Scal008750.1
Basic Information
- Insect
- Stomoxys calcitrans
- Gene Symbol
- -
- Assembly
- GCA_001015335.1
- Location
- NW:258013-261341[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.4e-05 0.0039 17.2 0.8 1 23 205 227 205 227 0.97 2 13 0.76 35 4.8 1.6 1 23 265 288 265 288 0.91 3 13 0.077 3.6 7.9 0.6 3 23 430 451 429 451 0.89 4 13 0.0032 0.15 12.2 0.7 3 23 471 492 469 492 0.94 5 13 0.023 1.1 9.5 1.3 2 23 517 539 516 539 0.96 6 13 0.82 38 4.7 6.4 2 23 547 569 546 569 0.96 7 13 0.0017 0.079 13.1 0.1 2 23 654 676 654 676 0.96 8 13 6.5e-05 0.003 17.6 2.2 2 23 683 705 682 705 0.94 9 13 4.7 2.2e+02 2.3 10.1 1 23 731 753 731 754 0.95 10 13 0.00015 0.0071 16.4 0.4 1 23 760 782 760 782 0.96 11 13 8.1e-06 0.00037 20.4 0.6 1 23 788 810 788 810 0.99 12 13 2.1e-07 9.7e-06 25.4 2.0 1 23 816 838 816 838 0.98 13 13 0.00015 0.007 16.4 0.1 2 22 846 866 845 869 0.90
Sequence Information
- Coding Sequence
- ATGGAGAATATCCAAGAAATATGCCGCACATGTCTTCGTCCCAGTCAAAATGAGGATTTAGTTCACATGATGAACATCACAAGTTATTCCAAACATCAAAGAAAAAGTTATGCGGAAATTCTAATAGAATTTGCCAATATGAAAATTATTGAAGATGATGAGGAGAAGATGCCCCAACATTTATGTTCGGTCTGTTGtgaacaaatacaaaaaacgtACCTCTTTGTGAAGCAAATTCAATCGTGTCATGACAAGCTGACCAAGTGTCTTAGAGAGGGAATGCTTGAATTTCCCCAAACgtttgacataaaaaatgaattaCACAGAGGCGAGGAGTCTGAAGAACACACTACATCTTTTGAAACGACAGACTATCATGAACTAGCGGATGCAGTCACAGAAGAAGGTAATTCTGATGGTGCAGATGAATGTGATGATGATCGAACCgttgaaaatatatcaaaaggTGTGTTAGAAGACTCAGACTATGGAGAGGCATTTGAAGAGAGTCTGCAGGACGATAGTCATAATAATGCTGCAgaaaatgatgatgacgacttggaaaatgaaaaaatagaaGTATCAGATGAATCTACTCGTCCAAAACGAGGTTACTCTTGCAAAATTTGTGAAACAGTCTTTAACAACCGGCAGCAAATGAAAATCCATATACTTCAACACAAACAAGAGGGAAAAACgagaaatttcaaaaacttgCCAAGCATTAGTGACCATTTGGTGGATGAAGATGCAAGCGAAAAGGGAACAAATCTTGAAATAgacaatatttcatttcaatgcaatttgtGCGATTACACAGTTGGAACTTATACCGCCTTATATTTTCACAAACGTTCTAAGCATGGAACTGAAGAGGATCgaattaaatgtaaattttgttcgtataaaaatattaaaaaatttgatatgtTTTTGCACATCAAGAAACAACATTTATCGGAGATCAAAGCTCTTAAGCAGAATATGGAGGATGAAGAAAATAATATGAGccaAGCCTCTGAGGAAGAAAACGAAGTTTCGAATGATGGTCCTCATAATGCCATTGATAACGATAATAATGACCCACTTGAAAAGAAGAGCGATATAGTCAGTAAAGGCAAAAACATTTGTACGAGTGGCGATGAGGAATATATTAGAGACATATTACATATGAAAAAGCGGCTGCCCAAGTTATCTCAACGGCGAAgaaactcaaaaacaaaaataattgatGGACAAAAACTTGTAGGAACAACTACACCAACAGAAGAGCTTGAGGCCAATTCATGTTCTTGTTGCGAAATAGTCTTCATAAACAATGACGAACTTATGATGCATATGTTTTTGGAACATAAGGAAGAATGCTCCACAACAGATAATTGTACTGAAACGGATAATGAAGATCTTGCATGCAGTTATTGTTCCTCGAATTTTAATAATAACAGAGATTTAAGAGATCATATCAAAGACCAACATCCAGAACACACAACAAAATGCTTAGGTAAAGATGAAGAGAATTCTACTTTGGCCAGAAAATCAAAGGTGATAAAATGCCGCTTATGCGATTACACAACAAAGTCTTATGCAGGCCTAAACTATCATACAAAATCTAAACATGGAAAAGAAAGTGACAAAATCAAATGCCGATTTTGTTCGTATACCTGCATTAAAAAATTCGATTTATTGCACCACACAAAACGAGTCCACTTGGCCATAgttaaaagtataaaaaagaaagCTGACCAAATTGAACAAACAAAGACaGAAACTGCAGATTCGAGATCCACTGCTGATATGGAAAGCATAGTTCAGGAATATCAAAATCATTCCGCCTTTGTCTGCGATGAAGTTGACGAACAAAATTTACAAGCTTCCAGTGGCGACGAAGAAACAATTCGCGACAttttacaaatgaaaaaaagaatACCAAAATCATTGTCAACCAGTTCTTTCGCTAGACGCTGTGAAGAGTGTGGCAATGTCTATAATAATTCCTTAGCCCTAAGAGTTCACAGACGTTTGGTGCACAAAGAGCGTGAATATAGCAAATGTCCACATTGTGAGAGAAAATATAAAAGGTCATATGATCTAAAACTGCATATACTAGCGAAGCATCCCAATAAATTAGATGATGCAGACAATGACGCGACGCCAAAATACATTCGCAAAAAGCAGGAACGTGAAAAACGTTTCATGTGTACCCAGTGCTCTTATGTCTGCACCACAATAACCTGTTTGACCATTCACACACATCGTCACCACACCGGAGAGAAACCGTATAAATGTGAATTCTGTTCAAAGGCCTTTGTGGTGCCGGCCGATTTGAAAACTCATCGGTATCTGCACACCGGCGAAAGACCTTACCAATGTCCAGTTTGCGAAAAAGGTTTTCGTAATTTGAATGGCATGAAACGTCACAAACGTATACACAGTGAAATCAAACCCTACAATTGCACAGAGTGTGGAAAAGGGTTTTCCAAAAACTATAATCTGAAAATACACAAACGAACGCATATGAAGAAGGAGCAAAAAATCAAATGCTTAGTGTGTGGTAAATTTTTCGCAGATAGAGCACTATTAAATGTCcatcaaatgaatgaaaatcaTCACGAGGAGGTCGAGTAG
- Protein Sequence
- MENIQEICRTCLRPSQNEDLVHMMNITSYSKHQRKSYAEILIEFANMKIIEDDEEKMPQHLCSVCCEQIQKTYLFVKQIQSCHDKLTKCLREGMLEFPQTFDIKNELHRGEESEEHTTSFETTDYHELADAVTEEGNSDGADECDDDRTVENISKGVLEDSDYGEAFEESLQDDSHNNAAENDDDDLENEKIEVSDESTRPKRGYSCKICETVFNNRQQMKIHILQHKQEGKTRNFKNLPSISDHLVDEDASEKGTNLEIDNISFQCNLCDYTVGTYTALYFHKRSKHGTEEDRIKCKFCSYKNIKKFDMFLHIKKQHLSEIKALKQNMEDEENNMSQASEEENEVSNDGPHNAIDNDNNDPLEKKSDIVSKGKNICTSGDEEYIRDILHMKKRLPKLSQRRRNSKTKIIDGQKLVGTTTPTEELEANSCSCCEIVFINNDELMMHMFLEHKEECSTTDNCTETDNEDLACSYCSSNFNNNRDLRDHIKDQHPEHTTKCLGKDEENSTLARKSKVIKCRLCDYTTKSYAGLNYHTKSKHGKESDKIKCRFCSYTCIKKFDLLHHTKRVHLAIVKSIKKKADQIEQTKTETADSRSTADMESIVQEYQNHSAFVCDEVDEQNLQASSGDEETIRDILQMKKRIPKSLSTSSFARRCEECGNVYNNSLALRVHRRLVHKEREYSKCPHCERKYKRSYDLKLHILAKHPNKLDDADNDATPKYIRKKQEREKRFMCTQCSYVCTTITCLTIHTHRHHTGEKPYKCEFCSKAFVVPADLKTHRYLHTGERPYQCPVCEKGFRNLNGMKRHKRIHSEIKPYNCTECGKGFSKNYNLKIHKRTHMKKEQKIKCLVCGKFFADRALLNVHQMNENHHEEVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -