Scal000705.1
Basic Information
- Insect
- Stomoxys calcitrans
- Gene Symbol
- -
- Assembly
- GCA_001015335.1
- Location
- NW:807693-811238[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00048 0.022 14.8 0.2 1 23 230 252 230 252 0.96 2 12 0.00016 0.0073 16.3 6.8 1 23 260 282 260 282 0.98 3 12 3.5e-05 0.0016 18.4 1.4 1 23 288 310 288 310 0.98 4 12 0.0006 0.028 14.5 0.1 3 19 318 334 317 339 0.92 5 12 0.00039 0.018 15.1 3.8 1 23 345 367 345 367 0.98 6 12 1.3e-06 6.1e-05 22.9 0.4 1 23 373 395 373 395 0.97 7 12 0.00065 0.03 14.4 0.3 1 23 508 530 508 530 0.96 8 12 8e-05 0.0037 17.3 2.4 1 23 538 562 538 562 0.95 9 12 0.06 2.8 8.2 2.7 1 23 568 590 568 590 0.97 10 12 0.22 10 6.4 0.2 3 19 598 614 597 619 0.91 11 12 0.0019 0.086 13.0 3.1 1 23 625 647 625 647 0.96 12 12 3.6e-06 0.00017 21.5 1.0 1 23 653 675 653 675 0.97
Sequence Information
- Coding Sequence
- atgcaATTTATAAACAGCAACACGGATCAATATTCCGAAAAACAAAATCTCATAATCTGTCGAGCTTGCCTCAATTCAATACAAGATACCATCCCATATGGCATTCATACAATGGATTCACAAATTCGCTTATGGCTACAGGATCCCACATTGGAAAATTCTGTTATAGAAGATGAATTTCCCAAAAATGTTTGTCATTCTTGTCATCAAACGttggaaaatttcctaaagTTTTATCAAATGTGTTTGCGCTCTCGGGAATTGTACACAGAAATGATGAAGAAGGGCCAACGTACTACCAGTGGGATGTCCGACAACAGTGATACTTTGAATGCAAGTGCAAAAGAGGTCAATTGCGATTGGCTGGAGTTTGATTTTGTGGCATTACCAAAATCGTTGTTAACAGACAGAAGTAAAACAGATTGCAAACTTGATCCAAATGTCAAGGAAAagatTCCCTCCCCAGCTACCTCCAAAAAGAAGGAAGATTGTATTGTTTCCCTTTTTGACCTCAATGATGCTTGTAGTGATCATTCTAGCAACGATAACATTGAGAGAGCAAGCAATTCCTTTGCTACATGCAAAGCtggcaaaattcaaatttctgcACCCCAAGATAAGAGTTCTAAAATAACCGTGGTTAAAATAGATCGCAAACAAAAATCCCACAATGAAGATAAACCCCAACACATATGTGAAGAATGTGGGAAAGTTTATCCATCATTAGCAAGACTGATAGAACATCAGTATTCGCATAAACCCAAAACAGAATATCCTTATCATTGTAAAGAATGCAATAAGGCTTTCAAACATCGTCAAACCTTTATGGCCCATCAAATGCGTCATGCTGGCATTAAGAACTTTCAGTGTCCCTATTGTGACATGAAGAAAACTACCAAAAGTGAATTAAGGGCACATATGAATTATCATACCAAAGAACGCCAGTGGTTGTGTCCAAAGTGTCCTTTGATATTTAGTAGTGCAGCCAATTTGCGTCGACATGATCAGGTAGTACATCAGGGAATACGACGTTATAGCTGCAGTTATTGTTCAACGACTTTTGGCAAACAGGAGTCTTTGAAACATCACGAAATGCGTCATACAGGAGAAAAACCGCATGTGTGTTTAATATGTGATAAAAGATTTATACAGTCGGTGGCATTAAAGGCCCACATGAAAATCCATAATAAAGGTATTCTTAAGGGGACCTCGCATAGTTTAAGAAGTCCCAAGCAGGAGAATGACTCAAGCGATTCATTTGATCACCAATATGATGAAACTCATACTGAGCCCTTGATAGACAAGACCGAGGAATCTGAAAAAGGTAGCAATTGTCATactcaagaaattaaaaatgagAAATGCTCTCATGATAACTCAAGTGATGAGGATCAACCTCTtaccaaaagaaaaaagacCAAAAGGAAAAACCCCAAAACTGACCTTCCTCCTCTAGAGGGTAAAGCTAAAATCCCACGCTCacgtaaagaaaaaattaaaacaccaGATGAAACTCCCCAACATGTCTGTGAAGAATGTGGCAAGGTGTATAAAGCATTAGTAAAACTTATTGAACATCAATATTCTCATAAACCATTAGAGGAATATCCCTTTCACTGCGATGAACCCAATTGCGGCAAGGCATTCAAAACAAAGAGCAGCTACCAGGAGCATAAACTTCGCCATGctggtattaaaaatttccaaTGCCATTTGTGTGATATGAAGAAAACGTCaaaaaaagaacttgacatacaCATAAATTATCACACCAAGGAACGCCAATGGCTATGTCCCAAGTGTTCAATGTTATTCTATAGTGCTAATGATTTACGTTCCCATGACAAGATAGTGCATTTAAGAATACGACGCTTTTTTTGCCGCTTTTGTGATCAAGCCTTTGCTAAAAACTATGCCCTTAAACATCATGAGATGAGGCATACGGGTGAAAAACCGCATGTATGTTCTGAATGCGGCAAGGGCTTTATACAAATGGTCTCACTGAGGACACACATGAAAAGTCATAAACTGTGCGAGCAAAAGAAatccacaaaaacaaataaaggggAAAAGGTCTAA
- Protein Sequence
- MQFINSNTDQYSEKQNLIICRACLNSIQDTIPYGIHTMDSQIRLWLQDPTLENSVIEDEFPKNVCHSCHQTLENFLKFYQMCLRSRELYTEMMKKGQRTTSGMSDNSDTLNASAKEVNCDWLEFDFVALPKSLLTDRSKTDCKLDPNVKEKIPSPATSKKKEDCIVSLFDLNDACSDHSSNDNIERASNSFATCKAGKIQISAPQDKSSKITVVKIDRKQKSHNEDKPQHICEECGKVYPSLARLIEHQYSHKPKTEYPYHCKECNKAFKHRQTFMAHQMRHAGIKNFQCPYCDMKKTTKSELRAHMNYHTKERQWLCPKCPLIFSSAANLRRHDQVVHQGIRRYSCSYCSTTFGKQESLKHHEMRHTGEKPHVCLICDKRFIQSVALKAHMKIHNKGILKGTSHSLRSPKQENDSSDSFDHQYDETHTEPLIDKTEESEKGSNCHTQEIKNEKCSHDNSSDEDQPLTKRKKTKRKNPKTDLPPLEGKAKIPRSRKEKIKTPDETPQHVCEECGKVYKALVKLIEHQYSHKPLEEYPFHCDEPNCGKAFKTKSSYQEHKLRHAGIKNFQCHLCDMKKTSKKELDIHINYHTKERQWLCPKCSMLFYSANDLRSHDKIVHLRIRRFFCRFCDQAFAKNYALKHHEMRHTGEKPHVCSECGKGFIQMVSLRTHMKSHKLCEQKKSTKTNKGEKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -