Scal000759.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stomoxys calcitrans
Gene Symbol
B0310.2
Assembly
GCA_001015335.1
Location
NW:590993-613562[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.061 2.8 8.2 1.8 3 23 254 275 252 275 0.93
2 28 0.001 0.047 13.8 3.2 1 23 281 304 281 304 0.95
3 28 5.2 2.4e+02 2.1 1.4 1 23 365 388 365 388 0.89
4 28 0.00082 0.038 14.1 5.0 1 23 394 417 394 417 0.97
5 28 0.00065 0.03 14.4 0.3 2 23 448 469 447 469 0.96
6 28 0.018 0.83 9.9 1.5 1 23 546 569 546 569 0.96
7 28 0.28 13 6.1 0.6 2 23 577 598 576 598 0.95
8 28 0.00011 0.0052 16.8 1.5 2 23 640 661 639 661 0.97
9 28 0.18 8.5 6.7 0.5 2 23 673 694 672 694 0.95
10 28 0.027 1.2 9.3 3.2 1 23 766 789 766 789 0.93
11 28 0.00019 0.0089 16.1 0.4 1 20 796 815 796 817 0.94
12 28 0.11 5 7.4 0.3 2 23 829 851 828 851 0.93
13 28 0.00033 0.015 15.4 0.4 2 23 866 887 865 887 0.97
14 28 1.3e-06 6.1e-05 22.9 1.9 3 23 895 915 893 915 0.98
15 28 9 4.2e+02 1.4 1.7 2 23 947 968 946 968 0.82
16 28 2.6 1.2e+02 3.1 2.3 1 23 1068 1092 1068 1092 0.94
17 28 0.39 18 5.7 1.6 1 23 1129 1152 1129 1152 0.94
18 28 0.14 6.3 7.1 4.1 3 23 1169 1190 1168 1190 0.93
19 28 0.013 0.62 10.3 0.5 3 23 1199 1220 1198 1220 0.95
20 28 0.34 16 5.9 0.0 2 19 1246 1263 1245 1265 0.94
21 28 0.0085 0.39 10.9 5.1 1 23 1323 1346 1323 1346 0.98
22 28 0.038 1.7 8.9 1.1 1 23 1383 1406 1383 1406 0.96
23 28 0.13 5.9 7.2 6.0 1 23 1434 1457 1434 1457 0.97
24 28 7.2e-07 3.3e-05 23.7 0.6 2 23 1484 1505 1483 1505 0.95
25 28 2.1e-06 9.8e-05 22.2 0.9 1 23 1511 1533 1511 1533 0.99
26 28 8.1e-08 3.8e-06 26.7 3.5 1 23 1539 1561 1539 1561 0.99
27 28 7.4e-07 3.4e-05 23.7 4.5 1 23 1567 1589 1567 1589 0.99
28 28 0.015 0.67 10.2 0.6 1 22 1595 1616 1595 1619 0.91

Sequence Information

Coding Sequence
ATGAATCGAATTTGCCGGACATGTTTTGACCCTGGAGAAAAACTTGTTGGATTGTGTGATATTGTTGTGGAATCTAAAAGTTTTCTGGATTTATTAAGGGAAATAGCAAATTTACAGATTTCAATAGACGACCCGTTGCCGAAAACTATTTGCAATTTATGCTCTACTAGCGTCAAAAACGCTTATGAATTTGTAACAAGGGCGCATGaggcaaatgaaaagtatttaaaattattGGCTATTGATGGTGGGGATGCCGACCCTCTGGATGAAAACAATCTGTTATCGGATTGTTTGGAGGAATCAGCTATAGACATACCTGTTGCACAGTATTTAGGTGATATCAAATTAGAAGTTGTTGGAGACCAATATGGCATGCTGTTGTTGGATAAAGAGCCTCCTGGATCTAGTTGTCTCACAAAAGACGACACGGATAAAGGGAGTGATGACGATGAAATGCCTCTGACTGCCAgcaataaaactttaaaaaccGACCAAACTCTGTACGATAGTTGCGCCGATGATACATTCGGTTACGACGAAGAAAGATTCTTGAATGCTAGCGAAGATGGCAATGCAAATGAGTATGAAGACGATGACGATTCCGCATACAATCAGTCATCCTCTGAAGGAAGTTACCAACcacgtaaaaaaattaaaaaggaatCAGAAGGAGAAAAGACGGTTAAAAAGCGCAGGGTTAGGCGGCAGCTTCCGccatattttacaaaaattaaggaTATAGGCGATAGATATGGTTGCTTCATGTGCGACAAAACCTTCTCACAGCGTAAGGATTGTGGGCGACATATTGCTTCAATACATTTGAAAGAAAGTACATTCCTCTGTGAATATTGTCCAGAATACTTTAATCGGAAAGATAAAGTGCGACATCATATGAAACGCATGCATCCCGATAAACCAAGGGCACAGGAAATAGAAGAGATCTCTCAAAACCAGCAAAACAAAGATGAATCGTCCTCGGAAGATGAGACGAGCCAAAAGCCTAACGCGGACAATAACACAGGGAAACGTAGAGTTGGGCGTCGGGCTCCGGAATACTTTAACAAAATAAGACAAGTTAATGATCGATTTCAATGTATTTTGTGTGAAAAGACATTTTCATTGCGCAAAGACTGTGGCCGCCACATTGCCTCTATACATTTACGAGAAACTACATTCTCCTGCGAATATTGTGGCCAACATTTTGGGCGGAAAGATAAAGTGCGACATCATATAAAGCGGATGCACTCCGATAATTGCGTATATCCAAAGGGCAAGCGCAGAGAATGGATGTTCGGCGACCGCCTTTACAGTAAGCCTACAAGTTGGCTACTTGTGGAATGTAAACTTTGCAATATTCAATTCAGCACAACCAAAGAGTTGAGGGCACATCTGGGAACTCACAGATGCGTTGATTCCCTGATTCATTTGAAGATGGATAGTGATATTGTGACACATTTATTCCCCAATGTTATTAGTTTGCTGAGTGTCAAGGAACATATTTGCAAAGATATCGAAGACGGAAACTGGTTCAAGTACTATGCTGTGTTGAATGAACATTCATTTGAAATGTCCATAAGTGATACAGAAGTCGAGGATCTGTATGCGGAAAATAGTGCCGATTATCCTAACTACAAATGTGAACTATGTGGATCAGCATTCTGCTTTCAGTATGAAGCATTTAACCATTTAAAGGAAGCGCACGGAAGCGACGAAATGCCTTCTAAGTGTGGTCTCTGTAAACTGGAATTCATATCATCGAAAATGTTTGATCGACACTCCGAGGTGCACTGTCGCAACCGAAATAAGGTGTTATTGTGTACCAGATGTCCGGCTAAATTTGTTTGGCCGGACAATATGAGAAATCATAATTGTGCTACCAAGCCGGAAGTTGTCATCGAAAGGGAAATCCTAAAATGTCATATATGTGGTCGACCATTTGAGGTGAAAACAAAATTGCTTAAACATTTAGAAAGACACAATCTTGAGAACAATCCAACCAAACCAATAATTCGATGTGGCCTCTGTGTACAATCCTTTGACAAACTTAAATTTCTTCGTGAGCATATAACACAGCATTCAGATGGTGTGACAGGAATAGACTTTCAAAATGGAATTTACTTCAAAAGATTTGAACGTTCGAAGACTCATGATCGCGCCCTTTTACAACAAGAAATACACAATGCTTTTGAAAAGTCGCAAATTAGTCGTCTTTATCGGGCCATCGACAAGGACGGCATGGAAATGGATATACATGATTCGGATAGTGGAACAGAAGAAGAGACATTGACCTACAAGTGTGAACTATGTTTTATGTTGTTTAACCGGAGGAAGCACTTGCTCAACCACCAATTCGAAGCCCACAGCGACGTTCCCCTTCCATATGCATGCAAAGACTGCACGAAACAGTTTGTCAGTCAGGATTTACTACAGCAACATTTGTACAGAGACTGTTGGAATGAACATCGACGAGTGGCCCAACAATGCGAGTACTGTAATGCTCGATTCATATGGCCCAACAATTTGCTAAAACACAAAGATATAAAGcaTAAACATCAAAAGCAACCTAGGCCAAAACGTGCTAGCACTTTGAAGTGCGAATATTGCGAAAAAGTGTTTATATGGCCCAAAGACTTGGTGCGACATCGAAAAACTCACACAGAGGGTAAAAAATTCGGTTGTCCACATTGCGatcgcaaatttcagcggaagGATAATCTCCTGGCTCACATACGTACTCATGACCCGGATGGTATAACACTGCTTCCCAACTCTAGCAAGGCTATCAACCACATCTTACCACACCTGACCAATCCACATGGATGTAAAAGAATCAAATGCATGATATGTTATTCGGAGCACAATCGCATATACGATTTACGTTCTCATTTGCGCTCTCACCAATActcaataaattttgaaaaacgcaAAGAGTCAGAGAGCATTGCTTTTATATCAAAGCAGCTGTATCCTCAAGTGCTGGCGATGGACGAAGagcatttgacaaaaaaaatttcatcggatATCATTGCCGAACGTAGTTTGGAGCGTTTTTACTCGATAACCAATGAACATGGTTTTGAGGTTAGTTTGGACAGTTCGGAAACTGAAAGCGATTCGGATGATGAGAAAGCGGAGAAGAGCGTTGATGCCGACAATCCGGAAAATAGCATAAAATTGGTCAAATCTAGACGCACATATACCTGTGATTTGTGTCCGCAAATGACATTCGATCGCAAATACAAGGTCTATGAACATCATAACAGTTTGCACAAGTGGGAAGATGGTCGACACTTTTGCCTACATTGCAATGCAAGATTTTTGTCGTCACACATGTTGGAATTGCACTACAAAAATCAATgcaaaaatacgaaaaaacGTCACTTTTGTCGGCAGTGTCCACTGCGCTTTATGTGGAAAAATAACCTTAAGACTCACATCGCAATGGAACATCCACAGTATCAGCCAAaagagGTCGAGCATCATGCATCCTTCAAAATCTGCTATTTTTGCCAGAGTAAATTCTGTACCAACAAAGAGCTCAGACAGCACATGACTTTAAACCACGCCACAGAAACAGAGCTGCGCTACTGTTTCCTGTGTCCGAAAACCTACTACAAAGTGGACCAGCTTAATGAACACTTATTGCGCCAACATAATATCCCTTCCGACTACGTGAGCTCTATCGAAAGTATAACACAATCATTGTGTTCCAATGGAAAGAAGGAGATTCAATGCAAAATATGTGCTCTACAGTTCCCAACAATGTCTGAGCTGGCTGTTCATTTCTCACCTACAAATCCGCAGAATATGTGCTCAGTGGAGCACTCTATAGCCAACTACTCCATAACAAACCAAAAAGGTTTCGAATTAAACCTGGTGCTGGATTCGGAGACTGAGTCGGAGGAGACCTCTACGAAGGGGGGAGACCAAAAGGAAAATCCAACGAAAACTTGCAAGCCCTATACGTGTTCCATATGCAATGTATCATGTGATCGTAAATTCCAAATGGTTCACCATCAACGGTCTATGCACAGCTATGAACACTTGAATCTAAAATgcgaaaattgtatttttaaaacATCTTGCGAGAAACTGTTGCAGTACCATATGGCGACCCAATGTTTTAATGTGGAGAAACAATTTCAGTGCGACATTTGTAAATTTAAATTCATGTGGGAGGAGAATTTGCAAAACCACATTGCCATTTGTCATCAACCGTCATCAGCGGCGGACGATGATCACGCCGACCTAAAGCCTCCGGAATGGATAGACAACAGAAACGACACCAACATTTTTGAGTGCATGGAATGTCATCGACGTTATAATCGCAGAGATCGCTATAAAGcacatttcaaaaaattccaTAGTGACCTTTCTAATCTAGATGAATCGCTAAAGATAAAGGAGCGTGCAAAAGGATTACCAAGCAAGACCAAGAATTTCTTGTGTGCATTTTGTGGTGTTTCTTTCTCGAACAACTCAAATTTGACCGTACACATGCGGCGACACACTGGCGAGAAGCCTTTCAAATGCGATCTTTGTCAAATGGCGTTCCCTCGCTCGTCCGACCTGCAGTCTCACCGTCGCACCCATACTGGCGAAAGACCGTATAAATGCGCACATTGCGACAAATCATTTTCACGCCAATACAAGCTCAATGTCCATATGCGTATCCATACTGGCGAGCGGCCGTACACGTGCACGTACTGCGGAAAAAGTTTTACGCAATCCAATGATTTGACGCTGCACCATCGACGTCATACTGGCGAACGGCCTTACGTATGTGACATATGCGGCGAAGGCTTCATTTGTGCTACATCCTTGAAACAGCACAGAAATTCGAAAGGCCACTTGGAGCATGTCGCAGACACCGAAGAAGATCGAGTCAAGCAATTAACTCattttgaaatgaatttttaa
Protein Sequence
MNRICRTCFDPGEKLVGLCDIVVESKSFLDLLREIANLQISIDDPLPKTICNLCSTSVKNAYEFVTRAHEANEKYLKLLAIDGGDADPLDENNLLSDCLEESAIDIPVAQYLGDIKLEVVGDQYGMLLLDKEPPGSSCLTKDDTDKGSDDDEMPLTASNKTLKTDQTLYDSCADDTFGYDEERFLNASEDGNANEYEDDDDSAYNQSSSEGSYQPRKKIKKESEGEKTVKKRRVRRQLPPYFTKIKDIGDRYGCFMCDKTFSQRKDCGRHIASIHLKESTFLCEYCPEYFNRKDKVRHHMKRMHPDKPRAQEIEEISQNQQNKDESSSEDETSQKPNADNNTGKRRVGRRAPEYFNKIRQVNDRFQCILCEKTFSLRKDCGRHIASIHLRETTFSCEYCGQHFGRKDKVRHHIKRMHSDNCVYPKGKRREWMFGDRLYSKPTSWLLVECKLCNIQFSTTKELRAHLGTHRCVDSLIHLKMDSDIVTHLFPNVISLLSVKEHICKDIEDGNWFKYYAVLNEHSFEMSISDTEVEDLYAENSADYPNYKCELCGSAFCFQYEAFNHLKEAHGSDEMPSKCGLCKLEFISSKMFDRHSEVHCRNRNKVLLCTRCPAKFVWPDNMRNHNCATKPEVVIEREILKCHICGRPFEVKTKLLKHLERHNLENNPTKPIIRCGLCVQSFDKLKFLREHITQHSDGVTGIDFQNGIYFKRFERSKTHDRALLQQEIHNAFEKSQISRLYRAIDKDGMEMDIHDSDSGTEEETLTYKCELCFMLFNRRKHLLNHQFEAHSDVPLPYACKDCTKQFVSQDLLQQHLYRDCWNEHRRVAQQCEYCNARFIWPNNLLKHKDIKHKHQKQPRPKRASTLKCEYCEKVFIWPKDLVRHRKTHTEGKKFGCPHCDRKFQRKDNLLAHIRTHDPDGITLLPNSSKAINHILPHLTNPHGCKRIKCMICYSEHNRIYDLRSHLRSHQYSINFEKRKESESIAFISKQLYPQVLAMDEEHLTKKISSDIIAERSLERFYSITNEHGFEVSLDSSETESDSDDEKAEKSVDADNPENSIKLVKSRRTYTCDLCPQMTFDRKYKVYEHHNSLHKWEDGRHFCLHCNARFLSSHMLELHYKNQCKNTKKRHFCRQCPLRFMWKNNLKTHIAMEHPQYQPKEVEHHASFKICYFCQSKFCTNKELRQHMTLNHATETELRYCFLCPKTYYKVDQLNEHLLRQHNIPSDYVSSIESITQSLCSNGKKEIQCKICALQFPTMSELAVHFSPTNPQNMCSVEHSIANYSITNQKGFELNLVLDSETESEETSTKGGDQKENPTKTCKPYTCSICNVSCDRKFQMVHHQRSMHSYEHLNLKCENCIFKTSCEKLLQYHMATQCFNVEKQFQCDICKFKFMWEENLQNHIAICHQPSSAADDDHADLKPPEWIDNRNDTNIFECMECHRRYNRRDRYKAHFKKFHSDLSNLDESLKIKERAKGLPSKTKNFLCAFCGVSFSNNSNLTVHMRRHTGEKPFKCDLCQMAFPRSSDLQSHRRTHTGERPYKCAHCDKSFSRQYKLNVHMRIHTGERPYTCTYCGKSFTQSNDLTLHHRRHTGERPYVCDICGEGFICATSLKQHRNSKGHLEHVADTEEDRVKQLTHFEMNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-