Ssin027803.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940880.1:34277376-34278918[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-11 6.4e-09 36.5 0.0 1 42 17 58 17 61 0.94 2 2 9.9 2.9e+03 -0.8 0.0 13 23 138 149 132 150 0.70
Sequence Information
- Coding Sequence
- atGCCTAGAAAATATGTAAGGAAGCATAATATAGCCAGAGGTCTGTggactgaagaaaatttaaaattggctatagaaaaagtgaaaaaaggcgAAGTATCCAAAAATGAAGCTCAACGACGTTATGGAATCCCGATTCGTACCTTATCTAGACGACTTCATACTGGCAATACGATCAAATCTGGATTAGGACCTCAAGCATCACTTGGACTAGAGAATGAAAAACGTTTAGCATCGTATATTAAACGTTTAGCTAGTGCTGGCTTTGCACCTGATAGGAATACTATTCGTTGCCTTGCTTATCAATTTGCTGAGAAAGTTGGTATTCCacacaaattttccaaggaaaaggACAAAGCAGGACAACATTGGCTTATGTCGTTTctcgaaagaaataaagatatctCTGTACGGCAAGCAGAAGGTCTTTCGGTGGCAAGAGCGCAAGGTATGAATAGGAAAGAAGTTAATGCGTTTTTTAAGCTGTTAGaagaagaaatggttaaaaataatttgactaataaacctcaaaacattttcaatgttgacgAGAGTGGAATTCAGTTAATAAATAAGCCGGGAAAAGTTTTAACTGCGAAAGGTGCCAAAAACGTTCACGTGATCACACCACGTGAGAAGGGAGAAACTGTTTCTCTGGTTGCTTGCTGTAATGCTGAAGGTGTCTTTTTACCTCCTGTATTAATAATGAAAGGCGTTAATAAAAAAGCCGAGTTTGCAGATGGCCTTCCTTATGGATCCAACGTTTATATGAATAAGAAGTCGGCATATATAACTTCAGAATTGTTTATGAGATggttcaaagaacattttttaccaagaaaaccaaagaagggtaaaactattttgattttggatgGCCACCCTTCTCATTCCAATTTTATAGATCTGCTGGACCTGGccaatgaaaatgaaGTTACAAGTGGAACTTTAATTGGGCATGCTTGGGGAAAAGCCGCCACTGTAGGCAATGCAGTGTCAGGTTTAAAAGCTTGTGGGATATTTCCCCTCGACCCAAATATCATTCCAGACCATTTCTTCGCCATATCTGATCTAACTGATGTAGCGCCAACAGTACCTTCTGCAAGTGTTACAGTTGGCTCGCCACCTAAACCATCTACATCAGTCACGCCTGCTAACGAAGAGTCACCTACAAAGCTCCTTGAACAAGCAAACCCAATCCCAACACTACTTGCCTCAACAGTAAAACGCAAACAAGTTGCTTGTGTTCTCACATCTCCGCAAAACCTAGATAAAAAACTGATAAGgtga
- Protein Sequence
- MPRKYVRKHNIARGLWTEENLKLAIEKVKKGEVSKNEAQRRYGIPIRTLSRRLHTGNTIKSGLGPQASLGLENEKRLASYIKRLASAGFAPDRNTIRCLAYQFAEKVGIPHKFSKEKDKAGQHWLMSFLERNKDISVRQAEGLSVARAQGMNRKEVNAFFKLLEEEMVKNNLTNKPQNIFNVDESGIQLINKPGKVLTAKGAKNVHVITPREKGETVSLVACCNAEGVFLPPVLIMKGVNKKAEFADGLPYGSNVYMNKKSAYITSELFMRWFKEHFLPRKPKKGKTILILDGHPSHSNFIDLLDLANENEVTSGTLIGHAWGKAATVGNAVSGLKACGIFPLDPNIIPDHFFAISDLTDVAPTVPSASVTVGSPPKPSTSVTPANEESPTKLLEQANPIPTLLASTVKRKQVACVLTSPQNLDKKLIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01375692; iTF_01375667; iTF_01375677;
- 90% Identity
- -
- 80% Identity
- -