Ssin012614.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940878.1:56395152-56396606[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-10 4.4e-08 33.9 0.0 1 42 17 58 17 61 0.93 2 2 0.36 1e+02 3.9 0.0 12 26 137 152 131 152 0.81
Sequence Information
- Coding Sequence
- atGCCTAGAAAATATGTAAGGAAGCATAATACAGCCAGAGGTCTGTGgactaaagaaaatttaaagttggctatagaaaaagtgaaaaaaggcgaaatatccaaaaatgaagCTCAACGACGTTATGAAATCCCGATTCGTACCTTATCTAGACGACTTCATACTGGCAATACGATCAAATCTGGATTAGGACCTCAAGCATCACTTGGACTAGAGAATGAAAAACGTTTAGCATCGTATATTAAACGTTTAGCTAGTGCTGGCTTTGCACCTGATAGGAATACTATTCGTTGCCTTGCTTATTATTTTGCTGAGAAGGTTGGTATTCCacacaaattttccaaggaaaaggagaaagcAGGACAACATTGGCTTGTGTCGTTTctcgaaagaaataaagatatctCTGTACGGCAAGCAGAAGGTCTTTCGGTGGCAAGAGCGCAAGACCATTTCTTCGCCATATCTGATCTAACTGATGTAGCGCCAACAGTACCTTCTGCAGGTGTTACAGTTGGCTCCCCACCTAAACCATCTACGTCAGTCACGCCTGCTAACGAAGAGTCACCTACAAAGCTCCTTGAACAAACAAACGTAAACAAGTAA
- Protein Sequence
- MPRKYVRKHNTARGLWTKENLKLAIEKVKKGEISKNEAQRRYEIPIRTLSRRLHTGNTIKSGLGPQASLGLENEKRLASYIKRLASAGFAPDRNTIRCLAYYFAEKVGIPHKFSKEKEKAGQHWLVSFLERNKDISVRQAEGLSVARAQDHFFAISDLTDVAPTVPSAGVTVGSPPKPSTSVTPANEESPTKLLEQTNVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -