Scal008047.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stomoxys calcitrans
Gene Symbol
-
Assembly
GCA_001015335.1
Location
NW:176042-185302[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 6 2.8e+02 1.9 3.9 2 23 28 49 27 50 0.94
2 21 0.0012 0.054 13.6 2.0 1 23 158 180 158 180 0.97
3 21 9.1e-06 0.00042 20.3 2.7 1 23 187 209 187 209 0.99
4 21 0.00043 0.02 15.0 3.4 1 23 269 291 269 291 0.97
5 21 2.4e-05 0.0011 18.9 2.2 1 23 308 330 308 330 0.99
6 21 2.6e-06 0.00012 21.9 0.9 1 23 336 358 336 358 0.96
7 21 0.00096 0.044 13.9 0.3 1 23 364 386 364 386 0.96
8 21 0.0004 0.018 15.1 0.9 1 23 392 414 392 414 0.96
9 21 0.0047 0.22 11.7 7.4 1 23 420 442 420 442 0.98
10 21 6.9e-07 3.2e-05 23.8 0.7 1 23 448 470 448 470 0.98
11 21 0.00013 0.0061 16.6 0.8 1 23 476 498 476 498 0.99
12 21 3.1 1.5e+02 2.8 2.1 2 19 589 606 588 611 0.90
13 21 0.0033 0.15 12.2 5.8 2 23 746 767 745 767 0.97
14 21 0.0016 0.075 13.2 2.8 3 23 828 848 826 848 0.95
15 21 0.00014 0.0065 16.5 4.3 2 23 866 887 866 887 0.97
16 21 1.2e-07 5.4e-06 26.2 1.2 1 23 893 915 893 915 0.96
17 21 0.041 1.9 8.8 0.2 1 23 921 943 921 943 0.93
18 21 0.0048 0.22 11.7 0.3 1 23 949 971 949 971 0.95
19 21 1.6e-05 0.00075 19.5 3.7 1 23 976 998 976 998 0.98
20 21 1.3e-05 0.00061 19.7 0.6 1 23 1004 1026 1004 1026 0.99
21 21 8.7e-06 0.0004 20.3 1.2 1 23 1032 1054 1032 1054 0.99

Sequence Information

Coding Sequence
ATGGACAAATACATGGACTATATAAAATACGGCGACATTCTTATATCGCCATCTTTACATTATAAAGAGGACTACATACTTCGATGCTGTGAATGCAATAACTACTATACCATTTTTGAAGAACTTCTTACACACTTGACAACACATCATAACAATGACCTGGTCCAGGAGAATATAGATACGGACGTCAAGGCCCATGGGTCGCAAGAAGGCGACATGGTTTTCGGCGAAAATGACCCCCTAATAATGCAGACTAGCTATTTAAATGTGTTTAAGGTTGAAATGGAAGACCCTTCATCACAAGCACATGAAAGGGAAAAATTCATCGAAAAGGAGAATTGTGTAGACAGCGATAATGATGGATCCGAGAGTAGTGTCAACAGAGAACATAAGTATAATATCGAAGAATATGATACAGGGGAATCGTTAGATGATAGCAACCGAGTTGAAGAGAATGACAAAGACAAATTATTTTCCTGTAACGAATGTGGTAGTAAACTGAAAACCCGTAAAGGCCTTAGAAGACATACAAAACTTCATCTGCGAGATATTCAGGAGTTTAAATGTCATTATTGCGGAACAGCGTTTAAAACTTTAGGTGCAATGAATAATCACTTGAAAAAACATGGGGAAAACGAAACCGCGGAAACCAGTGCCAGTGACAATGACAATGACATTGATGATTGGCCACCTCATAACATAACAAGagaTTGTAGAACTGAAAATGCTGCAGAGGGTGTGGAGAAATGTGAAGAATATAAATCAATTATTTCCCAAGCTATGGATGATCACGAAGAAAAACCACATGTTTGCACTCAATGCGGTAGTCGTTTAAAAACGAGAAAAAGTCTAAAGCGTCATTTACGTATTCACTTACGGCAACCCATTGAAAATAACCCCGaaacaaaaattacaacaaaatatgAATGTGAATTTTGCAAGAAACTATTCCAACAATCCAGTTCTCTGAAAGACCACTTAAGAACACATACCGGAGAGCAACCTTATCTTTGCTCGGAATGTGGAAAAGCTTTTAAGAGTCTTAGTAACATGAAACAGCATTTACTTAGACATGGCACTGATCGTCCATATGAATGTCCTGATTGCCCTAAAAAATTTCCATGCCTTAGCGATTTGGCCTCCCATAAGGCAGtacatacaaaaaataaatcacaTGTATGTGATATCTGTGGAAGTGGCTTTGTAAAACCATATTTACTGAAAAAGCATAAAATGTATCATAATGGGGAAAAGAATCATAAGTGTGACTACTGTGACATGAGGTTTGTTCTTGCTGATCACTGCAGAAGACATATGCGAACACACACAGGAGAAAAACCTTATAAATGTAAATATTGCGATAGAGGGTTTGCACAGAGTAATGATTTAATTAAACACCTAAGGGGTCATTTGGGGGATAATGTGTACAGATGTAATTTGTGTCCTCAGGGATTCAGATTGCAAGGCGACTTAAGAACCCATTTCAATACACACAAAAATGATAATGAGGAAACTAAATTAGAAAACTTGCAAGCTCTCAAAGAGGATGAATTACGAatacaaatgaaatttggaCTAGTAAAACAGCAACAAATAAAGAAaaataataaatataaacatTATGCTTTAAAATCTTGGCGCAGGCAGAAAATCGAATTATTTTCAAGACCCAATAATGCAATAATGGACAAGTATACGGACTACATAAAATTCGGAGACATCCTAATATCACCATCACTACATTTTGAGGATGATTACATACTTCGGTGCTGTGAATGCAATGAATACTATTCTAATATCGAAGAACTTCTTATACACTGTACAGTACAGCATAGCGATGAACTGGTCCAAGAGGAGGACATGGATACGGACTTCAAGATTCATGGCTTGGAAGAAGGTGAAACGATTCTTAAAGTTGAAATAGAGGAGTATTTCCAAACAGGAGAAAGAGAGATGTTTTTTGAAACCCAAGATTATATAGGCACTGATAATGATGGATACGAGAGTAGTCGCAAAAGTATTTGTTATAGTTCACTGAAcaaagaacatatttctgattTGGAAGAAAACGATACAGAGAAATCATTAGAAGACGGTAACACAGTTGAAGAAAACAGCGGGCAGGAGGATTATAATGAAAAATTATTAGCCCGTAACGAATGGGATATGAGCTTGAAAAGCCTTACAGGACCTAAGAGACATACAAAAACTCCTGTGCGAAAAATTAATGAGCTAAAATGTCAATATTGCAGCAAAGCTTTTAAAACTGTCTGTACAATGAAGAAACACTTGAAAAAACATAGGGATGAAAATGGGACTGGTACAAGAGACTATGAAAATGAATCGGATCAATGGTCATCACTTTCCACATCAAGAGATAGAAAACCCCAAGGCAATGTGGTCAACTATAGCGAGAATAAATCCATTATTTCTCAAACAAAGGAATACAAAAACGGTGATCATAAAGAAAATTCACATTTATGCAACCAATGCAGCAGCCGTTTTAAAACCCCCAGAGGTCTAGAGCGTCATTTACGTAATCATTTAAGACAAAGCGGTGGAAATAACACGGAATCAAAAAGTACATCAAAACCTGTGTGCAAACTTTGCAATAAACAATTTGCGCAAACCAGTTGTCTGAAAACCCATTTAAGAACACATACCGGAGAAAAACCATatctttgccctgaatgcgggAAAACTTTTAGGAGTCTTAGTAATATGAAACAACATTTAAGAAGACACGGTACTGAACGTCCATACGAATGCCCTGATTGCCCTACAAAATTTCCGTGCATTACCGATTTAGTGTCGCATAGAGCAGTGCATACAAAAATTAGGCCACATGTATGCGATATCTGTGGAAGTGGCTTTGGAAAACCATATTTACTGAAAGTACATAAAATTTACCATGGAGAAAGGAAACATAAATGTGACTACTGTGATATGAGGTTTTTTGTTCCTGAGCAATACAAGAGACATATGCGAACGCACACAGGCGAAAAGCCTTTCCAATGTAAATTTTGCGACAAAGCGTTTGCACAGAGAAATGTTTTAATCACACATCTTAGGGTTCATTTAGGCGATAAAGTGTACAGATGTAATTTATGCCCTCAGGGATTCAGGCGGCAAGGCGATTTAAGAACCCACTTCAATACACATACAAATGATGACGAGGAGACTAAAGAAAGAAACTTAAAAGCTCTAAGGGAGGAAGATTTACGAATGCAAATGAAATTTGGTACCACAACTACAATAAGTTAA
Protein Sequence
MDKYMDYIKYGDILISPSLHYKEDYILRCCECNNYYTIFEELLTHLTTHHNNDLVQENIDTDVKAHGSQEGDMVFGENDPLIMQTSYLNVFKVEMEDPSSQAHEREKFIEKENCVDSDNDGSESSVNREHKYNIEEYDTGESLDDSNRVEENDKDKLFSCNECGSKLKTRKGLRRHTKLHLRDIQEFKCHYCGTAFKTLGAMNNHLKKHGENETAETSASDNDNDIDDWPPHNITRDCRTENAAEGVEKCEEYKSIISQAMDDHEEKPHVCTQCGSRLKTRKSLKRHLRIHLRQPIENNPETKITTKYECEFCKKLFQQSSSLKDHLRTHTGEQPYLCSECGKAFKSLSNMKQHLLRHGTDRPYECPDCPKKFPCLSDLASHKAVHTKNKSHVCDICGSGFVKPYLLKKHKMYHNGEKNHKCDYCDMRFVLADHCRRHMRTHTGEKPYKCKYCDRGFAQSNDLIKHLRGHLGDNVYRCNLCPQGFRLQGDLRTHFNTHKNDNEETKLENLQALKEDELRIQMKFGLVKQQQIKKNNKYKHYALKSWRRQKIELFSRPNNAIMDKYTDYIKFGDILISPSLHFEDDYILRCCECNEYYSNIEELLIHCTVQHSDELVQEEDMDTDFKIHGLEEGETILKVEIEEYFQTGEREMFFETQDYIGTDNDGYESSRKSICYSSLNKEHISDLEENDTEKSLEDGNTVEENSGQEDYNEKLLARNEWDMSLKSLTGPKRHTKTPVRKINELKCQYCSKAFKTVCTMKKHLKKHRDENGTGTRDYENESDQWSSLSTSRDRKPQGNVVNYSENKSIISQTKEYKNGDHKENSHLCNQCSSRFKTPRGLERHLRNHLRQSGGNNTESKSTSKPVCKLCNKQFAQTSCLKTHLRTHTGEKPYLCPECGKTFRSLSNMKQHLRRHGTERPYECPDCPTKFPCITDLVSHRAVHTKIRPHVCDICGSGFGKPYLLKVHKIYHGERKHKCDYCDMRFFVPEQYKRHMRTHTGEKPFQCKFCDKAFAQRNVLITHLRVHLGDKVYRCNLCPQGFRRQGDLRTHFNTHTNDDEETKERNLKALREEDLRMQMKFGTTTTIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-