Scal000596.1
Basic Information
- Insect
- Stomoxys calcitrans
- Gene Symbol
- -
- Assembly
- GCA_001015335.1
- Location
- NW:2009641-2013073[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00044 0.02 14.9 3.2 1 23 178 200 178 201 0.95 2 12 0.023 1.1 9.5 2.2 3 20 261 278 260 280 0.94 3 12 0.0059 0.27 11.4 0.8 1 19 371 389 371 393 0.94 4 12 4.6e-05 0.0021 18.0 4.3 1 23 399 421 399 421 0.97 5 12 6e-06 0.00028 20.8 0.6 2 23 437 458 436 458 0.97 6 12 0.00013 0.006 16.6 0.9 1 23 467 490 467 490 0.97 7 12 2.4e-05 0.0011 18.9 0.3 1 23 496 518 496 518 0.97 8 12 5e-06 0.00023 21.1 1.2 2 23 522 543 521 543 0.97 9 12 2.5e-05 0.0011 18.9 2.5 1 23 549 571 549 571 0.95 10 12 0.0033 0.15 12.2 7.0 1 23 577 599 577 599 0.97 11 12 1.4e-05 0.00063 19.7 0.5 1 23 605 627 605 627 0.95 12 12 1.1e-05 0.00051 20.0 1.3 2 23 634 655 633 655 0.98
Sequence Information
- Coding Sequence
- ATGGATGCAGAGGAAAAAGTTACCGACATCTCCTTGGAATATGGAATAATGTCCACGGATATATTCTCTATGTGTCGCACATGCATggcagcaaacaaaaaatactaCCAAATCTTTGATTATGTGGATGAAAGCCAGAGAATTTTGGAAATGTTGCATAAAATTGTGCCACAAATCAAAGTCAAGGAAGAGGATGACATTGAGTTCTCTAATTTAATCTGCGAGGAATGTGTCGACAAATTGGTGACCAGTTATAAGTTTCAAAAATTAAGCATTGAGACCTATAATCAACTACGTCGCTTGTTGCGGGATTCTGTTGAAAAGGAGTTTGAAGCTACCTCCCTGGAAGAGGAATGTACAGAGATGAAAATCGAAATATTTGATTTCGAGGCTAATGGAGAAATGCAAAATGATTCTAAAGCGACAATAGGTGTAAACAAACCCGAGATCCAagaaagcaacaacaaccaaaacaaaGACTATACGTCGCTGACAATAACAGATAGAAACAATTTAAGTacaagaaaaaagttttcatgCAACAAATGTGAAAAAGTTTACGATCGATTATCCCGATTGGAACAACACACACTTAAACACCATTATGCTAATGATGATAACaaaatagaagaaaatattGATATCGAAATTTCACTGGAGGAATTTAAAAACGAAGACGGTGCAGATCTAGATAGGGATGATCAACTTTTAAACACAAGcgatgaaaataaaataaaaattcgatcATCAATGGAATCGGAAACTTATAAagaaCCATTTTGTACACTATgtgaaagaaattttaataatttttccgatttggaatCACATCGCTGCGATCCAGAAAGAATATCAGAAgacatttatgaaaatcaagAAGAAGAATATATTGAAGACCATGATGGTAGGGAGCATGCAGAGGAAGGAGAAGACGAACAGGAGATGGACAACAATCCCACATCCTCGGAGGAATATGAGCATTTGGAAGGTAGCAGAGCATCGTGCGATAGCGaagaacaatttttaaatttagaTGCTGAGATTCCGGAATACAAAATTACTGCCGAAGCAATAGAAACAGACAAACCCCAGACAGGCAAAAAGCCATCATATCCCTGTGAGGTTTGCGGCAAGATATTTAATTGTCCTTCCCGCCTGAAACGTCATAGCCCAGTTCATTCTCTGGATAAGCCATACTCTTGCGAAATATGTAAACGTCGTTTTTCCACATCACATTATCTGAAGATACATAAGAATTTAcataaaatcagaaaaaatcgaACGGAATCGATACCTCCAGAAGGTCTACAGTGTTCGGATTGTCCAAAACGCTTTAAAAATCGCAATGCATTAGCATCCCATCGTCAAGTACATACGCGCAACTCAGCCGTCGCTAATTTCACTTGCGATATGTGCCAACGAGCTTTTGTTACCGTAAAAACACTCACCGAtcacattaaaaataaacatcccgatgcaaaaaaatttacttgtGAAGAATGTGGCAAATCGTTTATCCTGCGTGAAAGACTTTTACGGCATTTAAATGCTCACAAAGATCTAACGTGTCATGTTTGTGAAAAGACATTCACTTCCGAGCCCACACTTAAAGAACACATGAACATTCATACAGGAGAAAATCCTTATCTGTGTTCATTATGCGGCAGGGCATTTAAATATCACAGTAGCTTAAGGAAACATGTGGAGCGTCATTCTGGTATAAGTCCACACCATTGTCCGGAATGTCCCAGAAGTTTTAAATGCCGCACTGATCTAAACAAACATATCAAAAATCATCTGGGTATAAAATCGCATATATGTGATATATGTGGCACTGGATTTACCAGATCCTGGAACTTGGAACAGCACAAACTATTGCATAAGGGTAAAAAACGGCAGAAATGCGAAGACTGCCCTATGACgtTTATATCGACTATTCAATTTAAGCGTCACATGAAAACTCACCTCGATGAGGGCATCTCATCAACTACTTAA
- Protein Sequence
- MDAEEKVTDISLEYGIMSTDIFSMCRTCMAANKKYYQIFDYVDESQRILEMLHKIVPQIKVKEEDDIEFSNLICEECVDKLVTSYKFQKLSIETYNQLRRLLRDSVEKEFEATSLEEECTEMKIEIFDFEANGEMQNDSKATIGVNKPEIQESNNNQNKDYTSLTITDRNNLSTRKKFSCNKCEKVYDRLSRLEQHTLKHHYANDDNKIEENIDIEISLEEFKNEDGADLDRDDQLLNTSDENKIKIRSSMESETYKEPFCTLCERNFNNFSDLESHRCDPERISEDIYENQEEEYIEDHDGREHAEEGEDEQEMDNNPTSSEEYEHLEGSRASCDSEEQFLNLDAEIPEYKITAEAIETDKPQTGKKPSYPCEVCGKIFNCPSRLKRHSPVHSLDKPYSCEICKRRFSTSHYLKIHKNLHKIRKNRTESIPPEGLQCSDCPKRFKNRNALASHRQVHTRNSAVANFTCDMCQRAFVTVKTLTDHIKNKHPDAKKFTCEECGKSFILRERLLRHLNAHKDLTCHVCEKTFTSEPTLKEHMNIHTGENPYLCSLCGRAFKYHSSLRKHVERHSGISPHHCPECPRSFKCRTDLNKHIKNHLGIKSHICDICGTGFTRSWNLEQHKLLHKGKKRQKCEDCPMTFISTIQFKRHMKTHLDEGISSTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -