Basic Information

Insect: Stomoxys calcitrans
Gene Symbol: grau_2
Assembly: GCA_001015335.1
Location: NW:2068699-2078283[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.87 40 4.6 1.7 6 23 264 281 264 281 0.95

2 18 0.0021 0.095 12.8 4.6 1 23 287 310 287 310 0.94

3 18 0.67 31 4.9 1.3 1 17 318 334 318 340 0.86

4 18 0.15 7 7.0 0.3 1 23 348 372 348 372 0.95

5 18 0.015 0.7 10.1 1.0 3 23 379 399 378 399 0.97

6 18 0.31 14 6.0 0.1 2 23 408 431 407 431 0.84

7 18 0.00024 0.011 15.8 3.2 1 23 438 461 438 461 0.97

8 18 8.4e-05 0.0039 17.2 2.1 1 23 466 488 466 488 0.96

9 18 0.0001 0.0048 16.9 2.4 1 23 494 517 494 517 0.98

10 18 0.75 34 4.8 0.6 6 23 838 855 838 855 0.97

11 18 0.00097 0.045 13.9 4.7 1 23 861 884 861 884 0.92

12 18 0.00091 0.042 14.0 0.3 1 20 892 911 892 914 0.93

13 18 0.14 6.5 7.1 0.3 1 23 922 947 922 947 0.95

14 18 0.0076 0.35 11.1 2.8 1 23 952 974 952 974 0.97

15 18 0.26 12 6.2 0.1 3 23 984 1006 983 1006 0.87

16 18 7.2e-06 0.00033 20.6 1.0 1 23 1013 1036 1013 1036 0.97

17 18 6e-06 0.00028 20.8 1.2 1 23 1041 1063 1041 1063 0.97

18 18 3.9e-05 0.0018 18.3 2.2 1 23 1069 1092 1069 1092 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.87	40	4.6	1.7	6	23	264	281	264	281	0.95
2	18	0.0021	0.095	12.8	4.6	1	23	287	310	287	310	0.94
3	18	0.67	31	4.9	1.3	1	17	318	334	318	340	0.86
4	18	0.15	7	7.0	0.3	1	23	348	372	348	372	0.95
5	18	0.015	0.7	10.1	1.0	3	23	379	399	378	399	0.97
6	18	0.31	14	6.0	0.1	2	23	408	431	407	431	0.84
7	18	0.00024	0.011	15.8	3.2	1	23	438	461	438	461	0.97
8	18	8.4e-05	0.0039	17.2	2.1	1	23	466	488	466	488	0.96
9	18	0.0001	0.0048	16.9	2.4	1	23	494	517	494	517	0.98
10	18	0.75	34	4.8	0.6	6	23	838	855	838	855	0.97
11	18	0.00097	0.045	13.9	4.7	1	23	861	884	861	884	0.92
12	18	0.00091	0.042	14.0	0.3	1	20	892	911	892	914	0.93
13	18	0.14	6.5	7.1	0.3	1	23	922	947	922	947	0.95
14	18	0.0076	0.35	11.1	2.8	1	23	952	974	952	974	0.97
15	18	0.26	12	6.2	0.1	3	23	984	1006	983	1006	0.87
16	18	7.2e-06	0.00033	20.6	1.0	1	23	1013	1036	1013	1036	0.97
17	18	6e-06	0.00028	20.8	1.2	1	23	1041	1063	1041	1063	0.97
18	18	3.9e-05	0.0018	18.3	2.2	1	23	1069	1092	1069	1092	0.98

Sequence Information

Coding Sequence: ATGATATGCTGTATTTGTGTTACACAGGCTCAAGAGgttctcgaaatattcggtGAAGTTGGAGaacaattggatatagctggtgtTATGAAGGAACATTTCTGGTTTAAACCCCAACCGAACGACGAAATTTGCATCACGTGCTGGGATAAAATCAAAGACTTTCATGAATTTTATCATACTACAGAAAAGGCACACAAGAATTTGCATGCATTTAAAAGTGAGACAATTCTTATAAAGGAAGAAGAAACTACACCTATAAAAAAGGAATTGTTGGAGACATCTTTGGCTAGTGATGAGAAGTCAATACAAATTGAAGTAGAAATCAGCCCAAACAGAAGGCTTTCCTCTCCTCAAGTAGAATATATTTTGGAAAAGAATCCTTTAGATGATGACAATGAAGCAGATGAATGTGATTCCGATAATGAGTATGTCGACAACACTTTGCCTGATTATGAAGCATCATGGTCTTCTTCCACCTCATCTAATTCTGAGGACGAAGCAAATTTGCCTACAAAGAAGAAGCAATTGTTAGATGGTAAGGAAGCTAAGGAAGCAAAAGTGAAAAGAAAAAGGAGGCTTGGCAAAGCTCTCGTGGGTAAAAAGCCTGATGAGGAGGATAACACAAAGAAGAAGCGAAAGAGACTAGACCCAAAATTGACTGAAGAAATGATACAAAAGCACATACCTATGATATGTAATCTCTGCAATTTTGATTGTAAAACATTTATCGGTGTGGGCAATCACTTTAAAGAGTTTCATGCGAAAACAAAGCCCTACATAATGTGTTGCAATAAGAAATTTACCAGGCGTCACTATATAGCTCAACACGCATTACAGCACGAAGATCCAAACTGTTTCAGGTGTGAAGCGTGTAATAAATCATTTAAAACTACATATAACCTTCATACGCACAATTTATCATTCCATCAACAAGAAGAAAATGGTGTACATGCCTGCGAGTTTTGCCCTCAAAAATTTCCTCGGCGCAAACTATTGGAATTCCATAAGCCCACGCACATACCTAAGGACCAGTGGTCTTTCTTTTGCACTAAATGTCCAACTCCAAGACCttttgctagtgaatatttattaaaaactcATGAAAGTGTACACAAAAGAGAGACTAATATTTGTCATGTCTGTGCCAAGGAAATCaaagataaatatttatttgagaagCATGTTCGTTTACATTTTGAGGATAGTGGTCCAAGAGTAAAATGTCCTTACCCTGATTGTGAGTCTTGGCTGAAAGACGAATATAATTTAAAGGATCATCTTAGGAGACATAATAGCGAAGGCATCATCTACAAGTGTCCAGAATGTGAAAAGATATGTAAGAATCGCAAGGCTCTGTCCCAACATAAACGTAACAATCACTCGAATAAGCAATACAAATGCGGACAATGCGGAAAAACCTTTAAGAAAGCGATAACTTTAAAGGAACACACAGCACACCATACGGGTGAAAGTCTTTATAAGTGTCCGTTTTGTCCAAGGACATTCAACTCAAATGCAAATATGTATTCCcataaaaagaaacaacatCCTGTTACTGAAAGAAAGTGTGAGACTGCAGTGAATAGTAACAAATCTATAATCAGAAAAATGTTGTGCTGTGTATGCTTGCTGGAGAACTCTGATACTACAGAAATACATAGTGAAATgggaaaacaaatgaaaatggcAGATATAATAAAGCAACACCTTTGGTTTAAGCCTCAACCTAATGATGAAATGAGCTCACACATATGCATAGTGTGTTGGGAAACCATACTCGACTTTCATGAGTTCTATCAACAGGCCGAAAAgattcatgcagaatttcaaatCAGCAACAAGAAAAGATTTGATATTAAAGAAGAGGAAACACCTTCAGTTCATAATCCCATTAAATTGGAAAACGATGAATTGTATGGTGACATATTGCAATTAGAGATAGAAATCGATGGCAAATCCAAGCAAAAGCAGCCCGCTAAAAAtgaagaaattcaaaaaaatcccCTGGATCAGCTGCAAAAAGAATTGGAATGCGAAATAGACGCTGATTTGGAAAGTGAATTGCAAATTCCTGATATATGGCAAAGCAATCCATTGGACGATGTCAATGTGCATGATATAAATGATGAAGATCATGATATGGACACTGAAATCGAGGGATTTTCCGAAGATTTTGAGCCTTCTGAAAATAGTGACGAGGAAACCAGTTCTGACGAAGAATGGACCAGTAAAAAGGCCCCAGAGGAAGCGAATAATACCGTCAGTGATTGCAAAGTAATAAAAAAGAGACGAAAGCGAAAGCCCAAAAATGATTCCGAGCAAAATACAGATGATGTtaagaaaaaacgaaaagtTCAATATAAATTCGACTATAAGCATACAGAGGAAATGATAAAAAAGCACATTCCTATGGGTTGtaatttgtgtgtttttgttggtaaaactttttctgatattGTCGATCATTTTAAAGTAAGCCATCCAAAAGTGCGGCCTTACATTACGTGTTGTGATAAAAAGTTCACTAAACGTTTCTATGTGGCGCAACATGCACTTAAACATGAGGATCCCAATTGCTTCAAATGCAACGAATGTAACAAATCGTTTACCACTACTTGTGGTCTCAGAAGTCACAACTTGAACTATCATGCACCAGATGAAGAACGTACATATGTTTGTGATTTATGCCCCAAGAAATTTGCCAGAAGAAATCTTCTGGAAATGCACAAACCATCTCATATACCCAAAGATCAATGGCAGTTCTTTTGTACAAAATGCCCTAGTCCCAAAGCTTTTGCAAGTGTTTATTTGTTGAATGTGCATACAAGTATGCAGCATAAAAGAGCGAAACATGTTTGTCATGTGTGTGCCAAAGAGATAAGAGATAAGTATTCGTTTGAAAAACATGTTCGTCTGCATTTCGAAGCGAGTGGCCCACGAGTTCCATGTCCTTATCCGGATTGTGATAGTTGGCTTAAAGATGAGGACAATTTGAAGCAACATTTAAAACGTCATAATCCCGAGGGTGTTATATACAAATGTCCAGAGTGTGACAAAGTGGTTAAAAATCGTCGGGCTCTTACCAATCATAAGCGATATAGTCATTCGAATGAAACGTTTCAATGTGAACAATGTgataaatcatttaaaaaagcTATATCTCTAAGGgaACACATGACTCAGCATACAGGAGAAACATTGTACAAATGTCCATTTTGTCCAAGAACTTTTAATTCAAATGCCAACATGCATGCTCATAAAAAACGAGCGCATCCCATTGAATGGGACGAATGGCGAAAAAATAAAACGGGAAGTTCTCAAGTTCTAATAAAGAACTTGAATGCATCATGA
Protein Sequence: MICCICVTQAQEVLEIFGEVGEQLDIAGVMKEHFWFKPQPNDEICITCWDKIKDFHEFYHTTEKAHKNLHAFKSETILIKEEETTPIKKELLETSLASDEKSIQIEVEISPNRRLSSPQVEYILEKNPLDDDNEADECDSDNEYVDNTLPDYEASWSSSTSSNSEDEANLPTKKKQLLDGKEAKEAKVKRKRRLGKALVGKKPDEEDNTKKKRKRLDPKLTEEMIQKHIPMICNLCNFDCKTFIGVGNHFKEFHAKTKPYIMCCNKKFTRRHYIAQHALQHEDPNCFRCEACNKSFKTTYNLHTHNLSFHQQEENGVHACEFCPQKFPRRKLLEFHKPTHIPKDQWSFFCTKCPTPRPFASEYLLKTHESVHKRETNICHVCAKEIKDKYLFEKHVRLHFEDSGPRVKCPYPDCESWLKDEYNLKDHLRRHNSEGIIYKCPECEKICKNRKALSQHKRNNHSNKQYKCGQCGKTFKKAITLKEHTAHHTGESLYKCPFCPRTFNSNANMYSHKKKQHPVTERKCETAVNSNKSIIRKMLCCVCLLENSDTTEIHSEMGKQMKMADIIKQHLWFKPQPNDEMSSHICIVCWETILDFHEFYQQAEKIHAEFQISNKKRFDIKEEETPSVHNPIKLENDELYGDILQLEIEIDGKSKQKQPAKNEEIQKNPLDQLQKELECEIDADLESELQIPDIWQSNPLDDVNVHDINDEDHDMDTEIEGFSEDFEPSENSDEETSSDEEWTSKKAPEEANNTVSDCKVIKKRRKRKPKNDSEQNTDDVKKKRKVQYKFDYKHTEEMIKKHIPMGCNLCVFVGKTFSDIVDHFKVSHPKVRPYITCCDKKFTKRFYVAQHALKHEDPNCFKCNECNKSFTTTCGLRSHNLNYHAPDEERTYVCDLCPKKFARRNLLEMHKPSHIPKDQWQFFCTKCPSPKAFASVYLLNVHTSMQHKRAKHVCHVCAKEIRDKYSFEKHVRLHFEASGPRVPCPYPDCDSWLKDEDNLKQHLKRHNPEGVIYKCPECDKVVKNRRALTNHKRYSHSNETFQCEQCDKSFKKAISLREHMTQHTGETLYKCPFCPRTFNSNANMHAHKKRAHPIEWDEWRKNKTGSSQVLIKNLNAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -