Ssin012711.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940878.1:57399532-57401230[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-12 2e-09 38.1 0.0 1 42 17 58 17 61 0.94 2 2 9.5 2.7e+03 -0.7 0.1 16 24 134 142 131 150 0.62
Sequence Information
- Coding Sequence
- atGCCTAGAAAATATATAAGGAAGCATAATATAGCTAGAGGTCTGTggactgaagaaaatttaaagttggctatagaaaaagtgaaaaaaggcgaaatatccaaaaatgaagCTCAACGACGTTATGGAATCCCGATTAGTACCTTATCTAGACGACTTCATACTGGCAATACGATCAAATCTAGATTAGGACCTCAAGCATCACTTGGACTAGAGAATGAAAAACGTTTAGCATCGTATATTAAACGTTTAGCTAGTGCTGGCTTTGCACCTGATAGGAATACTATTCGTTGCCTTGCTTATTATTTTGCTGAGAAGGTTGGTATTccacacaaattttccaaagaaaaggAGAAAGCAGGACAACATTGGCTTATGTCGTTTctcgaaagaaataaagatatctCTGTACGGCAAGCACAAGGTCTTTCGGTGGCAAGAGCGCAAGGTATGAATAGGAAAGAAGTTAATGCGTTTTTTAAGCTGTTAGaagaagaaatggttaaaaataatttcactaataaacctcaaaacattttcaatgttgacgAGAATGGAATTCAGTTAATAAATAAGCCGGGAAAAGTTTTAACTGTGAAAGGTGCCAAAAACGTTCACGTGATCACACCACGTGAAAAGGGAGAAACTGTTTCTCTGATTGCTTGCTGTAATGCTGAAGGTGTCTTTTTACCTCTTGTATTAATAATGAAAGGCGTTAATAAAAAAGCCGAGTTTGCAGATGGCCTTCCTTATGGATCCGACGTTTATATGAGTAAGAAGTCGGCATATATAACTTCAGAATTGTTTATGAGATggttcaaagaacattttttaccaagaaaaccaaagaaaggtaaaactattttgattttggatgGCCACCCTTCTCATTCCAATTCTATAGATCTGCTGGACCTGGccaatgaaaatgaagtaataatTATATGTTTGCCAAGTCATACTACTCAGGCACTCCAACCACTCGATCGTAGTTTCTTTAAGCCATTAAAGACATATTATCAACAGGAAGCACATTCATGGATGCTAAGAAAAAAAGATAGGGTGATCTCAAGGTTACAAGTCGGAACTTTAATTGGGCATGCTTGGGGAAAAGCCGCCACTGCAGGCAATGCAGTGTCAGGTTTCAAAGCTTGTGGGATATTTCCCCTGAACCTAAATATCATTCCAGACCATTTCTTCGCCATATCTGATCTAACTGATGTAGCGCCAACAGTACCTTCTGCAAGTGTTACAGTTGGCTCGCCACCTAAACCATCTACGTCAGTCACGCCTGCTAACGAAGAGTCACCTACAAAGCTCCTTGAACAAGCAAACCCAATCCCAACACTACTTGCCTCAACAGTAAAACGCAAACAAGTTGCTTGTGTTCTCACATCTCCGCAAAACCTagataaaaaaactgataagctgaatttgataaaaagacaAACTAGAAAACGCAAGATTGCTGGTTCCAGATTAACAGGTGCATCGTCAACCTCTCAACGAGATGAGTCTGATTCTATAGTCATATCCTCGGAAATTCCGATGACATCACCACCAAataattctgtaacacaacaagacactctattttaa
- Protein Sequence
- MPRKYIRKHNIARGLWTEENLKLAIEKVKKGEISKNEAQRRYGIPISTLSRRLHTGNTIKSRLGPQASLGLENEKRLASYIKRLASAGFAPDRNTIRCLAYYFAEKVGIPHKFSKEKEKAGQHWLMSFLERNKDISVRQAQGLSVARAQGMNRKEVNAFFKLLEEEMVKNNFTNKPQNIFNVDENGIQLINKPGKVLTVKGAKNVHVITPREKGETVSLIACCNAEGVFLPLVLIMKGVNKKAEFADGLPYGSDVYMSKKSAYITSELFMRWFKEHFLPRKPKKGKTILILDGHPSHSNSIDLLDLANENEVIIICLPSHTTQALQPLDRSFFKPLKTYYQQEAHSWMLRKKDRVISRLQVGTLIGHAWGKAATAGNAVSGFKACGIFPLNLNIIPDHFFAISDLTDVAPTVPSASVTVGSPPKPSTSVTPANEESPTKLLEQANPIPTLLASTVKRKQVACVLTSPQNLDKKTDKLNLIKRQTRKRKIAGSRLTGASSTSQRDESDSIVISSEIPMTSPPNNSVTQQDTLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01375689;
- 90% Identity
- iTF_01375668;
- 80% Identity
- -