Basic Information

Gene Symbol
-
Assembly
GCA_001015335.1
Location
NW:561744-591438[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 5 2.3e+02 2.2 0.0 3 23 256 277 254 277 0.93
2 15 0.0027 0.12 12.5 0.3 1 23 353 375 353 375 0.98
3 15 0.00031 0.014 15.4 3.6 1 23 380 402 380 402 0.98
4 15 0.081 3.7 7.8 3.9 1 22 408 429 408 432 0.91
5 15 0.059 2.7 8.3 0.3 2 23 538 560 537 560 0.93
6 15 0.00066 0.03 14.4 7.6 1 19 634 652 634 657 0.90
7 15 0.0076 0.35 11.1 2.1 1 23 664 686 664 686 0.97
8 15 0.0091 0.42 10.8 0.5 1 23 692 715 692 715 0.96
9 15 0.31 14 6.0 0.1 2 23 755 777 754 777 0.95
10 15 0.0011 0.052 13.7 5.7 1 23 2313 2336 2313 2336 0.98
11 15 0.027 1.3 9.3 2.3 1 21 2345 2365 2345 2366 0.95
12 15 0.0068 0.31 11.2 6.1 1 23 2379 2402 2379 2402 0.96
13 15 4.9e-05 0.0023 17.9 0.8 2 23 2412 2433 2411 2433 0.97
14 15 0.015 0.71 10.1 4.0 2 23 2440 2461 2440 2462 0.95
15 15 1.5e-05 0.00067 19.6 1.1 1 23 2556 2578 2556 2578 0.98

Sequence Information

Coding Sequence
ATGTTGGACCATGAATCAATTTGCTGTCGCTTGTGCATAAATATTTGTTGTCAACCTCATAGTCTTTATGATGAGGCTGGCCAAGCCAATGAGATCCATAGACTAATGAGCAAATATTTCACCAACACAATGTTGAATATGGAATGGGAGCAACGTTTGACCTACATCTGTGAGGAGTGCTGGCGTCATATCTATGAATTTCATAACTTCCAAGAGGCCATAATAAAAGCACAAATTGTTCAGGTGCAAGTAAAGGTGGAGAtggaaaaagaagaagagagCAGAGAGTTATCCCAGCTCTCTGTGAATGTTAAACCGCAAGTTGAGATAAAGCAGATTGAAAATCAACTACAGCAGTATCTAGAGAAACCAATTCAAGACAACTGCAAGGACTTTGGCTTCGTCAAACAAACTCCTCAGTTCTCTGAAAAAAGAGAACTATCCAATTCTTATGATAGTTCATCCATGATTTCCCATCCCATTAAATTAGAACCACCTCTGGATCTTGACCATGACTATGTAGAATATGAGCAAGAAGCCTGCTCTGACATGGAAGTAACTGCAAATGTTTATGATGAAGCGGCAATGCCCACGGTATCCAGGACTGCAATTTCTTATcaagaaaatgaagaagaaaacTCCAACTTTAGTTTCGATGATGAACAGCCCTTATCTTCAAGAACTCGAAAGAAACCTTCAAAGTTTAAACATCGTACCTTGGGGCAGTTTGATCAGCTGATAGCCCAATGGAGAACCAATTTGGATTGTGTGATCTGTCTTCAAGTATTACCCAGCTATTCTTTGCTACTGCAACATTTCAATGTGCTTCATCCCGAGCAAGACTGCCATCTACTATGCTGCCAGTTGAAACTTACAACTCTATATGAAATAGAACGGCATATACGCTATCATCAGGCCCCACCTCATCTTAGATGTGATGCTTGTTGTATGGCTTTCATACAAGAGAAATTGTTCAAGGCCCATGTGCTGAAGGTACATGAAGGCTGCAAGACCAAGAAAAAGCAGGCAAGCGACAGCGTAACAGTAAAAAAGAAATATGAATGCAACGAGTGTGAGAGGTCTTATGAAAGCGAGCTAAAACTGAAACTCCATGCGCGAGTTCATGTAcctaaaaaattcaaatgcacCTTGTGCACCAAGTCCTTTGGACGTCATTCGGAATTTCTGGAACATATGGAAAGGCATAAGGGAGACAAAAAATATGTGTGCTCGTATTGTTCGGAGGCATTTACCTGCAAGCGTTATCTATTGAGGCATATAAAGAATTATCGCCATGAGCCAAAGGCTAAGGTTCCAGTGCCAGAAGCTGGAATTAAAAacgttttgaataaaaaaactgAAGCTGAAGTAGGATGTTTAGATAAGAAGCCAATAGCAGTGCCAACCACAGAGACAGAAGATTCAATCAAgtttgaatctgatatcttgaCACAAAATTATGAAACCCTTAATCTGGATATAACTAAAGAACAATCAGCATCCAACTCCACGGCAGAAGATGACTTATCATTACAGTTAGGAAAACCTAATGAAGAAGCCCTTACCCAACAGGATTCCGATGCCTTGATAGCTCAATGGAAACCCAATTTGGAATGTCCTCTATGCCAGGAAATACTTTCCAGTTTTTCCCTACTCAACAAACATTTCCAATTGCAGCATCCTTTTGAAAAATCTCATATTCTATGCTGTCAGCGTCCGTTATATCGCCCCAAAGATATTGAATATCACATTGAATATCACAAGGCCCCCAAGGATTTGAAATGTGACCTTTGTTGCACATATTATCGCAACAGATTACGCATATATCAACATAATTATTATCAGCATACCACAACAGACAAAGGTTCTCCTCAGCCTAAAGCCACCGAAGATAGGCCCCATGAATGTCCCCACTGTCAAAAGACTTACAAATCTAAAAGCAATCTCAAAAAGCACTGTCAATTGCTACACAATAAGGAAACTTTGAAGCATACTTGCCCCATATGCCACAAGGCCTACCTCTATGAATCTCAGCTGCGCTATCATATGGTCATTCATAGCCGTGAAAATGAACATATTTGTGATTTTTGTTCAGAATCATTTCCTTATTATTATGGCCTATTGGCGCATTTGCAAAGGGCCCATTACTCACAGTGGAAAGAAATGCAGCAAAGACAAGAGAAAATGCCAATTAGTAAAAATAAAGTCCTGCTTAGAGAGAAAAAACAAGTGCAAAAAGAAAAGGAACTTTTGGGAGAACTCTCCTGCACTCTATGCCTAATGGAATTTGCAACTTTAAGAGATTTAAGTGAACATGTTGCCACAGTACATTCCCAGGAACAACTGGTGAAGGGCTTAACTAAAGAAGAGAAGGAAGATGACCAAAGAAGTGAAATTTATGAATTAGCTGCAAAATATTTTACCACCGAATTGCTGGAAATGGAATGGCTGAGACATCTTAAAAATATATGCTTGGAATGTTGGAGGCACTTAGTGGATTTTCAAAGCTTTCAACAATCGGTGATATTGGCTCAGAAATTGGCACTTTGTAATATACCTGCAGAGAATAGAAAGAATAAGCCAAAGTTGTTGGCAATCACAATAACAAATGATACTGTTGTCTTGAGCACTCCTTCGGATCCTTCATTGAGTAATGTGGCACAAAATGAATTATCACATTTAAGCTCTTCACAATCTACAGGAAATTTTGGTATGGATAATGATTTTCAGACCAGGATTGTTGTGCCTTCTGCTTCTGCCATCACAAACTCTGTTCACGATTCTGACATTTTGGTTGAGGAAAATTTGACTGAAAACTCCCGCAAAAGCTCTTCACAAACTATAGGAAATGTTAAGGCGCTTGAAAAAGATTATAATGATGCCCGTGATTCTGCCATCGCTAGTTTTCTTCAAGCTTCTGATATGTTGCATAAGGAAAATACCCTACTGAATACAGTACAAAACTCTATAATTTCCTCAGAATCCGTTAGAAATATTGAATCTACAATAGATGATCTTAACAATGACCGACATCACCTTGTAAAAGAAGTTACCCCTGCTGCTGCTATCACAAGTTCTATTCAAAATACCTTAGTTACAATGTTGGTTAAAGAAAACTCTGCACTAGAAGAACAATTGCGCTCGAGTTCTTCACAATTAATAAGAAATACTAACTCAAATGAAGAAACTTCTAATGATATCGTAATTCTAAATGCGAATGATATCCAACCAAACAGAAATACTATATACCTAGTCAGTAACGCAGATTGTAATAGCCCAGTTCAGGAAATAATGTTAGGGTCAGAAAGTCAGCATAAACAGACCAGTAATTCTTGTGTGGGTATGAAAAGTGCTTCAGCCCTAGACAGTAGCCAAGCAGCTGATTCTAATAGGCTAAGGACAGAAGAATTAACTGATTCATCACAGCCCCAAGTTGAAATGAATGAGAGTGTGTTATTAACACTTTCATCTACTGTATTCTCCATAGATGACAGTTCTTCAAGCCAAGATTATGATATTTTTGAAGAGGTTACAAGTCATAGAGAAAAAGAAGCGAATCCAAATTCCAGCATAATAGAGACGCCAGAAGAAAAGCCCACTGGGCCAACTGAGACCCATGCTTTTCTCAATGATAGCTTCTCAACTATTTCATCTTCAATATTTTCTATGGAAGACAACTCTTTAAGTGAAGAAGACATTGTAGAAATTACTAATCTACCACATTTAGTACCTGATATAGTTTGCAAAGCTGAAAAGCTAGTTATGCCAAACAGTTCCATTGTGCTAAGTGATGCAATTTCGGAGAGCTCTGAGGAAGATGGGGAAGTTTTAAGCGAAACCGATGATGAAGTCGTGGGTATATTTTCCTGTCTTGATAATTCGTGGAAAAGGGGACACAGCTACACCTCTAGCTGTTTAAATCTAGAAAGAAACTGGAAAACCTTACAAAACATAGAAAAAGAATGGCAGCAGCTCGATGATCCTTTTGGAAGtttatttcagaaaaatgtttcaCAAGATGCAAAGTATTCAGAGGAATATTCTAAAGCAAAAGGATTGGAAGTTGTTAATTTATCTAAAGCGAAAAAAATTGATGTAAGAAAGAAATCCCCAGAAACTCCAATTGTAGATGTAGAGAGTCAATTCCAACCTTCGAGATATAATAAAACCTATTATCGGCGTAGTGTGAAAGCCAAAATATCTTCTTCTTACAGAGATTTAAATGATAAATCTTCTTCCAATGTTTGCCCTGAATCTTCCATAGCTTTGGCCTTTGAACATTTCTTGACAATTCCCGACTTTCTGCAACAACAAGCTGAGAGTGATAATTATGTAATACCTAAGGCATCCTTACCCATATTAGCCACTAGTGTAGCTACTACAgcaaaagaaaataagaaagtAAAAAAGTACTTGGCTACCCAAGTACAAGCCAAAAAGCCACAAATTCTAGCAATAAACCGTAATAGATATCAGAAAACCTATTCCGCACGTAGTTTGAATACCAAGAGTTCTTTAAAAGATTCAAGTGACAAAACTTCTTCAAATATATTTTCCCATCTCATCATAACTAAAAAAATGTTCCAAGCGATCTGCTGTCGTCTTTGCATAAATATCTGTAGCGATCATAAAAGTCTCTACAATGAAGATGGCCAAACAAATGAATCTTATAAACTTGCTGCAAAATATTTCTCACCAGAGtTTCTGGATGTGGAATGGGTCAAACATCTTAGAAATATATGTCTAAAATGCTGGAATCATATAGCAGAGTTTCATGAATTTCAACAATCGGTAATATTGGCTCAGAAAATTGCAGTATTCAATAAGCTTACGGAAACTGCTGATAAATTAAAGGTGGTTACAGATAATCTGAGTAGTACTTCGAGAATATGCCAGAGTGGGGAATGGCTTAGTTCGATGATTGTGAATAAAGCAAACAATAAGGAAGATTTAAATACTTTACAAGAGTATGAAGCTGAAGAATATTTAATATATGACGATGAAGCTGAATTTTCAGAAGAACAACGTATGGAAATTAAGAATTCAGCTGCAAGTAGTGAGTTGCAGCAAACTTCTCAAGTAAACTTCCGACTTGAGGAAACCTCCAAATCAGCACGATCTTTGACTCTAGTTGATCCTAAAGGGAAACAATTTTCATATGCGGATAATAATAGAAAAGCTTTAAGTATTGATAAATCAATGCCTAAAAGCTGCACCAAGGTATCCACAAATGATTCTGGCAAACAAGTCCACTTTACTTTGCTCAAAGACTCTGACCAGAAACTTGATTTATATGTGGAGAGTGAAAATGAACCCATGGAAGTCATAGTGCTGGAAGATTTTCCCAAGAAAATTTCGGATCATCCAGAATTATCTGCTAATAGCACGGATTCTCAGGATGAAGATCTTGTCTCTATATATGACTATGAGTCATCCAAGAGTGAAGAAGATTGTGACCAAATCATTGAGCTTGGCTCGCCCGAACCACCAAgcccgaaaaaaaaatttaattttttggattttcttaAGCTTGAAGCCTTAAGTGATTTGGATGATGACATCCTTGAAGATTTGGCAACTGAAAATGACATTACAAGAGATCAAGAAGTGGCTACGCAAAGCAATCCTAATTTATGGAAAACTTCAGCAAGAAGTTTTGAAAGTCCTGGAAATTCCATTAATGTTAATAAGGAATATCACCAGTCCGACATATCAACAGGACATACCGTAAAGCATAAAACTCAATCAAATTCTTTTTCGtcatttgaaaaagaaaatcaaaaggaTAAGAAGAGTAGGCCTAAAGTTATATCACAGCTATCAGCATTGCCTGGGACTTCTAGTGCTAAAAGAACTGTAGCCACCAAAATTATATCTTATATGGAGGCACCCAGTCCCGAAGAGATTGCAAGTGAACCTTGTAAACAATCTACCCAACAAATGGTTTCCAAATCACCCATGAAAGAGGAAAGTTTAGCCACTATGATTGCATTGTCTTCACAAAATGAGATTTCCCAAGAACCGGAAACCATATCAATTAAGCTCGAAGAGGAGGAAAGCTTTAACCTTTCCGACGCTGAAGTTATAATGTTGGAAAATGATTTGATAAGACAAATTCAAATAGCCAAATCTACCAgtaaacaaaatttggaaagCAGAAATGTAACAGTTCCTACGACAGCTAGCAATCAGCAGAAGGGTAATTTGTTAATGCTTACTGATTCCTCAAAACCACTTAGGACAGAAGTCCTTCCGAATGCTGCAAAACAACAACCCTTAATTATGGAAGAAGGAGCAGAAAACATGGCAACCAAATACTCATCCTCAAACCTTAAAACTTTTGAAAGAAGATTGAAACAAATCAAGACCGTGTCTTATTCGAAAACAAATTGGATTGAAACTACAAGCATTGCCAATAAATCATTTTTAGATGGGGAGCAAGAAGagtcaaattcaaatttcaatcaGCCCCCAGAGCAAGATGAACTATTGATGGAAAGGGAATATATATCGGATGACAGCAACAACTCTAATGGTCTACTCCAAACAGATCATCAGACAGATAATAGTGATTGGGAAGACTTTAATGAAAATCAAAGttcagatgatgatgatgatgattggcAAGAGTCGCCTGATCGCAAAACAACTCAAAGAAAGCAAGTAGCTCGAAAAACCATATCTTATAAAAGAATAACAGAATTTGGGCCTCCCAAAACCATTGATGATTATGACCAACTTATAGCCGACTGGAGGCCACATCTGCAATGTGTCCTTTGTCCAGAAATGAAAACCAAATTCTCTCTATTGCTGCAACATTTTAAGGAGAAACATCCTACGAAGAAATGTTACATACTTTGTTGTCAGCATAAATTGTTCTATCGCTACGAAATTGCCAGACACATTCAATATCACAATGATCATAGCTTGTATACATATAAATGTGAACTATGTTACCGTAGTTTCAGAAAGAATTGTTACCTTAGAGACCACATGAAGGTGAAACATTCGGTTAAACCTCCAACTTCGAAATTTAATTGTCATAAATGTGATGCCTCTTTTATTGAGAAATGTGGTTTGGTCAGACATTTAAAGTATTCCTGTGATAATGGCCAAAGAAACAAGGAACGTACTCACCATTGCAAAATATGTGGCAAATCCTATAAACTTCGCAGTACTTTGGACAACCACCACAAAGTTGTTCATTTGGGTTTAAAGAAACCTCCAGAGATTAAATGCCAAATTTGTGATAAGacttttatagctgccatgcattTGCGGGAGCACATGAACAGTCACACCAAGGAACGCACTGCGGTGTGTCAGCATTGCCCCAAGACATATTTGTATTACACGGATTTGATTCGTCACATGAAAAAGCATCATTTTACAGAGTGGTTGGAGAAAGCCAGGATAAGAATGGAGTATCGCAGAAATAGAAAAAGAGTCTATAAGAAAAAGAGCAGCAGTAGGCAAGAAAAATCCGATGAAGAGGaaaataagaaacaagtaagcaGTCAACAGGAAAGCAAGGAACAGGAAAACAGTAGAAGTGAAAGCCAGGAACAGGAAAACCAGAGCATGGAACAGGAAGGCAGGGAAGAAGGTAGCCAGCAACAAGAAAGTATAGAATCTCTATCCTTAGAGAAAGCAGATCAAGGGGTTTTCCCTTGCGATATTTGTTCCAGATCGTTTAAATATAGCGCTTATTTAACCGCTCATAAAAGAAGACATTTCAAAGCCGTAAAAGATTCTAGCCAAGATTGA
Protein Sequence
MLDHESICCRLCINICCQPHSLYDEAGQANEIHRLMSKYFTNTMLNMEWEQRLTYICEECWRHIYEFHNFQEAIIKAQIVQVQVKVEMEKEEESRELSQLSVNVKPQVEIKQIENQLQQYLEKPIQDNCKDFGFVKQTPQFSEKRELSNSYDSSSMISHPIKLEPPLDLDHDYVEYEQEACSDMEVTANVYDEAAMPTVSRTAISYQENEEENSNFSFDDEQPLSSRTRKKPSKFKHRTLGQFDQLIAQWRTNLDCVICLQVLPSYSLLLQHFNVLHPEQDCHLLCCQLKLTTLYEIERHIRYHQAPPHLRCDACCMAFIQEKLFKAHVLKVHEGCKTKKKQASDSVTVKKKYECNECERSYESELKLKLHARVHVPKKFKCTLCTKSFGRHSEFLEHMERHKGDKKYVCSYCSEAFTCKRYLLRHIKNYRHEPKAKVPVPEAGIKNVLNKKTEAEVGCLDKKPIAVPTTETEDSIKFESDILTQNYETLNLDITKEQSASNSTAEDDLSLQLGKPNEEALTQQDSDALIAQWKPNLECPLCQEILSSFSLLNKHFQLQHPFEKSHILCCQRPLYRPKDIEYHIEYHKAPKDLKCDLCCTYYRNRLRIYQHNYYQHTTTDKGSPQPKATEDRPHECPHCQKTYKSKSNLKKHCQLLHNKETLKHTCPICHKAYLYESQLRYHMVIHSRENEHICDFCSESFPYYYGLLAHLQRAHYSQWKEMQQRQEKMPISKNKVLLREKKQVQKEKELLGELSCTLCLMEFATLRDLSEHVATVHSQEQLVKGLTKEEKEDDQRSEIYELAAKYFTTELLEMEWLRHLKNICLECWRHLVDFQSFQQSVILAQKLALCNIPAENRKNKPKLLAITITNDTVVLSTPSDPSLSNVAQNELSHLSSSQSTGNFGMDNDFQTRIVVPSASAITNSVHDSDILVEENLTENSRKSSSQTIGNVKALEKDYNDARDSAIASFLQASDMLHKENTLLNTVQNSIISSESVRNIESTIDDLNNDRHHLVKEVTPAAAITSSIQNTLVTMLVKENSALEEQLRSSSSQLIRNTNSNEETSNDIVILNANDIQPNRNTIYLVSNADCNSPVQEIMLGSESQHKQTSNSCVGMKSASALDSSQAADSNRLRTEELTDSSQPQVEMNESVLLTLSSTVFSIDDSSSSQDYDIFEEVTSHREKEANPNSSIIETPEEKPTGPTETHAFLNDSFSTISSSIFSMEDNSLSEEDIVEITNLPHLVPDIVCKAEKLVMPNSSIVLSDAISESSEEDGEVLSETDDEVVGIFSCLDNSWKRGHSYTSSCLNLERNWKTLQNIEKEWQQLDDPFGSLFQKNVSQDAKYSEEYSKAKGLEVVNLSKAKKIDVRKKSPETPIVDVESQFQPSRYNKTYYRRSVKAKISSSYRDLNDKSSSNVCPESSIALAFEHFLTIPDFLQQQAESDNYVIPKASLPILATSVATTAKENKKVKKYLATQVQAKKPQILAINRNRYQKTYSARSLNTKSSLKDSSDKTSSNIFSHLIITKKMFQAICCRLCINICSDHKSLYNEDGQTNESYKLAAKYFSPEFLDVEWVKHLRNICLKCWNHIAEFHEFQQSVILAQKIAVFNKLTETADKLKVVTDNLSSTSRICQSGEWLSSMIVNKANNKEDLNTLQEYEAEEYLIYDDEAEFSEEQRMEIKNSAASSELQQTSQVNFRLEETSKSARSLTLVDPKGKQFSYADNNRKALSIDKSMPKSCTKVSTNDSGKQVHFTLLKDSDQKLDLYVESENEPMEVIVLEDFPKKISDHPELSANSTDSQDEDLVSIYDYESSKSEEDCDQIIELGSPEPPSPKKKFNFLDFLKLEALSDLDDDILEDLATENDITRDQEVATQSNPNLWKTSARSFESPGNSINVNKEYHQSDISTGHTVKHKTQSNSFSSFEKENQKDKKSRPKVISQLSALPGTSSAKRTVATKIISYMEAPSPEEIASEPCKQSTQQMVSKSPMKEESLATMIALSSQNEISQEPETISIKLEEEESFNLSDAEVIMLENDLIRQIQIAKSTSKQNLESRNVTVPTTASNQQKGNLLMLTDSSKPLRTEVLPNAAKQQPLIMEEGAENMATKYSSSNLKTFERRLKQIKTVSYSKTNWIETTSIANKSFLDGEQEESNSNFNQPPEQDELLMEREYISDDSNNSNGLLQTDHQTDNSDWEDFNENQSSDDDDDDWQESPDRKTTQRKQVARKTISYKRITEFGPPKTIDDYDQLIADWRPHLQCVLCPEMKTKFSLLLQHFKEKHPTKKCYILCCQHKLFYRYEIARHIQYHNDHSLYTYKCELCYRSFRKNCYLRDHMKVKHSVKPPTSKFNCHKCDASFIEKCGLVRHLKYSCDNGQRNKERTHHCKICGKSYKLRSTLDNHHKVVHLGLKKPPEIKCQICDKTFIAAMHLREHMNSHTKERTAVCQHCPKTYLYYTDLIRHMKKHHFTEWLEKARIRMEYRRNRKRVYKKKSSSRQEKSDEEENKKQVSSQQESKEQENSRSESQEQENQSMEQEGREEGSQQQESIESLSLEKADQGVFPCDICSRSFKYSAYLTAHKRRHFKAVKDSSQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-