Scal008646.1
Basic Information
- Insect
- Stomoxys calcitrans
- Gene Symbol
- -
- Assembly
- GCA_001015335.1
- Location
- NW:394105-399185[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.1e-06 0.00023 21.0 0.9 1 23 157 180 157 181 0.97 2 12 0.034 1.6 9.0 5.8 2 23 229 251 227 251 0.95 3 12 2.4 1.1e+02 3.2 0.6 1 23 386 409 386 409 0.87 4 12 4.3e-05 0.002 18.1 0.4 1 23 543 566 543 566 0.90 5 12 2.6 1.2e+02 3.1 0.1 2 13 585 596 584 601 0.81 6 12 8.8e-05 0.004 17.2 2.5 2 23 617 639 617 639 0.98 7 12 0.00081 0.037 14.1 3.6 1 23 744 767 744 767 0.97 8 12 0.00018 0.0083 16.2 0.5 1 23 820 843 820 843 0.97 9 12 0.0012 0.054 13.6 0.9 2 23 893 915 892 915 0.96 10 12 0.13 6 7.2 1.1 1 22 989 1010 989 1012 0.90 11 12 0.11 4.9 7.5 1.7 1 20 1064 1083 1064 1085 0.94 12 12 0.0042 0.19 11.9 0.1 2 23 1168 1190 1167 1190 0.95
Sequence Information
- Coding Sequence
- ATGGAAGAATTGGAGCCCTGGAATATGTTTACTACAAACGACGCAAACCCAGACGATGCGGACGTTGGTGGTGGAGAAGAGGAAGGAGGTGGCGAAAAAGAGACCGACGACAATGAAAGGATAGATGATGAGCAAAAAGACGATGAGGAAGAAGTTGACGAACCTTTCGCTATACCATCACCAGTACAGGACATGCAGGTTAAGGAAGAGCCTCAGGACACTGAATTGGAAGAACCCAATCAAACATTCGAAGATGCATTTGGCGATGGCAATGGTTTCGGTTTTCATTCTATACTTCACGGTGATAGAGATATTGCTGAAGATGATGCTTTATTGGATTTCAACGCCGAAAATTCAAACTCTGCCCGTCCTAGCGCTAACAGAACTACACAATCAGGCGAACTTCCTCCTTTGTCGGCGGAAGACGCTTATTTTAGTAAGTTAATTAAATATGATGATGCAATTATCTACATTTGCCCTTCCTGTGGCAAGGAGTTCCGTTCTCAGGAATCTTGGAAAATGCACATGAATACAGTGCATCACTTCAATTCTAGGCGAGGTCTAAATTTCATCCAGTTGGATAAATTGTACCACGAATGCATCGAATGTAATAAGCGAATTGCCATGCATAGCATGGAGAACTTACTAAAACATAAATTCACGCATCTGCCATACCGTTGTTGTAAATGTTTCATATGCAAACGCCAATATAAATACCGACAAGATTTGATGGTCCATTTGAAAATGGCTCATAGAGATGAATTGATCGCAATTGTTAAAGAGGAGCATAAAAATATGCCGCCACGACCAGAAGCACAAAATGCCACCATTCGTTCAATACTGAATAGACCAAGTTCTATACAGGTTGCAAATTCCTCCTCTTCCAATCGTGCAAATATTTCTATTGGTCATGTTAAGGAGAATGCTGTCGATCTTTTTGATAGCGATAACATTGAAGTTCGCAATGAAGTAATAGATGACGACGATGAAGATAATTCTCTGCCAGGAATGCCACCGGCGAAGAGGATTGCCAGAGACTTGCCCTTAGTTGTGGATGATGGCTCAAATACAAATGGTTCGACACAAGATCAGAGAATGTTTGGCAAATTGAGAATATTGGCCGACATTGATGAGTCATTggaagaatatatattattCTTATGTCCTCAATGTGGCTCGGAGTGCGACACTATTGAGCAGTGGCGGCAACACGTTGAATTTTCACACGATTTGGGCACTAGAAAAGGTTTGAACATGAGAGACATTAACCAAGGGGAAGCTCAATGCATCGAATGCAATCAGACCATAACAGCCAATACATTACAAAATCTTCAACTGCATAAATTCACTCATTTGCCCCATAATAAATGGATGAATTGTAAATTATGCTTcaatgaatttaatgccacCAAGGATATTATCAATCACCTTGCTGACAAGCATCATTTAAAACCagaaaaaaagacaacaaacaATGTGAACGATGAAGATAGCCAAGAAGCTCTTGGTTTCGGTGGCGAAGACTACGACGATGTTGTCGGTGTAGCTGATACAAAAAAGCAACAGGGCAGCTATGATATGGGTAGATCTAGACTGGATCGTGATCCTTACGAACAGCATATTGAATATTTATGCCCGCAATGTGGCAAGGAGTTTAGCGACAAAAAATTGTGGAAAAGACATTTGGTTAATGACCATCAGATGGGCGATAtggaaaagttaaattttgtatacatcAACGATCGCCAGTTGAAGTGCAAGGAATGCGATAAAATCATAACGAGTGCATATGGCATACAGAACGCCCAGCAACATCGCATGTCGCACATGCAGTTTAAGAACTTTGCAAAATGTCGCATATGCCGCAAAAAGTACACAGATCGTAAAGGCCTAACCAAACACTTGAGGACAGCTCATGGGATAGGCAACAGAACTATGGGTGGTGCTGGATCGCCAATACCGAATTTTGGTAGCCCCAGCATGAACTCAAATAACCCACACGCCTTCAAATCGAATGCATACCCACAGAGAAGAGAAATCGTTAAACACAGCCATTATACATATGAAATTTGTTACTTGGACGAAGAGGATGATAACGATTTCGATAGGGGCACTGGCCGTGGTGGGGGTGGTGTTAATTCTTCCACTTATGACTTTGCTAAAGGCGATGCTCACTTATATCGTCGATCTTATCCAGCTCCAAAATCGAGTTTTGAACCAATGTCCCGTCACAGATGTGTGGATTGTGGTTCCAGTTTCCCCTCCCATCAGTCATTGCAACATCATATTAAAATCGAACATGAATTTGTTGACTACTCCTACAAAAATTCTCCTCCGAACAGAACGACAAATAATGAAGAGCAGTCAAATGATGCAGACGATTTGTTGGTGCCTAGCAATCGTGTTGGTGAAGTCGTCAAAAGCGAagaacccaccaccgtggagTGCAACTTCATATACATATGCCCCCAGTGTGGTATTGAGTTCAGGCTAAGGCATTTATGGCGTCGTCACATTAATATGGAGCACAATTTCGATAAAAGAGAATCATTGGATTTCCGCATTTTAGACAAATTCCGATTTCAATGCAGGACATGCCATGAGGTGGTGCAAAGTTCTAAGCTTAAAGGCTTACAGGATCATAAATTCCGTCATTGTCCATTTAGGCAATATCTTAAGTGTTTGATATGTGGGCAAGCCTACAACCATAAACCGAATATGATAAGCCATCTGAGGCAGCGTCACAATATTATCGATGCAGAACCGAATGTGCAAGGCAACATGATGGATGGTGTGAATCAAAGAAGCAACCAAtcgagtttttcaaaaaatagttCCTCTTACGGGGCTCCAAAAATTCCCTCCGATTCCAATGCCAATGCGAATGCAAATCGTCCTCCCGGTCTTAAGACCGCAGAAGACGTCATTTCCTACCACAATGCCGTTGACCATGAATCAATCACCTATCATTGTCCCTCTTGTGCAGAAACCTTTGATTCGCATGTTTATTGGCGCAAACATATTGTTGACGAGCACAACTTGAATAGTAGAGAAGGTTTAAATTTCCGCCAACTTGATGACCACCACTACATATGCTTGCAATGCTACAAACGTGTAACGGTCACCCACACCAAGGGGGCGATTGGCCAATTGCAATCGCACAAGTTTAGACATTTGCCCTATAAGTCATTCCATTGTACTGTATGCAATGGTGAGTTTGTGCGCAAGCAAATGTTCTTCAAACATTTGGACAAGATCACCAATAAGTGTAATGGCACAAATGCAGAGGCTGGTGCCACAGGCAATGCAGCAGATCGCAATGATTCGCAGCAAATGGACGAAGATTCGTCCTTCAGAATGTCCGATGGTGGAAATAGTACGATGGTTGAGGCAGATAGTGCTCGACCCTCAGGGAAGAATGTGTGGCCAACACGAGCCTCGTTGCCGGCACAGCCAACCACCTACGACTTGACATCCGAGAATCAGGGCTGTTTCACCCTAAGCTGTCCTCAATGCGGCATTGAATTCGACTCGACTCGTTCTTGGCGGGAGCACATTAACATCGAACATAATCTCAACAGCCGTTCGGtattgaatttcaaaaaaatcaactCAAAACTTCATCTTTGTTTAGAATGCAAAGAGCACGTGAATGGTCGCAAATTGCGCGACTTGCAAGTGCACAAGTTTAAGCATTTACCCTATGGGGCATATCTGCACTGTCGTTTCTGTTCCATGAATTATTTCCACATAAGCAATATGCAAGAGCACTTGAAGAACAAGCATCCCCAAATGGTGCAGAAAATGAAAGTAGACCACTATGAGGAGGATACGGCCAATTTTGAGGCAGAAGAAGAGGAGGATGCAAACAATTTCGCTGGTGGCGATTATGATGATACCATGACAACCCCACCCAAGGCAGACGATGATGAAGAGGAAGAAGAGGGAGAGGGAGATGGTGAGGGCGATGGTGAAGGCGATGGTGAGGGCGACGGTGATGGTGACGACGGCCCACCATGCCCCGAAGATATAGTGGACATTGATTTGTTGGAGGCCGAAGCTGAAATAGAAGAGGTTGATCCTGATAATGTTGAATCCGATGACCAATATCTATTGGGTTAA
- Protein Sequence
- MEELEPWNMFTTNDANPDDADVGGGEEEGGGEKETDDNERIDDEQKDDEEEVDEPFAIPSPVQDMQVKEEPQDTELEEPNQTFEDAFGDGNGFGFHSILHGDRDIAEDDALLDFNAENSNSARPSANRTTQSGELPPLSAEDAYFSKLIKYDDAIIYICPSCGKEFRSQESWKMHMNTVHHFNSRRGLNFIQLDKLYHECIECNKRIAMHSMENLLKHKFTHLPYRCCKCFICKRQYKYRQDLMVHLKMAHRDELIAIVKEEHKNMPPRPEAQNATIRSILNRPSSIQVANSSSSNRANISIGHVKENAVDLFDSDNIEVRNEVIDDDDEDNSLPGMPPAKRIARDLPLVVDDGSNTNGSTQDQRMFGKLRILADIDESLEEYILFLCPQCGSECDTIEQWRQHVEFSHDLGTRKGLNMRDINQGEAQCIECNQTITANTLQNLQLHKFTHLPHNKWMNCKLCFNEFNATKDIINHLADKHHLKPEKKTTNNVNDEDSQEALGFGGEDYDDVVGVADTKKQQGSYDMGRSRLDRDPYEQHIEYLCPQCGKEFSDKKLWKRHLVNDHQMGDMEKLNFVYINDRQLKCKECDKIITSAYGIQNAQQHRMSHMQFKNFAKCRICRKKYTDRKGLTKHLRTAHGIGNRTMGGAGSPIPNFGSPSMNSNNPHAFKSNAYPQRREIVKHSHYTYEICYLDEEDDNDFDRGTGRGGGGVNSSTYDFAKGDAHLYRRSYPAPKSSFEPMSRHRCVDCGSSFPSHQSLQHHIKIEHEFVDYSYKNSPPNRTTNNEEQSNDADDLLVPSNRVGEVVKSEEPTTVECNFIYICPQCGIEFRLRHLWRRHINMEHNFDKRESLDFRILDKFRFQCRTCHEVVQSSKLKGLQDHKFRHCPFRQYLKCLICGQAYNHKPNMISHLRQRHNIIDAEPNVQGNMMDGVNQRSNQSSFSKNSSSYGAPKIPSDSNANANANRPPGLKTAEDVISYHNAVDHESITYHCPSCAETFDSHVYWRKHIVDEHNLNSREGLNFRQLDDHHYICLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFHCTVCNGEFVRKQMFFKHLDKITNKCNGTNAEAGATGNAADRNDSQQMDEDSSFRMSDGGNSTMVEADSARPSGKNVWPTRASLPAQPTTYDLTSENQGCFTLSCPQCGIEFDSTRSWREHINIEHNLNSRSVLNFKKINSKLHLCLECKEHVNGRKLRDLQVHKFKHLPYGAYLHCRFCSMNYFHISNMQEHLKNKHPQMVQKMKVDHYEEDTANFEAEEEEDANNFAGGDYDDTMTTPPKADDDEEEEEGEGDGEGDGEGDGEGDGDGDDGPPCPEDIVDIDLLEAEAEIEEVDPDNVESDDQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -