Scal005256.1
Basic Information
- Insect
- Stomoxys calcitrans
- Gene Symbol
- -
- Assembly
- GCA_001015335.1
- Location
- NW:284786-287535[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0014 0.067 13.3 4.1 1 23 93 116 93 116 0.94 2 15 7.1e-05 0.0033 17.5 0.9 3 23 124 145 122 145 0.96 3 15 0.00043 0.02 15.0 2.3 1 23 152 175 152 175 0.97 4 15 6.7e-05 0.0031 17.5 4.3 1 23 278 300 278 300 0.98 5 15 0.00014 0.0064 16.5 2.8 1 23 306 328 306 328 0.94 6 15 0.0024 0.11 12.7 1.0 1 23 337 359 337 359 0.98 7 15 0.01 0.48 10.6 2.6 1 19 367 385 367 387 0.95 8 15 4 1.9e+02 2.5 0.2 2 23 425 446 424 446 0.91 9 15 0.044 2 8.7 4.9 1 23 452 474 452 474 0.98 10 15 9.7e-06 0.00045 20.2 3.4 1 23 480 502 480 502 0.97 11 15 0.017 0.79 9.9 8.3 1 23 509 531 509 531 0.99 12 15 0.00022 0.01 15.9 0.5 1 23 593 616 593 616 0.92 13 15 5.4e-05 0.0025 17.8 4.4 1 23 622 644 622 644 0.99 14 15 2.7e-05 0.0013 18.7 0.4 2 23 654 675 654 675 0.98 15 15 0.0088 0.41 10.9 3.2 1 23 681 707 681 708 0.95
Sequence Information
- Coding Sequence
- ATGGAACATTCTGTGGAGATACTGAGCAATATTTTATTGCCaccttgtttttgttatttttgtaaatttcaaaTTGGTGCCGATATGGATTTGAGACAGCATTATGAAGAGTACCACCGACATGAATTTCTTGAATATTACCCAAAAGAAAGTGCGGAGCAATATCACAAAGAGGTCAGTGAAGAGACTATGACGCCTGGATTCCTAGATATACTGCCTCAGGGGAAAGCAAAGGCAAAAAATCGCAGGAAAAAATTTGAGGAGCATGAAAAACCTCATCAGTGCCCTATATGTAAGAAAGGTTTCACTCAAAGGTCTTCCTGTTTACGTCATGTCAAGGAATTGCATGAACAGCCCAAAAGTCTGGCATGTGATCAGTGCGAATTAAAATTTAATAATCAAACAAATTTACGAACACATCTGAAACGCATACATGGTGTAACATTTGAAGTTTTCAAATGCCCACACTGTGCTCGTATATATCATAAACCCTCTTCTCTATCGCGGCATCTACTTTCTGCTCACAATGATATAAAGGCAGAGTTATCCCAAGCGACTAATGGAGATGTTGGATACATGGAGAACGATCCTCAATTTCTAGCTGAAAATGTTCTGCAGGAGCTTAAGCAATTTCAAAAGGCCATAGCAGTAACAGAGCACATCGAAGGTTGTGAATTAAGCCAAGCTGTTGAAAGTTCCGAGAATAAAACAGTAATTACCTCAATAGAAGATGCTGTGGTAGAAGAAATTATCATAAAAGATCGTCTTAATCCTCAAGATATTATAATGGAACATAAAGTGCAAAGAATCAAAAGATCAGACGGTTACTATTACATTTGTGAATACTGCAGCAAGGAATTTCGAAAGAgatggagctatataagACATCATCGAACACACACAAAAGTTCGCCCCTATGTCTGTGTAGTGTGCAAAAAATCTTTTCCCACCCAAAATGAGCTAAAGCGACACTGCTCAACACATATACTCAGTGAGAAAAAACAGTTTTACCGATGCCCAAAGTGCATGAAAAGTTTTTCCACAATAACTGGATTTGATACGCATATAAGttCCCATACGCCTGAGAGCTACATAAGTTTTAATTGTAAACAATGTCCCAAAGTATTCTCCTCACTGAAGATGTATTTTAATCATAATCATGCTGATCCTGAATTGGACATTTTAAAATCACTGCTACCATCTCCTATATGCATGTTAGAGGGCAAAGAAAGGGATTATGTGGAAGAGAAGCAGAAAACAAATACCGATTTAAAATGTGCGCTATGTGGCCTGGAACAAATTTCAATGCAAGCTCTTAAGCAGCATGAAAAACGTCATAATAACCTGCTGAAACATCAATGTATGGTGtgcaaaagATTTTATACTTCCATGTGTACATTGCGCGTTCATGCCAGAATTCATCTGAATAATCGTAAATTTAAGTGCAGTCAGTGCAATAAGAAGTTCCAAACAAAATACGACCTAAAACGGCATGAGTTAGTGCACAACAACTCCATAAAAAACTATAAATGTCGTTATTGTGATCAACATTTCAAAACCATATCGTATTGCCGCAGTCATATGATGACACATCTGAAGCAATTAATTAAGACTAGTGTTAACGTTGCTAATAAAAAAGAAGCCACAGAACTCCCCCAACAGCAGGTTGTCTTACAGGCAGTGGTacaaaacaacaataatttgGAAATTGTCATAAAAAACATGACCATGCAAAAGAAACCGAAAAGGCCAAGGCAACCCAAAGCACTAGAGGATTTCGTCTGCATAAAGTgtggacaaaaatttcgttatCAAGCATGGCTTAGAAAACATATGATTGAAAGTCATTCAACAGATAAGCCTTTCCAATGCGAAACTTGCTTTAaagcttttaaaaaaatgtctacATTAAAACATCACATTTTGACACATGCGAATCAAGAGGAGCAGGCAAAGCCAACATGTCAAGTGTGTGGCAAGTTATATGCCAATCAAAAATCGTTACGAGTACACCTGCGCATACACACCGAAGAGAAACGCTTTAAGTGCAGCTTGGATTCATCGTGTACGGCTGCGTTTAGAACATCTGGCCATTTGGCAAGCcatcaaaaatcaaaacatCATTTAAATAcaataaaaaaaaaaaaacattttcaatgcaATTCATTAAATATCACTAACTACAAACTAAATTGCCAGCTAATTGTGAGAAGATCAAGAGGTTGA
- Protein Sequence
- MEHSVEILSNILLPPCFCYFCKFQIGADMDLRQHYEEYHRHEFLEYYPKESAEQYHKEVSEETMTPGFLDILPQGKAKAKNRRKKFEEHEKPHQCPICKKGFTQRSSCLRHVKELHEQPKSLACDQCELKFNNQTNLRTHLKRIHGVTFEVFKCPHCARIYHKPSSLSRHLLSAHNDIKAELSQATNGDVGYMENDPQFLAENVLQELKQFQKAIAVTEHIEGCELSQAVESSENKTVITSIEDAVVEEIIIKDRLNPQDIIMEHKVQRIKRSDGYYYICEYCSKEFRKRWSYIRHHRTHTKVRPYVCVVCKKSFPTQNELKRHCSTHILSEKKQFYRCPKCMKSFSTITGFDTHISSHTPESYISFNCKQCPKVFSSLKMYFNHNHADPELDILKSLLPSPICMLEGKERDYVEEKQKTNTDLKCALCGLEQISMQALKQHEKRHNNLLKHQCMVCKRFYTSMCTLRVHARIHLNNRKFKCSQCNKKFQTKYDLKRHELVHNNSIKNYKCRYCDQHFKTISYCRSHMMTHLKQLIKTSVNVANKKEATELPQQQVVLQAVVQNNNNLEIVIKNMTMQKKPKRPRQPKALEDFVCIKCGQKFRYQAWLRKHMIESHSTDKPFQCETCFKAFKKMSTLKHHILTHANQEEQAKPTCQVCGKLYANQKSLRVHLRIHTEEKRFKCSLDSSCTAAFRTSGHLASHQKSKHHLNTIKKKKHFQCNSLNITNYKLNCQLIVRRSRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -