Scal006698.1
Basic Information
- Insect
- Stomoxys calcitrans
- Gene Symbol
- -
- Assembly
- GCA_001015335.1
- Location
- NW:309550-312858[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0083 0.38 10.9 0.6 2 23 244 267 243 267 0.82 2 11 0.27 13 6.2 0.5 1 23 320 343 320 343 0.94 3 11 0.088 4.1 7.7 0.2 2 23 363 385 362 385 0.88 4 11 4.1 1.9e+02 2.5 0.1 2 12 439 449 438 463 0.85 5 11 0.038 1.8 8.8 3.9 1 23 531 554 531 555 0.95 6 11 0.0065 0.3 11.3 1.1 1 23 667 691 667 691 0.96 7 11 2.7 1.2e+02 3.0 7.3 1 23 740 763 740 763 0.94 8 11 2.8e-06 0.00013 21.9 1.5 1 23 886 909 886 909 0.97 9 11 0.13 6 7.2 2.4 1 23 956 979 956 979 0.97 10 11 0.00052 0.024 14.7 0.6 2 23 986 1008 985 1008 0.95 11 11 0.11 5.1 7.4 0.1 3 23 1044 1063 1043 1063 0.92
Sequence Information
- Coding Sequence
- ATGGTATACAAAATAAGTGACAATTGTGAAGCTTCAGCCACACAAGCTCAGCAAGCTGATATGGAAAGCATCTACAGTTTACAAAATGTTCCCGTGGAAATAAAAGAAGAGGAAGAATTGATTATAGATGACATAGATGATTCCAATGTACGATGGTGCTTCATTGGCGGtctggatgatgatgatgaagaggaTGAAATTGAGGATAAAGACATGTCTTTCAAAATAAGTCCGTCCACAACAGGCGCAATGGCGAGCTCGTGCAGCTTTTATGAAGTCCAACCACAGCGGCAATTGCTTCCAATACCTGTACAGGAAGATGATGTCATTGAAATTACTGATGAAGAAGACGATATTTATGATAGTTTAAATAACAGCTTTAGTAGTTGTAATGATGATATAGGAGTAGTAAACGAGCCCCTAGAATCCAGTTTCTGTATTGGATATTCAGGCATAGGTCAAGAGTTGCCAAAGTCTGAGGAGTTTGATAAGGAGGATAGAACGGACTCAGTTGTAACCATGAGCAAGTTAAAAAGCCCCTTCAAATCTAATATGGTTGCTGATGAAGTAAAAGATGGTAACAGATTGCTAAATGACAACAATTTTGTCGTCGGCAGAAGAACTCGCAGAAGCAAAGGTTTGAATGGTCTTACGCTGCTGGAGCACAGTGAGGAAAACCAATGTGTCACAGCCGTAAAAGATTTGTTGGCCCGCAAATACATGAAAATCAAATGTCACATTTGTGGTGAAACGTTCTCCTTTAGTCCCTACAATTGGCTTAAACACATACGTGACTTGCACCAGAGTTTCTATGCCAAAATGCTTGCCGCATTTCGCTTTCAGACTGAAAATTTGGCATTTTGTATACTGTGCAAGCTTAATATAAATTCCAAAGTCAATCACATGTTCCATTACATTTGGAATCATTGCGAGGAAAGCCCTAGTGGTATAGAAATATTTGTGTGCACCATCTGCGGGCATGCTGATGCATCTATCTTCGATTTGAAACAACATCAAAAGGAAACTCATGCTGCCGAGGAAAAAGCAAACAGCTTTAGCTCAAATGATATTAAGGCGGAAGGCGTTGAATGTCCTAAATGTcggcaaattttcaaaaacaatgcTGCCATTGAGCTGCATTTCTTTTCCGAACACAGTCGAGAATTCTGGGGAAAATTCCGCTATAGTTGTCACTTGTGTGTTCAAACATTTGAGGGGTGTAAAAAAAACTACCTGGAGCACATGATGAATGTGCATAAGCTGAACAATTGGAAAGCTCTAAAGTTGCGTAAATTCGATAATGGCCAGTACTTGCAGTGTTCAGaatgcttaaaaattttcaccaaaatcgagGACACCTCTAAGTTGTTGGCTCATTTTCTAATTCACCAAGAGAACTGTTTTTGGAGCTGCAAATTTTGTGAGGCAACGAACCGCTTCCAAGAATTGCCCGCCATGCATTTATGTACATCTATGAAGAACTTCTATCACCACAAACACTCGCATAAAGCCAATGAAGCCGCCATGGAGGAAAGCAAAGATGCAATTAGAAAAATAAGCAGCTGGAACGAATTTGAGGTGTATGTCAAGCATGTGTGCCCATTTTGCAAATACGAATTCGAACATTTCGATGAATGGCGGCAACATGTGCGTGAGATCCACCACATCAACACGTTAGAGGGACTAAACATGTCGCCCATACCGGGGGATGAAGATCAGTTACAGTGCATGGAGTGTTTGGCACAGGTAACTAAATCTGCCGTCGAGCTACACAAACATCGTTTTCAACATTTGCCTTTTATGCCCTACCTGTGCCGACAATGTCTAGAACCTCTGGCCACATACAGCTTAGCTTTGAACCATGCACTACAGGGGTGCTGCGAGGAGAATGCTGATTTAAGCACAAACCATAAGGAAACACTGGTAGCAGCACAGACAAACAAAGTTTACAAACTAAAAACTGAACCTGAGTATGCCACACCTCACAGCTATCTAAGCTACTGTTGTCCGCTGTGCAATAATAAGAAATTTCCCGATCTTGAAGCTTTGACAAAACATTTTCGCATTGTGCACAATAACTTTCAGCAATATTTTACAAAGGCATCTTTAAAGGATGTGGCAAataaaactatgtgcaaaatatgtCGCAATCTGCTGAACAGCAATATCAGTGGAGTAATTGTGCCCCACTATTTTCATCATTTGGATGAGAAGCCCTTTAGATGTAGGAAATGCAATCGAACTTTTAGTCTGCATAAGCGGGCCATGCATCATGTGAAAAGCTATCACTATAACAGCTCCGATATGCCCGCTGAGTTGGAGATAAAACAGGAAAAAGAAGCCTACCAACTACGCTCCGTTAAAAAGGAGCAGGATAAGGAGAAGGcagaaaaaagtcgaaaatccTTAATAAAAACAGAAGAAGAAGTTGAGGCAAAAATTTCACGAAAGGCCTTAAAGAGAGGAAACGCAGCGGTTATAGCAGCtgtaccaaaaacaaaaataaaatcggaaATTGAGGATGATCCCACCAAGAGCGTCATAAAGAATGAGCTGCTCGAATCCGATAGAACCATAGCAGCAGAAAACTCTGAGGACCAGTCTTTTTTTGATGCGAATGCTAAATTATTTCAGGAATTTAAGGATTTTATAGCATTTGCTTGTCCCGAATGCAACAAGTCATTCAAATCGCTGCACCTTTGGGAGCGCCACATAAAAACCCAGCACTCGTTTTTCAAAGCATCTCAACTTAGTGTGAGTGATGCAAAAACCGGCCAGTTAAAATGTCCCGATTGTCAGTTAGTACTCCGCGAACATATATCGAGACAACGGCGTCATCGATTAACACATTTGCCCCACGCCTCCTTTGTATGCACCATTTGCAAGATGCGTTCAACACAAATCTGCTCCATGTACATTCACATGCGCAACCTGCACTTTGCCCAAACTTCACAAAAATGTCCGCTCTGTTCAAAGGTTTTCAAAACTCCTTATGCGAAATCTTTGCATATGAAGGAGAGCCATGCCCGCAGAAGCTGGCCCAAGGATATGTGTGTTTTATGTTTCCTTACCGTCGATGAAATGGGATCACACATACAAAAGAATCACTTGGttcgcaaaaaaaatatttgtgaaatttgTGGTATATCCTTTGCAAAAGGTCTGGAGCAACACATGGCCAgcaaacacccaaaaggaaaggTAAACGGCGTCAAGCGAAAATTGTCACCATCCGAAGGGATTGTGGTTGCTGCAAAGCTCAAAAAGAAATCCGACGAAATAAAAACCAATGGAAGAAAATCCAAATAG
- Protein Sequence
- MVYKISDNCEASATQAQQADMESIYSLQNVPVEIKEEEELIIDDIDDSNVRWCFIGGLDDDDEEDEIEDKDMSFKISPSTTGAMASSCSFYEVQPQRQLLPIPVQEDDVIEITDEEDDIYDSLNNSFSSCNDDIGVVNEPLESSFCIGYSGIGQELPKSEEFDKEDRTDSVVTMSKLKSPFKSNMVADEVKDGNRLLNDNNFVVGRRTRRSKGLNGLTLLEHSEENQCVTAVKDLLARKYMKIKCHICGETFSFSPYNWLKHIRDLHQSFYAKMLAAFRFQTENLAFCILCKLNINSKVNHMFHYIWNHCEESPSGIEIFVCTICGHADASIFDLKQHQKETHAAEEKANSFSSNDIKAEGVECPKCRQIFKNNAAIELHFFSEHSREFWGKFRYSCHLCVQTFEGCKKNYLEHMMNVHKLNNWKALKLRKFDNGQYLQCSECLKIFTKIEDTSKLLAHFLIHQENCFWSCKFCEATNRFQELPAMHLCTSMKNFYHHKHSHKANEAAMEESKDAIRKISSWNEFEVYVKHVCPFCKYEFEHFDEWRQHVREIHHINTLEGLNMSPIPGDEDQLQCMECLAQVTKSAVELHKHRFQHLPFMPYLCRQCLEPLATYSLALNHALQGCCEENADLSTNHKETLVAAQTNKVYKLKTEPEYATPHSYLSYCCPLCNNKKFPDLEALTKHFRIVHNNFQQYFTKASLKDVANKTMCKICRNLLNSNISGVIVPHYFHHLDEKPFRCRKCNRTFSLHKRAMHHVKSYHYNSSDMPAELEIKQEKEAYQLRSVKKEQDKEKAEKSRKSLIKTEEEVEAKISRKALKRGNAAVIAAVPKTKIKSEIEDDPTKSVIKNELLESDRTIAAENSEDQSFFDANAKLFQEFKDFIAFACPECNKSFKSLHLWERHIKTQHSFFKASQLSVSDAKTGQLKCPDCQLVLREHISRQRRHRLTHLPHASFVCTICKMRSTQICSMYIHMRNLHFAQTSQKCPLCSKVFKTPYAKSLHMKESHARRSWPKDMCVLCFLTVDEMGSHIQKNHLVRKKNICEICGISFAKGLEQHMASKHPKGKVNGVKRKLSPSEGIVVAAKLKKKSDEIKTNGRKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -