Basic Information

Insect: Stomoxys calcitrans
Gene Symbol: -
Assembly: GCA_001015335.1
Location: NW:593098-597707[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.025 1.1 9.4 1.1 2 23 248 270 247 270 0.96

2 14 0.53 25 5.2 2.7 2 23 304 326 303 326 0.95

3 14 4.3e-06 0.0002 21.3 1.8 1 23 345 367 345 367 0.97

4 14 3.2e-05 0.0015 18.6 0.1 2 23 373 394 372 394 0.95

5 14 5.3e-05 0.0024 17.8 1.9 1 23 400 423 400 423 0.95

6 14 0.79 37 4.7 3.6 1 22 454 475 454 475 0.95

7 14 0.37 17 5.8 4.8 1 23 554 577 554 577 0.98

8 14 0.0025 0.11 12.6 1.9 1 23 627 650 627 650 0.97

9 14 0.00073 0.034 14.3 1.0 1 23 697 720 697 720 0.97

10 14 0.0014 0.063 13.4 0.5 1 23 748 771 748 771 0.98

11 14 0.00013 0.0061 16.6 1.1 1 23 810 833 810 833 0.98

12 14 0.14 6.4 7.1 3.6 1 23 859 882 859 882 0.97

13 14 0.0013 0.059 13.5 2.6 1 23 909 932 909 932 0.98

14 14 0.04 1.8 8.8 2.1 1 23 957 980 957 980 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.025	1.1	9.4	1.1	2	23	248	270	247	270	0.96
2	14	0.53	25	5.2	2.7	2	23	304	326	303	326	0.95
3	14	4.3e-06	0.0002	21.3	1.8	1	23	345	367	345	367	0.97
4	14	3.2e-05	0.0015	18.6	0.1	2	23	373	394	372	394	0.95
5	14	5.3e-05	0.0024	17.8	1.9	1	23	400	423	400	423	0.95
6	14	0.79	37	4.7	3.6	1	22	454	475	454	475	0.95
7	14	0.37	17	5.8	4.8	1	23	554	577	554	577	0.98
8	14	0.0025	0.11	12.6	1.9	1	23	627	650	627	650	0.97
9	14	0.00073	0.034	14.3	1.0	1	23	697	720	697	720	0.97
10	14	0.0014	0.063	13.4	0.5	1	23	748	771	748	771	0.98
11	14	0.00013	0.0061	16.6	1.1	1	23	810	833	810	833	0.98
12	14	0.14	6.4	7.1	3.6	1	23	859	882	859	882	0.97
13	14	0.0013	0.059	13.5	2.6	1	23	909	932	909	932	0.98
14	14	0.04	1.8	8.8	2.1	1	23	957	980	957	980	0.93

Sequence Information

Coding Sequence: ATGTTAAGACATCCTCCTCCCTCAGACTATTGCCGGCTCTGTGTAAAAAGCTGCAAAGATGACCAGCACAGCCTCTATGATGAGACAGGTCAGGCTAATGCGAACCATGATCTTGTGAGCAAATATTTTACTAACGCAATGTTGAATATGGAATGGGAGGGACGCCTTCAATATGTCTGCGGGAAATGTTGGCAGCAAATTTTGAAGTTCCATCAATTCCAGGAGTCGGCTATTGAGGCTCAGAAAGTAGCGATAAAAGAATTTGGGGAAGTTGATAAGGCGAAATCTGAGATGAATATAAAGGAAGAACAACAGGAGTGGCATAAAGCCCAAGAATTTGTACGAACTGAAGATTTAATGAATTCTGCGGAAGAACAAATGGACTGGCATAATGCCAAGGAATTTATAGctagcactgaagattcaacGAAAGCTACCCCCCTTACCTTTGTTATAAAATCTGAAGAACCTTTGGACCTCAACAATGATTATGAAGGGATGTCGCTTCAGGATGGCCACGACCAATTAGCGGATGAAGAAATGTCTCATATGGCCAGTAGCAAAGAAAATGCATCCTTGAGGCAAGACGATGATCACATTGACGATTATAGCTCGAATAATGAAATTCCCTCATCATCTTTGGAACACATTAACCTTTGCTCTTCAGATAAAAATGTTACTGCTACCAAAAAAACTGTAGAGGAATTTGACGAGTTGGTAGCTTTATGGCGAACCTCCTTAAAGTGTGAAATTTGCCATCAGCTAGTGGCCAGCTATTCTCAGTTGGAGGAACATTTTAGAAAACAACATGCTTCAGAAGTTTGTTATCTCATGTGTTGCCAATTGAAGCTGGAATATCGTTACAATATTGAGCAACACATAAACTATCATAATGCCCCGCAGCAGCTTAGATGTGAGGCCTGTTGCAAATCCTACCGTTTTGTGCAATATTTGAGAAATCACATAAGAAAGGTCCACACCAACAAGGGAAAAGATAAAAGTGCTAAAGACAGCGAAACGCTGGAAGGGAATTATCGTTGCGACAAGTGTCCAAAGACCTTTGCAACGAAAAGGAATTTGAGCAAACACAGCAGTGTCCATAAACCCAAGAGTATTGAATGTAACATTTGTGGAAAGTACTTTAGCCGTCAGCGTGCAATGCTTGCGCATATGGCTGGCCACATAGGCGAGAAGACGCATACCTGCTCCTTTTGCCCCAAAGCATTTACCAGACGACCTTATTTGAGCCAACACATGAACGCATCTCATCCCCAGGAATGGAAGAAGATGCAAGACGAGGCGGCGCAAAGTGCAACATTGAAGGGGTATCGGCGAGAAACTCGGGGAGCGAGTGTGGTCTATGTTTGTCTTCATTGTTTCAAGGAGTGTGACAAGCAGTCTGCCATGTACTATCATCTAAGGCGATGTCGAAATGATAATAAGCCAGTAGAGCTTAAAGAGGGGTTTAGGCTTGAAACTCGAGGAGAGAGTAAGGTCTACGTTTGTATTCATTGTTCCAGGGTGTGTGACAAGCCGACTTCCTTGCACCATCGTTACAAGCGATGCCTTAAGGGGGTGTCAATTGAAAGGCCTTTGCTGCCTTTTGAAGATAACCAAACGACCCTGGATTCGTTAAAGCTCGCGGAAATCATGTCCATGTACACATGTCCACTTTGCTGCAGACTATACGAAACAAAACGCCTCCTCCACTCCCACATAAGACGCATGCACCAAAAGAGGCCCGCAATCATCAACCTGCAAACTCTAAACAGCAACAGGCAAGAAGTTGAAGTGGAAGACAAAGACAATGTCCTCAATGAGGCAGCAAATAAGTTTTTGCTCTTTAACTATTTAATTGAGCCGACTGCCAAGGGAGCATACCGTTGCAAAGTATGTTTCAAGGAATATGAAAACACAAATTCCCTGTGCAACCACATTGCCAGTGCGCATTCCAAAATAGCAAAACTCGAGCAAGAATCAATGGAGACAGCAGAGAACCAGGACGATGAAGAAGAAGACATGGCAAACATTCAACTGAAAGATCATGTCATACGCATGGATTCTTTTAAACGCTCCCTCACCGTTATATATAAATGCAAATTATGTCCTAAAATCTATGAGAAAAAGCGAACTATGTTTGCCCATTTGCGGGAGATACACAAGCAAAGTTTCCAACGTGATTCCATTATAACCAGATTTCAGGTGGAAGGGCAGGGCACTGACGTTGCCCCCCGCACCAAGTTTAGATGTGACCTTTGTTCCAAAGAGTATGAAAATCAAGGCTCCATATTTTCCCATGTCAGGACGATTCACAAGCGATCAACTCAAAAACTAAATGAGGCCACTGATCCAACTTATACCAAAATATTAGCGCGTTTAAAAGTGCCTAGCGTAGAAATTGCAACACCAATGCCGCCAAAGGCTTTATACAAATGCCCATTTTGCCCCATGCAATATAAAACGAATGGCTATCTTTACGCTCACACAAGAAGcaatcataaaaataaatttgcaaacTACAACCAGAAAAAACTGCAGTATCGGAACTTATGTGAGCGCTCTCCTAATGGTGGATTCCGATGCAAAATATGTTCTAAGCTATATGAAAAGAAATGTTCGCTATACGGCCACATTAGCCGTCTGCATCCCGCCAAGTTTAAAAATGGCCGACAAGTGGTTGAGGAAAACCTTGCCACCAGCAGCAACACCATCACAAGTGTTTTGTATAGATGTAAATTTTGTACTAAAGCCTATGACAAGATCTATTTGTTGAATACGCACTTACGGCGGACTcacaaaaaaagttcaaaaaagGAATCCTTGTTCCTCAAATATGAGGTGCGTTCTGATAATCCGCCTCGCACCCAGTATAAATGTAAACTTTGTTTCAAGGAATATGACAATCGTTACTCCATCTACAGACATGTCACACAGATTCATAATCAAGACACACTTTACACCAAGATTGTAGTGACGAAGACAACTGATGCAACCAACGCAGGACCAGATAATCATACTTtaaataaagaagaagaagcggaGGATTCATTGATGACCGCTATAGAGGGTAAAGAGTTGAAGATAGAAGAATTTTCGCCTGAGTCATATACTTTGGGAAATGAGAAAATGGTTGTTAATGAAATGCCATCAAAATTTGAAGATGCAACATGGGAAGAAGAAGAATTCATAAAATCCGAAAACGAATTTATTGACCTATAA
Protein Sequence: MLRHPPPSDYCRLCVKSCKDDQHSLYDETGQANANHDLVSKYFTNAMLNMEWEGRLQYVCGKCWQQILKFHQFQESAIEAQKVAIKEFGEVDKAKSEMNIKEEQQEWHKAQEFVRTEDLMNSAEEQMDWHNAKEFIASTEDSTKATPLTFVIKSEEPLDLNNDYEGMSLQDGHDQLADEEMSHMASSKENASLRQDDDHIDDYSSNNEIPSSSLEHINLCSSDKNVTATKKTVEEFDELVALWRTSLKCEICHQLVASYSQLEEHFRKQHASEVCYLMCCQLKLEYRYNIEQHINYHNAPQQLRCEACCKSYRFVQYLRNHIRKVHTNKGKDKSAKDSETLEGNYRCDKCPKTFATKRNLSKHSSVHKPKSIECNICGKYFSRQRAMLAHMAGHIGEKTHTCSFCPKAFTRRPYLSQHMNASHPQEWKKMQDEAAQSATLKGYRRETRGASVVYVCLHCFKECDKQSAMYYHLRRCRNDNKPVELKEGFRLETRGESKVYVCIHCSRVCDKPTSLHHRYKRCLKGVSIERPLLPFEDNQTTLDSLKLAEIMSMYTCPLCCRLYETKRLLHSHIRRMHQKRPAIINLQTLNSNRQEVEVEDKDNVLNEAANKFLLFNYLIEPTAKGAYRCKVCFKEYENTNSLCNHIASAHSKIAKLEQESMETAENQDDEEEDMANIQLKDHVIRMDSFKRSLTVIYKCKLCPKIYEKKRTMFAHLREIHKQSFQRDSIITRFQVEGQGTDVAPRTKFRCDLCSKEYENQGSIFSHVRTIHKRSTQKLNEATDPTYTKILARLKVPSVEIATPMPPKALYKCPFCPMQYKTNGYLYAHTRSNHKNKFANYNQKKLQYRNLCERSPNGGFRCKICSKLYEKKCSLYGHISRLHPAKFKNGRQVVEENLATSSNTITSVLYRCKFCTKAYDKIYLLNTHLRRTHKKSSKKESLFLKYEVRSDNPPRTQYKCKLCFKEYDNRYSIYRHVTQIHNQDTLYTKIVVTKTTDATNAGPDNHTLNKEEEAEDSLMTAIEGKELKIEEFSPESYTLGNEKMVVNEMPSKFEDATWEEEEFIKSENEFIDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -