Basic Information

Insect: Stomoxys calcitrans
Gene Symbol: -
Assembly: GCA_001015335.1
Location: NW:217244-229911[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.7e-05 0.00078 19.4 1.1 2 23 215 237 214 237 0.95

2 16 2.6e-05 0.0012 18.8 3.5 2 23 245 267 244 267 0.96

3 16 0.0076 0.35 11.1 4.8 1 23 283 306 283 306 0.94

4 16 8.5e-05 0.0039 17.2 1.2 3 23 334 354 333 354 0.98

5 16 0.00034 0.016 15.3 1.3 1 23 360 382 360 382 0.98

6 16 5.6e-06 0.00026 20.9 1.5 1 23 388 410 388 410 0.99

7 16 2.2e-05 0.001 19.0 2.7 1 23 416 438 416 438 0.98

8 16 0.00038 0.017 15.2 2.4 1 22 444 465 444 468 0.90

9 16 0.0042 0.2 11.9 2.8 3 23 715 736 714 736 0.94

10 16 2.1e-05 0.00097 19.1 1.1 2 23 744 766 743 766 0.96

11 16 0.0029 0.13 12.4 4.8 1 23 782 805 782 805 0.97

12 16 4.3e-06 0.0002 21.3 0.6 3 23 835 855 834 855 0.99

13 16 7.3e-06 0.00034 20.6 0.4 1 23 861 883 861 883 0.99

14 16 3.8e-06 0.00018 21.4 0.9 1 23 889 911 889 911 0.99

15 16 6.2e-08 2.9e-06 27.1 2.8 1 23 917 939 917 939 0.99

16 16 1.2e-05 0.00053 19.9 0.7 1 23 945 969 945 969 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.7e-05	0.00078	19.4	1.1	2	23	215	237	214	237	0.95
2	16	2.6e-05	0.0012	18.8	3.5	2	23	245	267	244	267	0.96
3	16	0.0076	0.35	11.1	4.8	1	23	283	306	283	306	0.94
4	16	8.5e-05	0.0039	17.2	1.2	3	23	334	354	333	354	0.98
5	16	0.00034	0.016	15.3	1.3	1	23	360	382	360	382	0.98
6	16	5.6e-06	0.00026	20.9	1.5	1	23	388	410	388	410	0.99
7	16	2.2e-05	0.001	19.0	2.7	1	23	416	438	416	438	0.98
8	16	0.00038	0.017	15.2	2.4	1	22	444	465	444	468	0.90
9	16	0.0042	0.2	11.9	2.8	3	23	715	736	714	736	0.94
10	16	2.1e-05	0.00097	19.1	1.1	2	23	744	766	743	766	0.96
11	16	0.0029	0.13	12.4	4.8	1	23	782	805	782	805	0.97
12	16	4.3e-06	0.0002	21.3	0.6	3	23	835	855	834	855	0.99
13	16	7.3e-06	0.00034	20.6	0.4	1	23	861	883	861	883	0.99
14	16	3.8e-06	0.00018	21.4	0.9	1	23	889	911	889	911	0.99
15	16	6.2e-08	2.9e-06	27.1	2.8	1	23	917	939	917	939	0.99
16	16	1.2e-05	0.00053	19.9	0.7	1	23	945	969	945	969	0.91

Sequence Information

Coding Sequence: ATGGATAAAATAGTCTTAACACATAATTTCAACCAATGTCGTACATGTCTGAATAGAGGCCATAATTTGCAATCTCTTGAAGAAATGACTCAAATTGAAACAGCGCAAAACATATCGTATGCATTTGTATTAAACGAAGTGGCTAAAATAAATGTTTCATTAGATGAAGATATGAGAAATGAAATGcctcattccatttgtaattgctgcatacaaaaattaaaatctgccTATGCTTTCATACGGCAAGCTAAAAATGCTAATGAGCAACTATGCTCACTGCACAGCCACAATCAATCCTTGGATTGCTTACAGGAATCCGAAATAGACATTAATGCGTGTCTAGAGATAAAATTGGAAAATGAAAAGGCGGCAATTTCAGAAGAAAGCAAACATGAACATGATAATGCTCCAACGCCAGAAAGTATACATGGACAACAAGTGCATGCAATTCAAACTTCTGAAGAAAATGAGTTACAATTACAGTTAGATCTTCACTGTGGGCCCTATCAGGATTCTGATTCATCAGAAGAGCAATTGGATGATGAACCCTTTCAAGATGCATTGCCAAATGATTATGAAGAACCAGCAAAAACTTATAAGAAAAAACATATTACAAAAGATGAAGATAATATAGCAGTGCCATGCTTAAagtgcaataaaatttttaataattcaaaAGAGCTAACACGGCACCTGCGAAATACCCACCTGCCTGAAGATCAGAAATGTGCATGTCCATTATGTGGCATAAAATTTACTCGTCCCTGCAATATGTACAAACATATGCGTACGCTGCATGACCCAGAACAAGTTAGGCCATTATTGCCTGGAAAGGAGAAACCCTTTCAATGTGAAAAATGTCCCCGTAGATATACACAAAAAAGACAATTGAATTGTCACATCAAGGACAAACACAAAAACGGAGAGGAGTCGAAAAACGAATCTTTCAAAAGCACACCAAGTGATACAAAAAAGAAATCTGAAGTAAGACCACTTTGTTTTGTATGTGGCAGTTCATTCTCAAACAAAGCACATCTAATTGTACACATGACCCGCCATACTGGCGAAAAACCTTTTCAATGCGATTTATGTGACAGAGCGTTTCCTCGTATATCAGACTTGACCTGCCATCGGCGAATACACACAGGCGAAAAACCGTTTAAATGTAAGCTATGCGAAAAGGCCTTTAGAGTGTCCACAAAGTTAGCCACTCACATGCGTTCACATACCAACGAAAGGCCTTATAAATGTAAACAATGCGAACGCActtttaaatattccaaggatttGAATATACACAACAGGGTTCATACGGGTGAGAGGCCATATTGCTGCACAGTGTGTGGCAGCACATTTACACAAAGCAATTCTCTAAAGGCACATCGTACGAAATTGGGTCATATGGATGAAGAGCCATCATCGTTAATGCATTTTATAAGAGAGTTAACAATGAATAACCCGTCGGATTTTAGTAAACGATGTCGAACTTGTTTAAGTCAAACAAAAGGTTTACAACTTCTCACCAAAATGGCATTTGATTTGCCCCAGCAACAAAGAACATTTGCCGATTTACTTTACGAAGTAACCAACATAAATatatcaaaagaCCTGAACACATCTGAAATGCCACAATACCTTTGCCCAGCTTGTTTGCGAAAGCTAAAATCATCACATGCATTTATCAGACAGGCCAAAGAAGCCGATGATAAATGTTTGTCCATGTTAAGAGAAAGAATGATGGAGAATTGCATGAATGAGACCGAAATAGATATAAAGCCATCATTCTTAGATATTAAAATAGAAACAGAAGATGTGGAATATACAGAGCAAAGCATACCTGAAATAAAAGAGGAGATTGCTACGAACGAAGACTGTTCCATGGAAAATCCTTTGGAAGATATTGTAAGCACAAGTAATCAGGAGCAAAACAATACCAAACAGTTAATTTTCAACAATGTGAGTGATAGTGATTGGTCTGGAGAAGAAAGGGATACTGAAAGTGAAGCAGATTCCTCGAATTTTAGCAGCGAAGAAGCCGCTAAAAGCCCTAGCATGAACGtacataaaaagaaaaatggaaGTAAAACTTCTGCCTGGGAAAAATGTGATCCTAAAGATATTGAGGATATTGCTGCACCCTGTTCGCAGTGCGAtaagattttcaaaaactccaaggAATTAAAATGTCATCTAAAAAATGCCCACATTCCGGATGCTGAAAAGTGTGCCTGTCCTTTGTGTGGTGCTACATTTTCTCGTTCTTACAGCATGTATTATCATATGCGTACCATACATGGACCAGAAACTGTTACATCATTACTTCCCAAAAGGGAAAAACCCCATCAATGTGATAAATGCCCCCGAAAATATTcaaaactaaaatatttaaaatatcacCTCAAAGTAAAGCATGAGGGTAAAGACGAACAGTCTGATGTCCCAGATGGTGAAAAAATTCCCGCACCGGCAAAGAAAAAGACGGAAGCTCGTCGACCTCTGTGCTCCATATGTGGCAGTTCATTTCCCAATAAGACTCAACTGACAGTGCACATGCGGCGACATACAGGAGATATGCCTTTCAAATGTGATCTGTGCGATAGAGCCTTTCCCCGAATATCAGAACTTAGATACCATACTCGCGTGCATACTGGAGAAAAACCATATAAATGTAGTATATGTGAAATGGCCTTTCGAGTTTCCTCAAAATTGTCATCCCATATGCGATCCCACACCGACGAACGGCCGTATAAATGTAAAGAGtgtgaaaaaagttttaaatattccaaagattTAAATATCCACATGCGCACTCATACGGGCGAAAGACCATACAGCTGTAATGTGTGTGGCGTCACTTTTACACAAAGCAATTCACTCAAGACTCACCGTATGAAGTTGGGCCATATTGAGGAAAGTATGCAAACTACTAGTAGATTTAAATGGGAGGGACTAAATATTGAAAATAGTTAA
Protein Sequence: MDKIVLTHNFNQCRTCLNRGHNLQSLEEMTQIETAQNISYAFVLNEVAKINVSLDEDMRNEMPHSICNCCIQKLKSAYAFIRQAKNANEQLCSLHSHNQSLDCLQESEIDINACLEIKLENEKAAISEESKHEHDNAPTPESIHGQQVHAIQTSEENELQLQLDLHCGPYQDSDSSEEQLDDEPFQDALPNDYEEPAKTYKKKHITKDEDNIAVPCLKCNKIFNNSKELTRHLRNTHLPEDQKCACPLCGIKFTRPCNMYKHMRTLHDPEQVRPLLPGKEKPFQCEKCPRRYTQKRQLNCHIKDKHKNGEESKNESFKSTPSDTKKKSEVRPLCFVCGSSFSNKAHLIVHMTRHTGEKPFQCDLCDRAFPRISDLTCHRRIHTGEKPFKCKLCEKAFRVSTKLATHMRSHTNERPYKCKQCERTFKYSKDLNIHNRVHTGERPYCCTVCGSTFTQSNSLKAHRTKLGHMDEEPSSLMHFIRELTMNNPSDFSKRCRTCLSQTKGLQLLTKMAFDLPQQQRTFADLLYEVTNINISKDLNTSEMPQYLCPACLRKLKSSHAFIRQAKEADDKCLSMLRERMMENCMNETEIDIKPSFLDIKIETEDVEYTEQSIPEIKEEIATNEDCSMENPLEDIVSTSNQEQNNTKQLIFNNVSDSDWSGEERDTESEADSSNFSSEEAAKSPSMNVHKKKNGSKTSAWEKCDPKDIEDIAAPCSQCDKIFKNSKELKCHLKNAHIPDAEKCACPLCGATFSRSYSMYYHMRTIHGPETVTSLLPKREKPHQCDKCPRKYSKLKYLKYHLKVKHEGKDEQSDVPDGEKIPAPAKKKTEARRPLCSICGSSFPNKTQLTVHMRRHTGDMPFKCDLCDRAFPRISELRYHTRVHTGEKPYKCSICEMAFRVSSKLSSHMRSHTDERPYKCKECEKSFKYSKDLNIHMRTHTGERPYSCNVCGVTFTQSNSLKTHRMKLGHIEESMQTTSRFKWEGLNIENS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -