Scal011470.1
Basic Information
- Insect
- Stomoxys calcitrans
- Gene Symbol
- -
- Assembly
- GCA_001015335.1
- Location
- NW:82361-94876[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0012 0.055 13.6 1.8 1 23 125 147 125 147 0.98 2 14 0.00012 0.0056 16.7 0.4 3 23 422 442 420 442 0.97 3 14 1 46 4.4 3.1 1 23 517 540 517 540 0.96 4 14 0.09 4.2 7.7 2.0 2 23 629 650 628 650 0.95 5 14 0.02 0.92 9.7 1.4 2 23 916 937 915 937 0.95 6 14 0.04 1.8 8.8 0.5 1 23 943 966 943 966 0.93 7 14 2.8 1.3e+02 3.0 0.3 2 23 1004 1026 1003 1026 0.95 8 14 0.0035 0.16 12.1 1.8 1 23 1040 1063 1040 1063 0.94 9 14 1.8 83 3.6 0.6 1 21 1353 1373 1353 1374 0.93 10 14 0.00065 0.03 14.4 2.2 1 23 1391 1413 1391 1413 0.99 11 14 0.024 1.1 9.5 0.1 1 23 1418 1441 1418 1441 0.96 12 14 0.0019 0.087 13.0 3.5 1 23 1447 1470 1447 1470 0.96 13 14 0.0017 0.079 13.1 3.0 3 23 1477 1499 1475 1499 0.94 14 14 0.00061 0.028 14.5 1.8 1 23 1506 1529 1506 1529 0.95
Sequence Information
- Coding Sequence
- ATGGGTGATAAGAACGGTATACAGGACTATTATTCATCGGTTTGTCGAACCTGTCTGTCAAGCAGTGGGGATTTGCTCAATTTGACCGCGCTTATTAATGATAATGTGCGCCATAATGATGACGAAATCTCCTATATGGACTGCTTAAGGTATTGCCTGCCTGACGGCTATAATGCTGAGACGGAGGACGCGACATTGCCCCATAAAATTTGCATAGACTGTGCTTCAGCCTTACAAGTGGCTTATTGGTTTATGAAGAATGCTAGCAAAGCACAGGAGGTGTTGAGAGTTCGTATTCGAGAATTGCAAGATAAACAAAATCAACTGGACAGACAGGCGGCAGCTGCAGAGGAAAGCAAAAAGCCCAAAAGGTATCGCTGTAAAATATGTAACACTAAGTTGGAGACCAAAAGGTCTTTAAAAGACCACGTCAAGCTACATTTAGatATTATTGCCTATATGTGCCAATTATGCACATTTGAGCACCACCAACGTAACCATCTAATTGAGCATTATCAGCTGGTGCACGGTGTGGAAGCCACTGTTGAGCAATTGAAGCCTAAGACAAAAACCTCACTTTCAAGCAAAGGTGCTACTTCGACAACAACAATCCGGCAATATGATAACAGAATAGAGGAGCAGCAACAAACAAAAGAGTTACAACAGCAAGCATGTCAAGTTTATATGGAGGCACCTTCAACTCTAAACTCACATGAAATTCTATATTCAAATGCTTTAAATCAGCAGCAAAATAGTCAAAACTTTTTGTACACTACGACTGGTGACTCCATAAATGCAACTGCTGTTGCCAACCCTCTCAATGAGAATCTAAacccaataacaacaacaactatatttGCTCCTACCAACACAGATAATTTCGAATTTAATGCTTTCGAAGGAGGCGAACTGAATGTACAAAACAATCCAAATGACAATGAATTTATCGTCATGACAGGGGGTACAATGGAGAATGTTATGGGCAAAGgtGTTGTCATCGAGTATTTTAATACTGGAGAAGATGGTACTATATCTCTGGAAAATGGTTTAGTTTTGGATAATGCCATATTACAGGTTCAAAACCCTCAACCGGATAACACCAACATGTTATTGGGACAAAACGAAGTGGTACAAATGGATGTGGACGATTTAATAGTAGAAGATCCAGAAAATACACCAGAACAAACTCAAGATGCACCGCTTTCTCCCATCGATGAAGACATGATACCTGCATCATTTATTGAGCAACCAAAAAGAATcaattgcaaaatttgtgccaaagaATTCGATACACAACTGGAGCTTAAAAATCACATGTTGACACATAATGaaatACCCCATTTCTTTTGTGAGAACTGTAGTTTctatacatttttcaaaattgatttGCATCAACACTACAAAAGTAAGCACGGCATTCAACCTACAAATAGGCAATTGCAACCGAAGAATAAACAAACAAGAGCTTCGGAAGTTGACATGGATCCACAGACAAAGAAAGCAGTGGTACAAAAAATTGAGAGATACGCAAGATCGCCGAGATTGGTGTACAGTTGTGATATATGCTTCTATGAATGTGATttgaaatatgaaattcgtaggcATTATCTGAGCAAGCATAGGATGCAATTGCAAGATTTCCAGCAGAGACCTACCCGAAGCAGCCTCACAGCTGCCATACAACCCATTTCATTTACAAACATTGTGGAATCCTCACCACCTGCACCACCCGCAGCACCTGCAACGCCAAAAGAGAATGCtaccaataacaacaaaattgttaaaataagAGTCAACTCTgtcaataaaaatgcaaaagcgGTTGAAGCTGTGAATCCTTCTGCCATGGAAGAGCCACAATTGCCGGATTATATAAATGGTCTAAACTGTCGAAAGTGTAACGAGGTCTTCTTCTATCGCAATAAACTGTATGAGCATTATAAGTTACACACAGCTGCGGAGGAGGCATTGCGGCAACAGAAAAAGGCTGCAAAGAAACAGACAGGTAAAAGTTTGCCGAACTCACAAATTCAACAGACAACACCGTTGGTAGAATCTACGTTGGGCTATCAGCAGCAGGAAACGGAAGCAACTCAACTACATCTGCAACAACAAACGGATGTTAATTTACAATTACAACAACAGGATAACACATTAGTACTACAACAACAGTCATTGCAAACTGAAGCCCCATTACAAATCCCCCAACAAGAAGCTGCGCTACAAATGTCTGAACCACAGAACATCCAAATGCAATTACCAGAGGAAACACAAATTCCCCCCGAGTTGCAAATGCAATACAATCAAGATTCCCAAACACATCAAACGCACCTTCAGGTATTGCCGCAATTGCCTCAGCCACACCAAGAAGTGGTTATAACTACAACACCTTTGGACAATGCCATACAGACGACATTCAACAATGTCGATGCCATGTCATTGGTTCTAACATCCAACACAAACACCATGAGTAATAATCCTGCGGCACCATTAACCCCCTCCTCCAGTTCGACCTACACATTGCCCTCAGATGCCATACCACAAATTGTGGAAATGGAGCAAACCATTGAGACCGATATGGATTTTGATTTTAATGGCGATGCATTATTTGAAGATTTTGATGATGTCGATGTGGAAAATGAATCGGATGATAATGACCTGCGTAACATTGTGCTGACCTCCGATGATGATTTCGATGATATGcttaaggaacagggagaaACACAAATTCAGACCACCACTTCGTATTGTGCTCAGtgtcagaaaacatttttgagcCAATACCAATTTGAGAATCATATGTTTTTGCACAGAGgGCTGGCTCCTTATCGTTGCGAAATGTGTACGAATCTCTATAATACCAAACGTGCTTTAATACGTCACTACAGTGCTGTACATAAAAAAACACCCTCCCGCGATATGATCCAGGCAAAAGGAGATAAAGTGTGTGTCTATGACAAATCTTCGACGGAGTATACGAACATAGAAGAATCACAGGCCATAACACTGATGTGTGCTAAGTGTACCTATGAATCAACAGACTTTCCCAGTGTGCAATTGCATCTAAACACCAATCATAGTATTCATGATGATTCATATATACTTAGAAaACTTTCCTTCGAATGCCCACGCTGTATTCGATCATTTTCAACCAAAGCAAAACTTCTGCGACATTTGGAGCATAATCATTCATTGACACccataaatgaaacaaaatctCAAACAAATTCCACAGATATTCCCGCCtcgacaacagcaacaacggcGAATACAAATGACGCCCCAGCACCTCCATCCGCACCCACATTAATTGTAGATAGTGTAAATATGTTACAAATGAACGCCACAAGCGAACTAAGCTTAGAACCGGAAAAGGAAACTAACAATGAACAGCTGGTGGCAACGCAACTTGTAGATATACAACCAGCAACTGCCGAAATTCAAATAATTGATACCCAAGCTCTTAATATTCAACCAAATCCAAGGGCTGAAGAAACCCCACTGGTAGCAGCTCCATATATCGATGTACAAACAGAGAAAGCAAATGCCCAAACTGAGCTAGGAAATGGCGAAAACAATATAGCGGTCTCTCTTTCGCCTTTTGTTACACTTGCGGTCTCCCTCTCGTCCCTAAGCCAAAAACCTGATTTGTATGTGAGCTCTGTAAAGCAACCTGATCAGTTCGTGCAAACACAATTTATGGAGATCCCATCAGGAACCCCAACTCTTGGTAACCAAATAGAGGCAGCTGAAAGCCCAGCTATGACAGAAGAACTTCAAAATGACAGCAAAACTATAAACGAAAATCACGAAAATGACGAAAGTCAAATGGGCGTCTCCCTCTCGCCCTTTGACATGACCTGTTCTATTTTGCCTAATGATTTTTCCCTTAACGAACCTGCCGAAGACCCAAAGGATAAATCATGTGACGCTGACATTGCTTACTATACTAATACGGACCCCAAGACTCCAGATCTATCCAAAACTGAGGCAGACTCGTCGTACTCCTCAGATCCCCAGTCTTCGACTAACCCCATCAAAACCAATTTAATTCTCTACAAATGCAAAGTATGTGAAGGTGAATGCACCAGCATAGAACAAGTCCGACTACACACCAGAAATGCCGAATGTCGGGAGCTAGtcaaaatatcgaaaaaagaCAATCCGCTCTTCAAATGTGAAGTTTGTGAAGCCAAGTATCCCAACACCTATCTATTGAGACATCACCTAAGACGCCATATTGAGCGGAAATATCCTTGTTCGTATTGTCCCAAGTcttatttaagcaaaatcgaggTGGATGTCCATCAACGAATGGCTCACTCTGCGGAACGGCCATATAAGTGTGACAAATGTCCCAATAGCTTTCGTTTAATGCATCACTTGAGACGGCACCTGGATATCATACACTTTGGCAAACGTCATTTGTGTCCCGAGTTGAAGTGCAATAAGCAGTTCAGTACCCTGAGCGAGATGAAAAAGCACAAGCAGTCTCATTACGGAGCTATTGAGCCATATAAATGCAAGTACTGCCCGAGTGTGTTTAAAAGGCGTCTCTTATTACGCAAACACTTCTCAATTGTTCACAAGAAAAATCTTAGCGACGAAGAAACCTCCTCCAGTCGCAacataaataaagaaaagtCTCACGTAAGATTTGGCATGAGGCGTCTACGTAGTCGAGAGTAA
- Protein Sequence
- MGDKNGIQDYYSSVCRTCLSSSGDLLNLTALINDNVRHNDDEISYMDCLRYCLPDGYNAETEDATLPHKICIDCASALQVAYWFMKNASKAQEVLRVRIRELQDKQNQLDRQAAAAEESKKPKRYRCKICNTKLETKRSLKDHVKLHLDIIAYMCQLCTFEHHQRNHLIEHYQLVHGVEATVEQLKPKTKTSLSSKGATSTTTIRQYDNRIEEQQQTKELQQQACQVYMEAPSTLNSHEILYSNALNQQQNSQNFLYTTTGDSINATAVANPLNENLNPITTTTIFAPTNTDNFEFNAFEGGELNVQNNPNDNEFIVMTGGTMENVMGKGVVIEYFNTGEDGTISLENGLVLDNAILQVQNPQPDNTNMLLGQNEVVQMDVDDLIVEDPENTPEQTQDAPLSPIDEDMIPASFIEQPKRINCKICAKEFDTQLELKNHMLTHNEIPHFFCENCSFYTFFKIDLHQHYKSKHGIQPTNRQLQPKNKQTRASEVDMDPQTKKAVVQKIERYARSPRLVYSCDICFYECDLKYEIRRHYLSKHRMQLQDFQQRPTRSSLTAAIQPISFTNIVESSPPAPPAAPATPKENATNNNKIVKIRVNSVNKNAKAVEAVNPSAMEEPQLPDYINGLNCRKCNEVFFYRNKLYEHYKLHTAAEEALRQQKKAAKKQTGKSLPNSQIQQTTPLVESTLGYQQQETEATQLHLQQQTDVNLQLQQQDNTLVLQQQSLQTEAPLQIPQQEAALQMSEPQNIQMQLPEETQIPPELQMQYNQDSQTHQTHLQVLPQLPQPHQEVVITTTPLDNAIQTTFNNVDAMSLVLTSNTNTMSNNPAAPLTPSSSSTYTLPSDAIPQIVEMEQTIETDMDFDFNGDALFEDFDDVDVENESDDNDLRNIVLTSDDDFDDMLKEQGETQIQTTTSYCAQCQKTFLSQYQFENHMFLHRGLAPYRCEMCTNLYNTKRALIRHYSAVHKKTPSRDMIQAKGDKVCVYDKSSTEYTNIEESQAITLMCAKCTYESTDFPSVQLHLNTNHSIHDDSYILRKLSFECPRCIRSFSTKAKLLRHLEHNHSLTPINETKSQTNSTDIPASTTATTANTNDAPAPPSAPTLIVDSVNMLQMNATSELSLEPEKETNNEQLVATQLVDIQPATAEIQIIDTQALNIQPNPRAEETPLVAAPYIDVQTEKANAQTELGNGENNIAVSLSPFVTLAVSLSSLSQKPDLYVSSVKQPDQFVQTQFMEIPSGTPTLGNQIEAAESPAMTEELQNDSKTINENHENDESQMGVSLSPFDMTCSILPNDFSLNEPAEDPKDKSCDADIAYYTNTDPKTPDLSKTEADSSYSSDPQSSTNPIKTNLILYKCKVCEGECTSIEQVRLHTRNAECRELVKISKKDNPLFKCEVCEAKYPNTYLLRHHLRRHIERKYPCSYCPKSYLSKIEVDVHQRMAHSAERPYKCDKCPNSFRLMHHLRRHLDIIHFGKRHLCPELKCNKQFSTLSEMKKHKQSHYGAIEPYKCKYCPSVFKRRLLLRKHFSIVHKKNLSDEETSSSRNINKEKSHVRFGMRRLRSRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -