Scal012012.1
Basic Information
- Insect
- Stomoxys calcitrans
- Gene Symbol
- -
- Assembly
- GCA_001015335.1
- Location
- NW:9418-14122[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.2 1.5e+02 2.8 0.3 2 23 13 35 12 35 0.88 2 18 3.5 1.6e+02 2.7 0.8 6 23 45 63 39 63 0.95 3 18 0.011 0.52 10.5 3.8 2 23 97 118 96 119 0.95 4 18 0.051 2.3 8.5 0.2 6 23 129 146 129 146 0.99 5 18 7.8 3.6e+02 1.6 4.2 1 21 152 172 152 175 0.70 6 18 0.38 18 5.7 0.4 3 23 219 240 217 240 0.88 7 18 0.0038 0.18 12.0 0.4 6 23 250 267 250 267 0.98 8 18 0.00021 0.0096 16.0 3.2 1 23 273 296 273 296 0.98 9 18 3.2 1.5e+02 2.8 0.3 2 23 458 480 457 480 0.88 10 18 3.5 1.6e+02 2.7 0.8 6 23 490 508 484 508 0.95 11 18 0.011 0.52 10.5 3.8 2 23 542 563 541 564 0.95 12 18 0.051 2.3 8.5 0.2 6 23 574 591 574 591 0.99 13 18 7.8 3.6e+02 1.6 4.2 1 21 597 617 597 620 0.70 14 18 0.38 18 5.7 0.4 3 23 664 685 662 685 0.88 15 18 0.0038 0.18 12.0 0.4 6 23 695 712 695 712 0.98 16 18 0.00021 0.0096 16.0 3.2 1 23 718 741 718 741 0.98 17 18 0.0056 0.26 11.5 0.7 2 23 772 794 771 794 0.93 18 18 0.47 22 5.4 1.3 3 23 799 820 798 820 0.90
Sequence Information
- Coding Sequence
- ATGGATGAAACGATATCTCAGTGGATGCCTCTGCTAAAGTGTGATATATGCAAATTATTGGTGAGCAACTACACTCGTTTAGAGGAGCATTTTCTTTATGGACACCAAATGGAGAAATGTTACATTATATGTTGCAATCGCAAGCTTACACAACGTGTCATGATCGAAGAGCACATTCGTCGAATCCATTGCGATGGGCTTCCCAAGGATATATCTCTTAGGGGTACGCCTGTGAATGTGAACACACAAGAAATGCTGGAATTTGTACATCATTATATGCCCTGGATAAAATGTGATCTATGTGGGTGTGCGGTCACTCAATatgaaaaactgaaaaaacaCTTTCGTCTGCATCATCCTTATGAGAATTTCCACATATTATGCTGTCAACGTAAGTTTTCCCGGCTCTACAGTATTGCCGAGCACATACGCGTCCATATATCTTTGGGCTCCTATCAGTGTCACATTTGCAATAAACTGCATTTGTCCCGCAGTTATCTGCACTATCATTTAATGGAAACACATAGCATAAATTTGTATCCCACCACAAAgcacttcaatttggctataACCGCCAAGGCAAATTCAGCCATAGCGCGAACGTCATTTGCCGATCTGGATGACTTCATAGCCATGTTCAGGGGAAAATTGGATTGCTACATATGCTCTGAGAAATATATTACATTTACCACATTACAGATACATTTTAGTGCAAAGCATCCCGACAGGTTCTTCTATGTTATGTGTTGTGGCAAAATATTTAGAACACGCAACGATCTGGAGGAGCACATTCATCTACACCTCAATCCGCAAGGCTTCAAATGTGACATCTGTAAAATGTATTTTATCAAGCGTTCACTGTTATTCAGTCACTATCGTACGCGACACCCATACTCTCGCACTGATGCCGTTAGAGAAGTTCAACAGAATTCCTCGGGCAACATTGACAAACTTATCAGCGCATGGCAGACAAGCGTGAAATGTGAATCTACCATAATGCTTGGCGAAGAAGATATCGCCATCAACTATCCCGTATACTTTGTAGCAGGCGCAGAAAGCATGACGCTGGATGAAATTGAGAACTCCATCACACAAATGGAAACCATTGACATAGAAGCTGGGAGTTCTGATGAAGAAATTTCACTGTCCGACTTCGATGTGGTACTAGAAAGTGAAACACCACTGGATGCGATTGAGCCAGAGCTCGAAACAACAATTTCAATAGCAACGGACGACACCGGTGACCATGCCTCAATTAATGGCCAGCTTAACTTGAGGAAAAGGGGAAGAGGTTACTACACCTCATCCGAGGGTATACGCTATACAGAACGCGAAATGGATGAAACGATATCTCAGTGGATGCCTCTGCTAAAGTGTGATATATGCAAATTATTGGTGAGCAACTACACTCGTTTAGAGGAGCATTTTCTTTATGGACACCAAATGGAGAAATGTTACATTATATGTTGCAATCGCAAGCTTACACAACGTGTCATGATCGAAGAGCACATTCGTCGAATCCATTGCGATGGGCTTCCCAAGGATATATCTCTTAGGGGTACGCCTGTGAATGTGAACACACAAGAAATGCTGGAATTTGTACATCATTATATGCCCTGGATAAAATGTGATCTATGTGGGTGTGCGGTCACTCAATatgaaaaactgaaaaaacaCTTTCGTCTGCATCATCCTTATGAGAATTTCCACATATTATGCTGTCAACGTAAGTTTTCCCGGCTCTACAGTATTGCCGAGCACATACGCGTCCATATATCTTTGGGCTCCTATCAGTGTCACATTTGCAATAAACTGCATTTGTCCCGCAGTTATCTGCACTATCATTTAATGGAAACACATAGCATAAATTTGTATCCCACCACAAAgcacttcaatttggctataACCGCCAAGGCAAATTCAGCCATAGCGCGAACGTCATTTGCCGATCTGGATGACTTCATAGCCATGTTCAGGGGAAAATTGGATTGCTACATATGCTCTGAGAAATATATTACATTTACCACATTACAGATACATTTTAGTGCAAAGCATCCCGACAGGTTCTTCTATGTTATGTGTTGTGGCAAAATATTTAGAACACGCAACGATCTGGAGGAGCACATTCATCTACACCTCAATCCGCAAGGCTTCAAATGTGACATCTGTAAAATGTATTTTATCAAGCGTTCACTGTTATTCAGTCACTATCGTACGCGACACCCATACTCTCGCACTGATGCCGTTAGAGAAGTTCAACAGAATTCCTCGGGCAACATTGACAAACTTATCAGCGCATGGCAGACAAGCGTGAAATGTGGTGAATGCAATATGCGTTTCAAAAAATACACTTCACTCGAAGAGCATTTTGCGAGGGACCATGCCGACGAGTCGTGCAGATATTGCAAATACTCCACAACGAATAATTTAGAGTTCTGGGATCATGTTCACGAAGCCCATCCGGCCCAAACAAAAGTTCTGCCGCCCCAAGAGAGTCTTAATAGTACCTTGTGTAATTTAGTTCAAAATATACAATAA
- Protein Sequence
- MDETISQWMPLLKCDICKLLVSNYTRLEEHFLYGHQMEKCYIICCNRKLTQRVMIEEHIRRIHCDGLPKDISLRGTPVNVNTQEMLEFVHHYMPWIKCDLCGCAVTQYEKLKKHFRLHHPYENFHILCCQRKFSRLYSIAEHIRVHISLGSYQCHICNKLHLSRSYLHYHLMETHSINLYPTTKHFNLAITAKANSAIARTSFADLDDFIAMFRGKLDCYICSEKYITFTTLQIHFSAKHPDRFFYVMCCGKIFRTRNDLEEHIHLHLNPQGFKCDICKMYFIKRSLLFSHYRTRHPYSRTDAVREVQQNSSGNIDKLISAWQTSVKCESTIMLGEEDIAINYPVYFVAGAESMTLDEIENSITQMETIDIEAGSSDEEISLSDFDVVLESETPLDAIEPELETTISIATDDTGDHASINGQLNLRKRGRGYYTSSEGIRYTEREMDETISQWMPLLKCDICKLLVSNYTRLEEHFLYGHQMEKCYIICCNRKLTQRVMIEEHIRRIHCDGLPKDISLRGTPVNVNTQEMLEFVHHYMPWIKCDLCGCAVTQYEKLKKHFRLHHPYENFHILCCQRKFSRLYSIAEHIRVHISLGSYQCHICNKLHLSRSYLHYHLMETHSINLYPTTKHFNLAITAKANSAIARTSFADLDDFIAMFRGKLDCYICSEKYITFTTLQIHFSAKHPDRFFYVMCCGKIFRTRNDLEEHIHLHLNPQGFKCDICKMYFIKRSLLFSHYRTRHPYSRTDAVREVQQNSSGNIDKLISAWQTSVKCGECNMRFKKYTSLEEHFARDHADESCRYCKYSTTNNLEFWDHVHEAHPAQTKVLPPQESLNSTLCNLVQNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -