCGCAAGCACATTCATGGATGTTAAGAAACAATGATAGGGTGATCTCAAGGTTACAAGTCGGAACTTTAATTGGGCATGCTTGGGGAAAAGCCGCCACTGTAGGCAATGCAGTGTCAGGTTTCAAAGCTTGTGGGATATTTCCCCTGAACCCAAATATCATTCCAGACCATTTCTTCGCCATATCTGATCTAACTGATGTAGCGCCAACAGTACTTTCTGCAAGTGTTACAGTTGGCTCGCCACCTAAACCATCTACGTCAGTCACGCCTGCTAACGAAGAGTCACCTACAAAGCTCCTTGAACAAGCAAACCCAATCCCAACACTACTTGCCTCAACActaTCAAGCTCATCAAGCCAACTGACAAACGACGATCTGTTGAGTCGCTGTTTGGGTAGATTCACACAGAATAATAACGAGATTTTTAACTCTATCGTGTGGCAACTGGCACCCAAGACCACTTCGAGCGGCAAAAAAGTACTGGATATAGCGGCTGATATTGCTGTATGTACTTTTAATGATGGTCTGAGCAGCATCATGGACATAATGAACCTTTTGGGTCTGACTATAGGCCAAAAATGTTATAATGTTTGCCTAGAAGTCGATGCACTCCGCATCGATCTGGCTGAGGCATCCATATCGGAAGCGGCAAGAGATGCGCGCTTGAGCTCAAGATCGTCGAGAAGGACAGAAGAGGAGGAAAATCGTGCTGCAGAAGGTCAATTATATGGAGCTGGCATCGCGGACTGa
- Protein Sequence
- MPRKYVRKHNIARGLWTEENLKLAIEKVKKGEISKNEAQRRYGIPIRTFSRRVHTGNTIKSGLGPQASLGLENEKRLASYIKRLASAGFAPDRNNIRCLAYQFAEKVGIPHKFSKEKEKAGQHWLMSFLERNKDISVRQAEGLSVARAQAHSWMLRNNDRVISRLQVGTLIGHAWGKAATVGNAVSGFKACGIFPLNPNIIPDHFFAISDLTDVAPTVLSASVTVGSPPKPSTSVTPANEESPTKLLEQANPIPTLLASTLSSSSSQLTNDDLLSRCLGRFTQNNNEIFNSIVWQLAPKTTSSGKKVLDIAADIAVCTFNDGLSSIMDIMNLLGLTIGQKCYNVCLEVDALRIDLAEASISEAARDARLSSRSSRRTEEEENRAAEGQLYGAGIAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -