Basic Information

Insect: Stomoxys calcitrans
Gene Symbol: -
Assembly: GCA_001015335.1
Location: NW:1995123-1997550[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0014 0.065 13.4 0.9 1 23 239 262 239 262 0.97

2 10 0.00019 0.0087 16.1 0.1 1 23 306 329 306 329 0.93

3 10 0.00027 0.012 15.6 2.7 1 23 335 357 335 357 0.97

4 10 9.2e-07 4.2e-05 23.4 0.9 2 23 370 391 369 391 0.97

5 10 0.0025 0.11 12.6 4.4 1 23 397 420 397 420 0.97

6 10 2.8e-05 0.0013 18.7 2.8 1 23 425 447 425 447 0.98

7 10 0.0024 0.11 12.7 0.1 2 23 453 474 452 474 0.96

8 10 1.6e-07 7.5e-06 25.8 0.8 1 23 480 502 480 502 0.96

9 10 0.063 2.9 8.2 2.9 1 23 508 530 508 530 0.96

10 10 0.00027 0.013 15.6 6.6 1 21 536 556 536 557 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0014	0.065	13.4	0.9	1	23	239	262	239	262	0.97
2	10	0.00019	0.0087	16.1	0.1	1	23	306	329	306	329	0.93
3	10	0.00027	0.012	15.6	2.7	1	23	335	357	335	357	0.97
4	10	9.2e-07	4.2e-05	23.4	0.9	2	23	370	391	369	391	0.97
5	10	0.0025	0.11	12.6	4.4	1	23	397	420	397	420	0.97
6	10	2.8e-05	0.0013	18.7	2.8	1	23	425	447	425	447	0.98
7	10	0.0024	0.11	12.7	0.1	2	23	453	474	452	474	0.96
8	10	1.6e-07	7.5e-06	25.8	0.8	1	23	480	502	480	502	0.96
9	10	0.063	2.9	8.2	2.9	1	23	508	530	508	530	0.96
10	10	0.00027	0.013	15.6	6.6	1	21	536	556	536	557	0.96

Sequence Information

Coding Sequence: ATGTCGTTGGAACTGGCATCAACGTGCCGAACTTGTTTGGACGAGGACAGCAGATATTACCAGCTGGAGGATTATGTGGACGAGCACCATACAATATTGGAAATGCTACATGAAGTCTTAccccaaattaaaataaaagacgAGTCTGGAATAGAGTTTtcttcattgatatgtgaaacaTGTGTGGACAAATTGGTAACAAGCTTTATGTTTCAACGTCTATGCATAGACACCGATTCCCGTTTGCGCCAAATGCTGTTACACCCCGTTGAAGAGGTGGTCGTTGAACAACAAAGCGATTGTGATGAGCCTTTGTTGGAAGAGGAAAGCCTCCAGGAACATAtcgaaatcgaaataaaaaatgaatGCGACGACGATGAagtagatgatgatgatgatgactatgATTACGAAAATTACGATTTTGATGAGGATAGAATAGCCGAAATCGACGGTGAAGAATTTGGAGAAGATGAAGAAAGGAATGACATTAGTGGCGAGGAAAACTATATACAGGAAGAAGATGAAGACTGGAAGGATTCCGAtggggaggaggaggaggagaatCTATTGCCTGAAATGACTAATGATGAGAAAGAGGCAAAAGATTCATTAAAGCCGCCAGAAACTAAaACTGAACAGGAAATACTAGAGGAAAAGGCCAGCAAATTGTCGATACCCTTTCAAATCATCAAAATTCATGAATATAAAAGATTCACGTGCACGGAATGTGAAAAAATATACGATCGTATTTCACGAGTAGAACAACATatgaacaaaaaacacaaattcaGTCTTAAGGACGTCAAATTGTACATTAGGTACGTCGAAAGCAAATTGAATGAGACGAATATTGAAAATTACACAGAATCGCCATACAAAACTAAAAGAACATCTTTTGGTAGTAATCGCCATTTTCCGTGTGAAATTTGTGGAAAAGTATTCGACGGTTATACACGCTTGCAGCGGCATGAGGCATCGGTGCATTCCACGGATAAGCCACATATTTGTAACATTTGCCTAAGGGGATGTGCCAGCCAAGACTCCTTGAGAAGGCATCAAAAGGTTCACTTTAAAAAAGAGGATGATGATACTGGAGAAGGCCTTAAATGCCCATACTGTTCGAAACGTTTTACCAGTAAAAATGAATTGGCCGCTCACCGTTTGACACACgcttcaaattgcaaattcgtCTGCAAAATCTGTAAACGTAAATATATGACACTCAGGACATTATGTGACCACATTAAAAGAACGCATCCAAATAAAACTTTCCCTTGCAAGCAGTGTGACAGAAAATTTCCGCTTAAGGAGCAACTATCTCGACACATGCATTCGCACAGGAAAGTTGAACTCTATTGTTCGATATGTGAAAAGGAGTTTACCTCAGAACTTGCTGTGAAAGAACACATGTATATTCACACTGGTGAAAATCCATACCTATGTCCAAAGTGTGGCAAAGGATTTAAATACAGCAGCAGTTTGCGAAAACATATAGCACGTCATAGCGATCAGCTGATATTTGAATGTCCCTTTTGCGAACGTAAATTTAAGTGCCGAGAAGATGTAAATGCTCACAAAAAGCTTCATCTTAACGACAAGCCTTTCAAATGTTGCAAATGTGGCATTAGATTTACCAAAAGATACCATCTGAGACGCCACCGAAAGTTGATATGTACATAA
Protein Sequence: MSLELASTCRTCLDEDSRYYQLEDYVDEHHTILEMLHEVLPQIKIKDESGIEFSSLICETCVDKLVTSFMFQRLCIDTDSRLRQMLLHPVEEVVVEQQSDCDEPLLEEESLQEHIEIEIKNECDDDEVDDDDDDYDYENYDFDEDRIAEIDGEEFGEDEERNDISGEENYIQEEDEDWKDSDGEEEEENLLPEMTNDEKEAKDSLKPPETKTEQEILEEKASKLSIPFQIIKIHEYKRFTCTECEKIYDRISRVEQHMNKKHKFSLKDVKLYIRYVESKLNETNIENYTESPYKTKRTSFGSNRHFPCEICGKVFDGYTRLQRHEASVHSTDKPHICNICLRGCASQDSLRRHQKVHFKKEDDDTGEGLKCPYCSKRFTSKNELAAHRLTHASNCKFVCKICKRKYMTLRTLCDHIKRTHPNKTFPCKQCDRKFPLKEQLSRHMHSHRKVELYCSICEKEFTSELAVKEHMYIHTGENPYLCPKCGKGFKYSSSLRKHIARHSDQLIFECPFCERKFKCREDVNAHKKLHLNDKPFKCCKCGIRFTKRYHLRRHRKLICT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -