Scal012368.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stomoxys calcitrans
Gene Symbol
-
Assembly
GCA_001015335.1
Location
NW:105565-127414[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 1.5 70 3.8 1.0 2 23 362 384 361 384 0.90
2 24 2.3e-06 0.00011 22.1 4.6 2 23 418 440 417 440 0.96
3 24 1.5 71 3.8 1.0 2 23 519 541 518 541 0.90
4 24 0.00011 0.0049 16.9 4.8 1 23 573 596 573 596 0.94
5 24 0.72 33 4.8 2.2 2 23 646 668 645 668 0.90
6 24 0.00056 0.026 14.6 0.4 3 23 710 731 708 731 0.93
7 24 0.0015 0.068 13.3 0.3 1 19 748 766 748 767 0.97
8 24 9e-05 0.0041 17.1 0.6 1 23 857 880 857 880 0.96
9 24 0.053 2.5 8.4 2.6 1 23 903 926 903 926 0.93
10 24 0.0055 0.25 11.5 2.9 1 23 973 996 973 996 0.96
11 24 0.0074 0.34 11.1 4.4 1 23 1006 1029 1006 1029 0.96
12 24 1.5 70 3.8 2.6 2 23 1103 1125 1102 1125 0.94
13 24 0.11 5.2 7.4 1.8 6 23 1135 1152 1135 1152 0.98
14 24 0.0018 0.082 13.1 1.5 1 23 1158 1181 1158 1181 0.98
15 24 8.3e-05 0.0038 17.2 1.7 1 23 1189 1212 1189 1212 0.95
16 24 3.3e-05 0.0015 18.5 1.1 1 23 1223 1246 1223 1246 0.97
17 24 0.04 1.9 8.8 0.6 2 23 1356 1378 1355 1378 0.93
18 24 0.00027 0.012 15.6 1.0 1 23 1411 1434 1411 1434 0.98
19 24 0.032 1.5 9.1 0.1 1 20 1443 1462 1443 1466 0.83
20 24 0.0031 0.14 12.3 1.8 1 23 1516 1539 1516 1539 0.95
21 24 0.0016 0.074 13.2 4.7 1 19 1588 1606 1588 1611 0.94
22 24 0.0023 0.1 12.7 1.8 1 19 1653 1671 1653 1672 0.96
23 24 2.5e-05 0.0011 18.9 0.7 1 23 1681 1703 1681 1703 0.96
24 24 0.27 12 6.2 1.2 3 23 1711 1732 1709 1732 0.95

Sequence Information

Coding Sequence
ATGTCACAAATATGCCGTTTATGTGTGAATACTTGCAATGATTCGAAAAGGCTTTACGATGAGAATGGCCGTGTTACGGAGTTGTATGATATCGTCCACAATTATTTCCATCCTAGGATTTTGAATTTGAGACAATGGAGAAATCTGAATAGCATTTGCATGATATGTTGGATACGCATATGCGATTTTCATAGCTTCGAGACCACGGTGACATTGGCTCAACTGAAATTGCTAGATCTGGATCAGAATTATGCAGCGGAAGCAGGTGGAGGAGGATGTGGGGGTGGCGAAGTGGAAGTAGGAGTAGGGGAGAGAATGGCAGTTGCCTCATCATCCCATGCTAACCAACAAGTGGAGCTGTTACCCTTGCATGCCATTAAAGAAGAACCTCCTTTAGTTACAAATGACTGGCATTCTGAGGTTTCACAATATTCTTTGGATACCGATGAACCTCAAATAATGACTGTTGTTACTCAGCAGCAGCTGCAGCAGTCTTTAATACGACCCTTGCATAGTGGGCCCAATTATGAGTTAGATAATTTTCCCTATCTACCAGAGCATCAGGCCACAAGACCAGTTGAAGAAGTATTGACTTTACCAAACTATCCAAGTCTAAGGAACAGTTTGCCAAAGCCTGTAGACATAAGAGAAAGACAAATAATGGTATTAGATTCctccgatgatgatgatggtgaagaAGAAGATTCCCAGGATATTAAAATAACTTCGGTTATGTCTCTAGCCCATCCCATAGTCTTTAAGCCCTTTGAGAGCAAAGAACCACCTAGAGTAAACAGAAATGAAGAAGTAACAGAGGCGCACCAAGCAAATTCAAATAGGGAAGAAAGGCAATTACAGGCAAATGCCAGGGTGTTGATAACAGATTGTAATATttccaataacaacaacaaacaagccCAGCAGCAGCATAAGAAGGAGCAACAGCAGCAGTATCGTCTCGAAAGCGCCTCTCTGGAATCTGATCGTGAATTCGCAACCCCAGAACCCTTAGAATCTCAACCTCGCTTGAGAAAAACCCAAGAGGATCAAAACTATATCATATCCCAATGGAGGCCTACGCTAAAATGTGAATTATGCTCGGAGTCTTTTAACCTTTTCTCAGTCTTCGAAGAACATTTCCGTTTTAGCCATCCCAAAAATATTTGTCATGTCTTTTGCTGTGATCGCAAATACGTGGGGGCCATAGAAATGAGGCAACATGCCCGCAAACATCTCAATCCCAAATCCTGCGTTTGTGATTTATGTGGCAAATGCTTTGCCCAACGGTCTTCGCTTAAGAAACACATGCTCACGCAACATTTGCGATTTAAGATACCCCAAGGTAAGATGCCCATGCAACGTAAACGCCAAAAGAAGagatttaaaaagaaattggcctacaccaaaaagaaaatttccaaaaatcccTTAATAAGAAGAAAGAAGAATTTGTCGGAGGAcccagaagtcattgtgccacaGTCATCAGAAGCTCTGGAGCCTTTGAACAATGTCCTGGATGACCTTATGACCCAATGGCAGCCCCTTGGCATAAAATGTGAATTATGCTCTAAGATTTGTGGCAAATATTCCCTACTTTCTGAACATTTTCTGGAACTACACCCCCAAGAGGCTTGCCATATTTTTTGTTGTGGTCGTAGAATCTTTAGATCACAATTGGAGAGTCATGCCCGCAAGCATCTCAATCCCAATGTCTTCTATTGCGATTATTGTGATAGCTGTTTCACCCAGTTAAGCAATTTGAAGCGTCACATATTTAATAGGCATACCAAGCGTAAGGATTGTTCCAAGAGAAGGGAAAAACCCTTGgctattgaaaaaaataaaccagAAAAGCCAGCTGAAGTAGAGCAGAAGCAGTTATCAAGCGCCCGTAACATAGACGATCTCATAGACAAATGGAAGCCCATCCTCAAATGTGAGCTGTGTACTGAAATATGTCCCAAATTCTCTCATCTGGAGCAGCATTTTATACAGGCGCACTCCTCCCAGGAGCTGTTCATTAGCTGTTGCAAACGAAAATTCTCAATACGCTCAAAGATTGAGCGGCATGCCAAGCATCATTTGAGTGCATCGGGTAAAGGAGGCGTTCGCTCTCATCAGAACTGTGAAATATGCTCCAAGAGTTTTTCCACCAGAAGAGGTTTGCTCATACactacaatgccatgcattttGGTCATGGCGGCGATGAGGCGAATCATGCCCAGGCCTTGGCCCTTTACAACTGCAAGTTATGCGGCAAAGCCTATAGGGATGCCAAAGCCTTGTATCGACACAATTGGCTGATGCACAAAAAggatttgaaattgaaaatcatAGGACGCAAGCTGATACAAAAGGTTAAAACAAAAAGgagaaagaaaattaaaaagaccaacaaaagaaaaaagcgAGAGGTGGAGGATGAGGAGGAAGATGATAGTGAGGATAATCTGCCTTTGAAAAAGCCCAAAGAGAAAGAACAGCTTAACCACCAGCAAGCAGAAGCCATAGATATTGAGCCAGAGCCTGAGCAAAGGGAAGAGGAAGACGAGCAGCCCCAATTCTTTGAATGTCAAAAATGCCCCAAAAAATTCATCACCAAAAAGGGTCTGCTCATACACATATCAGTCAAGCACTTGCAGGCAGAAGACCAAAAGTCCTCATCAGCCCTGCCCGAGGAGGATGAAAGCAATATCGAAAACTATGAATGTGAAAAATGCAGCAAAAAATTTCTCACCAGGAAGGGGCTGCTGAAACATTTGAGCTTTAAACATTTACACAATACAGTAGATGAATCAGCAGTAGAAGaaggacaacaacaacaaagcccAAGTTCCCTTAAGGAAAATTCAGCGGATGTGTCATCCTTGGCCGAAAATGGGGATGAAAGTGTGGTAGCAGAAAATGAGGTCTTTGAGTGTGAAATATGCCATAAAAAGTTTTTCACCAACAAAGGCATGATCATACACACCAAATTGAAGCATTTGGATGCCTTTAGATCCTCGGCCCTTTACAAATGCAATCTATGTGACAAGACCTGTAGAAGTGCCCGTAAGCTGTACCTGCATAAACTTAAACTACACAAGCTAAGGCTGAAAATCAACAATGGCCAAGTGTTAAAGAAAAATCTCAAGGCCCCCAAAATGGCAGAATCTATAACCCCCAAATCCCCCATCGAAGAAGGCCTAGACAACGACAACATTTCAAAAGCAACTCCTTTCAATATCAGCGATAAACacattggcaaaaaaaaatggcgTCAACTATTTGATGATCTGGTGGCCAAATGGCGACCCCAACTACATTGTGAGCTATGTTCGCAGGCCTGTGATAATTTTTCCCTTTTGGAATTGCATTACCAGCAACAGCATATTGGCGAAACCGCCTACGTTATGTGCTGcaatcgtaaatttgtctcccGAACTCACCTGCGGGAGCATGTCATGTATCATCTGCAACCCAGTGTATTCCAGTGCAACGTATGTGGGGCCAGCTGCAGTAGTCATGGAGTCCTTATACAACATCAGCAAAAATGGCATCCTGAATTTGTGGAGTTTTCACACAACTGCCAGTTGTGTGGCAAAACTTTTGAGACCCAAAAAGGTTTGTCCACCCACATGACGGTGATGCATAATGGTGAAATCAGTAACAAGAAGTCCAAATACAAATGCAGCATATGCCATCGAGTATATGGCACCTGGGAGTCTTTGTGGAAACATAAAAGACTTGTTCACAAGAAGGATTTGAAATTGAAGATTGTGAATGGGCAGGTggtgaaaaagagaaaaatgaaaaacaaaatcaagaaaatggaggaaacagaagaagaagaagaaaaagaaccaCAAAATTCGCAGCAAGCACCGCAATCGGAGGATGAAGAAGACACCAGTTGGCTAGTGCCTGAAACTGAAACTGTAGAGCCCCCGTTTGACAATGAATTTGATGATGATCATGACTTGTCAACCACCAGCTCTACCACCAATAGTGTCCCTTATGTGGGTCTCAAGCAATGGTTAGAAAATCTAGATGATCTAATTATCAAATGGAAACCCTTGCTCAAATGTGAGCTATGCTTGGAGTCATTTCCCAAATTTAGCCAATTGCAGGAGCATTTCCAACTACAACATGGCgaagagaaattttttatgaattgcTGCAAtcgcaaatttttgaaaaggcCTCGCATACGCGATCATGCCATGTTTCATCTGGATCCCTCTACCTTCAAATGTGAAACATGTGGCTTGTGTTTCGAAGCTAGGGAAACTCTAGCAAATCACATGAATGTTAAGCATCCGAAAGTGGTTGATCATCCCGCCTATGCCTGTGCTAAATGTGGCAAGGGTTTCACCACCTCCAAGGGGGCGCTGATACATGAAGCCTTATCCCATTGTCATTTGATGGAGAGTCCTCAAGCACCAAACACTGGTAAAAGCATCATTCCAAACCCATCAACTgctgcagctgctgctgctgctcctcTCCCACCTCCACTTCCAGCAGCAGGGGCTAGCCCTGTCGCCACTTCTCCAGTGTTGTATCCTTGCAAACAATGTGACAAAGTTTATGAGAATTACAAATCCTTATATACCCACAAATATCGAATACACAACAAGCCTGCCACCTCCTCTGCTACGAGCAGCGAACTGGAAACTGAAGCCAGTCCTAGAGaagcaaatttcaataaaatcaataCTACGCCACCACCAACACCTTCACCTTCGGCTGCTGCCAGCATTGACTCAACTGAGCTACATCAGTGCCCGCATTGCGATAAATCTTATACCAATAGCAACTCTTTGGCTGTACACAAATGGCGTTGCCATAGAACGACCACAGTGCCTGGTATCAATAGGGGGACAAATGAAAGTGCAACTCAGCAACCGCCGTTAGAGCAACAGCCCCAGCAGCAGCAACCACTTCCCGAAAAGCAACAGCAGCCGCCTCTCTTCAAATGCACCGAATGTGGAAAAGTttgtgacacttccaaatccTTATACAGCCACGTCTGGTATTATCACTCGCATAACGAATTCAAATGCAAGGTCTGTGGCAAAATCTTTAGACGGTTTGCCCAACTCAAAGAGCACAGTGCTGTGCATACTGGCAAAAACGCCTATGGCTGTATGTTCTGTCCAAAGACTTTTAAATATTACACTGCCGTATACCTGCATCGCAAGAAACAACATCCCCATGAGATGTCAAAGGAGTactatagaaaatATTGtcgttttaattttcattttataattttttgttttatttttaaccctttacaatttattccaaaattattttttttttttgaagtaaaaTTCACCATGTCATCTTTTAAAATCTGTTGCTTGTGCCTTGCTGAGTGCTCGGAATACGAAAGCCTTTATCAAAAGGGTGGCAAGGAAACGCGCCTCTATGAAATGGCCTACAACATCTTTCATCCATATATTTTAAATATGGAAGTATTGCAGAAACTCGATGTCATATGTTTAGAATGCTGGTATCATATTCTGGATTTTGAGGACTTTCGTATGAACATCATCAAGGCTCAATTTGGTGGCCAAGAAACCAACGATGTGATCTACGAGAAGAAACTTGAGGATATCTATGGAATATGTAATGAGGATAACAATGATTATAATGTTAGTAATAATAATAACGAACAATGCCTAATGGAAATGCGTATCAATGTCATAAAAGAGGCCAATAATCCAAttgatttggaaaattttcaaatcggCAATATCGAAGATAAGCATGAAAAAGTGCCACAATTAAGATGGCATAATCCTACGCCAAAGAAAGATAAAATCTACCCATCGATACCGCTTGAGCCAGGATGCCTTGCTAAAAAAACCATAGAGTTTCTGCAAAGTCTTTGTGACGAAATGAATGAACCTCAAACCCCAGCGGAAACTTCTAGTAATAAACTCGCCAGAACTTCTAATAATAAGCCCGCCATTAGCAATAAGAGTAAAACAAAAGAGAAATCCTCGGATCAAAAAGGCAACAACGTCTTTCCCGATGAGCATCCGGAATATGAGCACATAAAAAATCGTTGTAAGGAAATAAGGCAATTGAATGATCACTTAAAAGCCGAAGGAGTTCTTTTTCTGGAAAGTTTACTACTAAAttctgatgatgacgatgatggaaACTCATCTATGACACCATGGCCTTCAAATGTTTCATGTAAAACTCATAATGatctggagaagattataattattgacgatgatgatgaagaaaaTGATATAGTTGTTGATGATATCAAGGAAGAAACTGACCAGGATCTGGAAATAATTAGCATATATTCCAATTTAGAACCCTTTGAAGGAAATGACTGCCCTTCGCCAAAAGTTTTAGCTTCTGGTATATATCAAGTTTCTCAGTAA
Protein Sequence
MSQICRLCVNTCNDSKRLYDENGRVTELYDIVHNYFHPRILNLRQWRNLNSICMICWIRICDFHSFETTVTLAQLKLLDLDQNYAAEAGGGGCGGGEVEVGVGERMAVASSSHANQQVELLPLHAIKEEPPLVTNDWHSEVSQYSLDTDEPQIMTVVTQQQLQQSLIRPLHSGPNYELDNFPYLPEHQATRPVEEVLTLPNYPSLRNSLPKPVDIRERQIMVLDSSDDDDGEEEDSQDIKITSVMSLAHPIVFKPFESKEPPRVNRNEEVTEAHQANSNREERQLQANARVLITDCNISNNNNKQAQQQHKKEQQQQYRLESASLESDREFATPEPLESQPRLRKTQEDQNYIISQWRPTLKCELCSESFNLFSVFEEHFRFSHPKNICHVFCCDRKYVGAIEMRQHARKHLNPKSCVCDLCGKCFAQRSSLKKHMLTQHLRFKIPQGKMPMQRKRQKKRFKKKLAYTKKKISKNPLIRRKKNLSEDPEVIVPQSSEALEPLNNVLDDLMTQWQPLGIKCELCSKICGKYSLLSEHFLELHPQEACHIFCCGRRIFRSQLESHARKHLNPNVFYCDYCDSCFTQLSNLKRHIFNRHTKRKDCSKRREKPLAIEKNKPEKPAEVEQKQLSSARNIDDLIDKWKPILKCELCTEICPKFSHLEQHFIQAHSSQELFISCCKRKFSIRSKIERHAKHHLSASGKGGVRSHQNCEICSKSFSTRRGLLIHYNAMHFGHGGDEANHAQALALYNCKLCGKAYRDAKALYRHNWLMHKKDLKLKIIGRKLIQKVKTKRRKKIKKTNKRKKREVEDEEEDDSEDNLPLKKPKEKEQLNHQQAEAIDIEPEPEQREEEDEQPQFFECQKCPKKFITKKGLLIHISVKHLQAEDQKSSSALPEEDESNIENYECEKCSKKFLTRKGLLKHLSFKHLHNTVDESAVEEGQQQQSPSSLKENSADVSSLAENGDESVVAENEVFECEICHKKFFTNKGMIIHTKLKHLDAFRSSALYKCNLCDKTCRSARKLYLHKLKLHKLRLKINNGQVLKKNLKAPKMAESITPKSPIEEGLDNDNISKATPFNISDKHIGKKKWRQLFDDLVAKWRPQLHCELCSQACDNFSLLELHYQQQHIGETAYVMCCNRKFVSRTHLREHVMYHLQPSVFQCNVCGASCSSHGVLIQHQQKWHPEFVEFSHNCQLCGKTFETQKGLSTHMTVMHNGEISNKKSKYKCSICHRVYGTWESLWKHKRLVHKKDLKLKIVNGQVVKKRKMKNKIKKMEETEEEEEKEPQNSQQAPQSEDEEDTSWLVPETETVEPPFDNEFDDDHDLSTTSSTTNSVPYVGLKQWLENLDDLIIKWKPLLKCELCLESFPKFSQLQEHFQLQHGEEKFFMNCCNRKFLKRPRIRDHAMFHLDPSTFKCETCGLCFEARETLANHMNVKHPKVVDHPAYACAKCGKGFTTSKGALIHEALSHCHLMESPQAPNTGKSIIPNPSTAAAAAAAPLPPPLPAAGASPVATSPVLYPCKQCDKVYENYKSLYTHKYRIHNKPATSSATSSELETEASPREANFNKINTTPPPTPSPSAAASIDSTELHQCPHCDKSYTNSNSLAVHKWRCHRTTTVPGINRGTNESATQQPPLEQQPQQQQPLPEKQQQPPLFKCTECGKVCDTSKSLYSHVWYYHSHNEFKCKVCGKIFRRFAQLKEHSAVHTGKNAYGCMFCPKTFKYYTAVYLHRKKQHPHEMSKEYYRKYCRFNFHFIIFCFIFNPLQFIPKLFFFFEVKFTMSSFKICCLCLAECSEYESLYQKGGKETRLYEMAYNIFHPYILNMEVLQKLDVICLECWYHILDFEDFRMNIIKAQFGGQETNDVIYEKKLEDIYGICNEDNNDYNVSNNNNEQCLMEMRINVIKEANNPIDLENFQIGNIEDKHEKVPQLRWHNPTPKKDKIYPSIPLEPGCLAKKTIEFLQSLCDEMNEPQTPAETSSNKLARTSNNKPAISNKSKTKEKSSDQKGNNVFPDEHPEYEHIKNRCKEIRQLNDHLKAEGVLFLESLLLNSDDDDDGNSSMTPWPSNVSCKTHNDLEKIIIIDDDDEENDIVVDDIKEETDQDLEIISIYSNLEPFEGNDCPSPKVLASGIYQVSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-