Basic Information

Insect: Stomoxys calcitrans
Gene Symbol: -
Assembly: GCA_001015335.1
Location: NW:174092-188797[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.2 54 4.2 3.8 1 23 29 52 29 52 0.93

2 14 0.0097 0.45 10.7 1.1 1 23 427 449 427 449 0.98

3 14 7.9e-05 0.0036 17.3 0.9 1 23 455 477 455 477 0.98

4 14 3.6e-05 0.0017 18.4 0.4 1 23 483 505 483 505 0.96

5 14 0.0055 0.25 11.5 7.6 1 23 511 533 511 533 0.97

6 14 0.00012 0.0058 16.7 1.4 3 23 541 561 540 561 0.98

7 14 8.2e-05 0.0038 17.3 0.1 1 23 567 589 567 589 0.98

8 14 0.001 0.047 13.8 2.6 1 23 1020 1042 1020 1042 0.97

9 14 0.0035 0.16 12.1 0.2 2 23 1049 1070 1048 1070 0.97

10 14 0.00045 0.021 14.9 0.9 2 23 1077 1098 1077 1098 0.97

11 14 1.8e-05 0.00083 19.3 4.5 1 23 1104 1126 1104 1126 0.98

12 14 0.00023 0.011 15.8 2.6 1 23 1132 1154 1132 1154 0.98

13 14 6.1e-06 0.00028 20.8 0.7 1 23 1160 1182 1160 1182 0.94

14 14 4.9e-06 0.00023 21.1 1.0 1 23 1188 1210 1188 1210 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.2	54	4.2	3.8	1	23	29	52	29	52	0.93
2	14	0.0097	0.45	10.7	1.1	1	23	427	449	427	449	0.98
3	14	7.9e-05	0.0036	17.3	0.9	1	23	455	477	455	477	0.98
4	14	3.6e-05	0.0017	18.4	0.4	1	23	483	505	483	505	0.96
5	14	0.0055	0.25	11.5	7.6	1	23	511	533	511	533	0.97
6	14	0.00012	0.0058	16.7	1.4	3	23	541	561	540	561	0.98
7	14	8.2e-05	0.0038	17.3	0.1	1	23	567	589	567	589	0.98
8	14	0.001	0.047	13.8	2.6	1	23	1020	1042	1020	1042	0.97
9	14	0.0035	0.16	12.1	0.2	2	23	1049	1070	1048	1070	0.97
10	14	0.00045	0.021	14.9	0.9	2	23	1077	1098	1077	1098	0.97
11	14	1.8e-05	0.00083	19.3	4.5	1	23	1104	1126	1104	1126	0.98
12	14	0.00023	0.011	15.8	2.6	1	23	1132	1154	1132	1154	0.98
13	14	6.1e-06	0.00028	20.8	0.7	1	23	1160	1182	1160	1182	0.94
14	14	4.9e-06	0.00023	21.1	1.0	1	23	1188	1210	1188	1210	0.98

Sequence Information

Coding Sequence: ATGGGCTCAGACCAACAAAGTAACAAAAAATGTggcgaaattttgataaatattaaaaagaataataaaacCAAGAGCTATACATTTAAATGCGAATTTTGTAATACAAGTTGTGgccaactaaaaaaattttccctgcATCTCGAGGAAAAACATTCTGTAGAAATATTAGATGAACCAATGCCTTTTTTGAAAGAAGCCAAAGTTGAGGAAGGCAACTTGTCCTTTTCCCCCGAAACGGAAGTCAAGATAGAATTAATGGAAGAAATTGAACATGATACTATCGAAAAGATTGATGAAAGTAAAACTTACACCGTTGAATATCTAGATCCATTGGCGGCTGAGGCAGAGTCCATAGCTTTGAAATACCAGCATGAAAGCGAAGAATATGAAGAAAGTGTAGATGATTCCACTTCTTCTGAGAGCGAGAATGATTATGAGGGAAATAAAGACAAGGTCACCATTAAGGAAGGACATGCAACAACCAACTCTGAAGACACTGAAACACCTACATCTACAAACAAATTGCAATGCAATGTCAATGAAACAGAGTTAACAGTGTGCATATTAAAAGCTTTGGAGAAACAACCTGCTCTATGGGATGTCAAGAGCCGCTCACATAATAAAATTATACGACAAGCTCGTTTCCAAGATATAGCCaatgaaattaatgaaaacCTAAAAATTCAGATAAAATGGGAATTTGTTAGAAATCATGTTAAGGATTTACGCACTTCCTATTCATATGAATATGATAAACAAAAGAAGGGAGAAAATTATGAGATGCCTTGGTATTCGGAGCATATGGGatttcttaaagaaaatataGAAGCTTTAATAAAACATCGAtTCAAGAAGAAAAAGTATAAACGTTTGaAAACTTTGGATGACGCTCACATACCAATTTTTATTGAATGctataaaaattgtgaaattctGTGGCAGGTGAATAAcatcaattttgttttgaaaaccaAGAAAACCGAGACGCTTAAACAAATGATACAAGAGCTAAAGACCAAACACAATGTAGACATTAATCTGCAGGATATGCAAAGAAGTCTGGACTATATAAATCGCCTTTACTCCGAAGATAGAGGCAAACAATTACAgtgtgaaattgaaaaaaaggaatttaaaccaaattcgaAATACTATCACCAACTCTCCTTTCTTAGTGAAAGTCAGGGTCCCTTTTTATGTTGCCACTGCcaagaaattataacaaaatttgaaaaatatcatattcatgtgTCGGAACACACAAAAGTTGTGCCATTCAAATGTGCCCTATGTGAAGTGAGATTCAAGAAGCTTTCCAAATACATTGTGCATGCCAAACGTCATTTGGGTTTGCATAAATATCACTGTGATATTTGCGGCAAGGGCTACCAGTTTCGATCCGAATTGGAATGGCATGTCAGACAGCATACGGGAGAGGAGCcatatttgtgtgaaatttgcgGTGCCAGCTTTCGTTCCCAAAATAGTTATGATAATCATATACGCAGACATGAGAAACGATTTCGTTATGAATGCCACATATGTAAACATGGCTTTAATCATCCCCATAAATTGAAATCCCATGTTAAGGCACATCTCAATATACGTGACATTTTGTGCAATGTCTGTGGCAAAGGTTTTACAGCCATGAATCATTTGAGACGACATCAACAAATACACTCGGGCATAAAGCGTTACAAATGCGATGTTTGTGAAAAAGCCTTTGCACAGGATGCCGGTTTGCGAGCTCATCGAAAACAACATGATGCAGTGGAAGGTCCAAAGAATGGTGGGAGGAAGCGAAGATACAATTATGATaaacccTTCCATGGATATCTTTGGATTTTCCAaactattttatatataaaaatgaataaatacAAGGACTACATTAAATGTGGAGAGATTTACAAGTCACCCTCCATTAATCCCAAGGAAGAAGAATATGTTTTCAAGTGTTTGTGTTACAACGAAGAACATTATATTAATCTTGAAAAGTTTATACTACCACTATGCAGCAATATTATTAACAATGATAAGCTGCTGTACAGAGATACATCACACTGCATCCTTGCAGCATCAGATAGCCAAAATGAAAAACCTAGTGAAGATGTTGAAATCAAATATGAAGATATTGCGAAAGTGGATGTGgatcctttgaatattttaaaaattggctCTTTGGAGGACAGCAAACAATTAACTGAGATCAAGGAGGAATTCCCATTGGAAGAACCTGAGTGTTTAATTGATACCAAAGCAGAGGAATCACTAAATGAAGGTCATTTATCTAACGACTCGGAAAATGAGGAATATGGCAATGAATTGGACTCTGACAATGATTCTCTAGCTTCGGATGATAGCAATTCTCCTTTATTTGTTCATAATTTTATCAAATCTAAACGTAATGTGATGGCTTTGATTGAGGCATATAAAAATCAACCCCAATTATGGAATCAAAAATATCCCCAGTTCGCTTTGAAAAAGAAACATGACAAATACCTGGAAGAGATACGCGAAGAATTAAAGAAACAAATGAATCTATCATTGACATGTTCTTTAATATCAGCAGTTATAACATATTTGTGTCGTAAATATCGACAAGATTTGAAAAGATTAAGATTAACGGAATTGCATGAAGAAAGACCAGATGATAAGAATCCACCTTCCTGGTTCTTCATGCACTTGGAATTCTTAAAACCAATTGTTGAAAAAACTTTAGTCAAGACTTTGAATTCTTCGCGAAGGCCCAACTTGGAGCAAGAACAAATTATACAAATGCTGGACATCTATAGGAGATTACCCTATCTTTGGAATACCAATcttattgaaaatgtttgtaaaaataAACGTCTTGAGGCTTTGGCTCAAATGCGCAACATGGTTGAAACTGAAATGCAGCTGAAACTTAGTGAAAATTTACTCAAAAACAATATACTCTTCTTTCACAATCATTTCACAAAACTGAAGCGTTTATTGATAATAGAAGGTAAAACTCCCAAAAATGATATCTACTACAAAAGTATGGAATTTCTACACGATCATGTGGGACCTTTCAAGTGCCATGAATGTTCCCAAGTATTTAAAAGTCCTTTAGCGTTTAAAGTTCATAGATCCCAACATGATGGATTGGCAGCCATAAGGTGCTCATTGTGCAATAAGGCCTACAATACTTCCGGTCCCTATATATCACATGCCAGAAGACATTGTGAAGATCTAAACGAGGAGTGCAAACAGTGCGGCAAAAAGTTTCTAATGGTCAGCGATTTGAAAATACACATGCGTTCTCATACCGGAGCCCAGCCCTATTGTTGTGAAATTTGTGGTGTTTCCTTTCGTCACAGTACCTCGCTGAATGTGCATCGAAGGCGTCATGAAAAACAATATTTACACAAATGTCCCATATGCTCCAAGGGTTTCTACAAGAAGGATAGAATGAATGATCACATAAGATCCCATAACAATATACGTGACTTTGCTTGCAAAATATGTGGCAAAGCTTTCAAGACTAGAAAAACCCTAAAACAACATGAGGTCATACACAATGATTCGCGGAATCATGTTTGTTCCTTGTGCGGTAAAGCATTTAAACTCAAAGTTGGCCTACTACAACATATGCGAACGCATGGGGGACATTTATGA
Protein Sequence: MGSDQQSNKKCGEILINIKKNNKTKSYTFKCEFCNTSCGQLKKFSLHLEEKHSVEILDEPMPFLKEAKVEEGNLSFSPETEVKIELMEEIEHDTIEKIDESKTYTVEYLDPLAAEAESIALKYQHESEEYEESVDDSTSSESENDYEGNKDKVTIKEGHATTNSEDTETPTSTNKLQCNVNETELTVCILKALEKQPALWDVKSRSHNKIIRQARFQDIANEINENLKIQIKWEFVRNHVKDLRTSYSYEYDKQKKGENYEMPWYSEHMGFLKENIEALIKHRFKKKKYKRLKTLDDAHIPIFIECYKNCEILWQVNNINFVLKTKKTETLKQMIQELKTKHNVDINLQDMQRSLDYINRLYSEDRGKQLQCEIEKKEFKPNSKYYHQLSFLSESQGPFLCCHCQEIITKFEKYHIHVSEHTKVVPFKCALCEVRFKKLSKYIVHAKRHLGLHKYHCDICGKGYQFRSELEWHVRQHTGEEPYLCEICGASFRSQNSYDNHIRRHEKRFRYECHICKHGFNHPHKLKSHVKAHLNIRDILCNVCGKGFTAMNHLRRHQQIHSGIKRYKCDVCEKAFAQDAGLRAHRKQHDAVEGPKNGGRKRRYNYDKPFHGYLWIFQTILYIKMNKYKDYIKCGEIYKSPSINPKEEEYVFKCLCYNEEHYINLEKFILPLCSNIINNDKLLYRDTSHCILAASDSQNEKPSEDVEIKYEDIAKVDVDPLNILKIGSLEDSKQLTEIKEEFPLEEPECLIDTKAEESLNEGHLSNDSENEEYGNELDSDNDSLASDDSNSPLFVHNFIKSKRNVMALIEAYKNQPQLWNQKYPQFALKKKHDKYLEEIREELKKQMNLSLTCSLISAVITYLCRKYRQDLKRLRLTELHEERPDDKNPPSWFFMHLEFLKPIVEKTLVKTLNSSRRPNLEQEQIIQMLDIYRRLPYLWNTNLIENVCKNKRLEALAQMRNMVETEMQLKLSENLLKNNILFFHNHFTKLKRLLIIEGKTPKNDIYYKSMEFLHDHVGPFKCHECSQVFKSPLAFKVHRSQHDGLAAIRCSLCNKAYNTSGPYISHARRHCEDLNEECKQCGKKFLMVSDLKIHMRSHTGAQPYCCEICGVSFRHSTSLNVHRRRHEKQYLHKCPICSKGFYKKDRMNDHIRSHNNIRDFACKICGKAFKTRKTLKQHEVIHNDSRNHVCSLCGKAFKLKVGLLQHMRTHGGHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -