Scal000593.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stomoxys calcitrans
Gene Symbol
-
Assembly
GCA_001015335.1
Location
NW:1991346-2000420[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.46 21 5.5 2.9 1 23 178 200 178 200 0.93
2 22 1.4e-05 0.00067 19.6 1.5 1 23 283 305 283 305 0.98
3 22 0.004 0.18 11.9 0.5 3 23 314 335 312 335 0.97
4 22 0.0079 0.36 11.0 4.4 1 23 341 364 341 364 0.97
5 22 3e-07 1.4e-05 24.9 1.4 3 23 372 392 370 392 0.97
6 22 7e-06 0.00032 20.6 0.8 1 23 398 420 398 420 0.95
7 22 0.0017 0.077 13.1 1.4 1 23 426 448 426 448 0.97
8 22 3.1e-05 0.0014 18.6 1.4 1 23 454 476 454 476 0.97
9 22 2.9e-06 0.00013 21.8 3.7 1 23 482 504 482 504 0.99
10 22 0.00012 0.0055 16.7 0.2 1 23 510 532 510 532 0.99
11 22 3.1e-05 0.0014 18.6 0.3 1 23 538 560 538 560 0.94
12 22 0.42 19 5.6 0.4 1 23 774 797 774 797 0.90
13 22 0.077 3.5 7.9 2.2 1 20 854 873 854 876 0.92
14 22 0.011 0.49 10.6 1.6 1 23 882 904 882 904 0.98
15 22 5.7e-07 2.6e-05 24.0 0.5 1 23 921 943 921 943 0.98
16 22 0.13 6 7.2 0.3 1 23 950 973 950 973 0.96
17 22 1.8e-07 8.4e-06 25.6 1.9 1 23 978 1000 978 1000 0.98
18 22 0.00081 0.037 14.1 0.2 2 23 1006 1027 1005 1027 0.96
19 22 8.6e-08 4e-06 26.6 1.6 1 23 1033 1055 1033 1055 0.96
20 22 0.00023 0.01 15.9 1.9 1 23 1061 1083 1061 1083 0.99
21 22 6.4e-05 0.0029 17.6 6.7 1 23 1089 1111 1089 1111 0.96
22 22 0.073 3.3 8.0 3.2 1 21 1117 1137 1117 1138 0.93

Sequence Information

Coding Sequence
ATGTCTTCGAGAACGATAAGCAAATGTCGAACGTGTTTGGAAGCGGTAGGCAAGTATCAGCTATCGGAATACATTGAAGAGGAgaacaacattttggaaatgttAAACGAAGTTGTACCTCAAATTCACATAAAAGAGGAGAATCAGTTTTCTGCCTACATATGTCAGACATGTCTGGAAAAATTATTAACAGGCTACAAATTTCAAAGGCTTTGTATTGAGACTCATAAACAACTAGAAAAAATGCAATGCGATTCAAGTCCAAATCAATCACAAATTCCTGATCCTCTGATGGAGGAGGAACAATCCCTAGATATTAAGGACGAACTAATAGCAAATGAAAGCTCCAATGATTGTGAAGTGAATACCTGCAATGTGGAAGTGATATATAAGTCGGATGCTGATTCAGAAGTAGCCAGTGGTGGTGATACAGATTCCAGCAATGAAAAGCTAAGCGTTTTAAAGGAAAGAAAATTGGGAAAATGTTTGAAAACCAAAAAAGTGACCAGTAAACAAAACTCAAAAGACATTTACCCATGTCAAATATGTGGCAAACAATATCATTGCTTTAGTCGTCTAAAGGTCCACATCGCTTTACATGAAGCTAAAAAAATTGGCATTGCTCAAGAAAAAGGTAGCAAAAAGCCTCAAAAAACTTCAGAGAATCAAGAGGATCAACAAGTTATACCAAAGATTTTAGAGAACCCAGCAGAGGATAATAATAAAAGCTTGGATATAGGAGAACAAAAAATGTTGTCGCCTGAAACTTTAAAGGTGGCTGATAACAACGAGCCATTAGATAAAGATGAAGaccaaaataaaatGCCAAATAACAATGACAGTAAATATACCTGTGATAACTGTGACATGGTCTTTGATCGTCCATTTAGGCTAAAACGTCACCAACGCCAGCATTCAAGCGACAAACATCCATACGGATGTACACTTTGTAAAAGAGACTTTTTTTCTGCCAAACCCCTCATCAAGCATATAAGAAAGGAACATCCAGAGGCAGAAAAATTCAACTGCGACCAGTGTGAAGAAACATTTATTCTGCACAATCATCTAATAAAGCACCTGAAGAAACGTCACAAGAGTGGCCGAATTCTATTCTGTGATATATGCGATAAAGATTTCAAATATAAAAGTTCTCTCGAAAAACACATGCGTAGCCATAACGGAGAAAGACCCTATTTATGCGCCCAATGTGGCAAAACATTTAGAAGCTCAAGTAATCTAAGCGAACATGTGACTAGGCATTCAGGGCTACCTACGTTTGCATGCCCCGAATGCCCCAGACGTTTTAAGTGCGGATCAGACCTCAGAAAGCATACTGCAACACACACCAATTTGAAGCCACATGTTTGTGATATCTGCGGCTTTCGTTTTACAAGAGCCTATTCTTTGTTGGAACACAAACGTTTGCATACTGGGGAGAGGCCTTTTAAATGTGATCAGTGCGACAAACGATTCGCTATTGTTTATCACCTTAAACGGCACATGCGAACGCATACAGGAGAGAAACCATACAGATGTAAGTATTGCGAGCGAGCTTATGCTGTGGGAGGGGATCTAACCAAACATTTGAGAATTCATTTGGGCGAGAAAACATATCTGTGCACCGAATGTCCCATGGCGTTTAAATATAATTCGGAATTACGCAAACATCTTATAGAACACTATAAAATGAGCCAAAATGAGCTCAATAATGGCAAAGGAAAAGGACATGAACTGAAGGAAGATAATAAGGAAAAACAACAAGATGAAATAattaaaaatacaaaaaaatttaaaaaaaataatcgatTGTGCAGGATGTCGGAGGAATTAATGACATCATGTCGTACCTGCATGGACGAGCAGAGCAGATATTACCAAATCTATGATTATGTAGATGAGAACTATACCATTGTAGAAATGTTGGATGCTATTGTGCCACAGATTAATGTCAAAGAGGAGGATGGCGTCGAATTTTCTTCACTTATATGCGAGTCGTGTGTGGACAAATTGGTCACAAGTTTTACTTTCCAACTCTTGGCAATAGACAGTGACAAACGACTTCGCCAAATCATTGAGTCTCCGGTGGAACCAGTTGAAGAGTTTGTTGTACAACAAGTGGATGATTTAAAGGATGGGATCGAGGATGAAGCTAACGAATTGAAAATTGAATTAGAAGAATCTCAGATAAAGGAGGACGAAAcattaacaaatgacaatagCAATATATATtccagcAATGACGATGTTAGCGAACAGGAGGAGAGACAAGACATAAATAatataccatttaaaataataaaaatcaaCACAAGGAAAAGGTTTACTTGCACGGACTGTGGAAATATATACGATAGAGTGGGACGTATCGAACAGCATTTATACAAAAGGCATGGATTTAATCCAAGTGATATTAAAGATTTTATCAAACAAGCCGAAAGCTTAGAGGAGGAAGCTCAAAAAAATGATTGGGATGCATACCTTTCGGACAAAATTCAGATAACCGAAACTGCTGATGATTCAATTCAAACTGACGGAAAGAAACAACCAGTAAATCGTCAGTATTCGTGCAAAGCCTGTGGAAAAACATTCAATTGCCTTTCCCGTTTGAAACGTCATGTGCCAGTACATTCCATGGATAAGCCGTATACCTGTGAAATATGTCTTCGTGGTTGTTCTACAGTGAATGCGTTCAAACGACACCAATTGTTGCATACTATGGACAATGTAGAAAAAGATGGTCAAAAAGAGACAGCAAATAGTTTTCAATGTCCCTACTGTCCCAAAAGTTTCGCCACAAAAAATTCATTATCTGCCCATCGCATATCGCATTCACATATAAATGCCTCATACCCTTGTGATTTTTGCGAACGTAGGTACATGACAATGAGAACTTTGGGAGAGCACATTATAAGAAGCCATCCTGACACCACTTATCGTTGTGATCAATGTGGCAAAAAATTTGCTCAGAAGGAACAATTGCAAAAGCATATGTATTCGCATAGAGAAATACAATTATCTTGTGACATATGTGAAAGATCATTTACTTCGGAGTTTGCTGTAAAAGAACACATGTATATACACACTGGGGAAAATCCTTACCTATGTCCAACTTGCGGTAAATCATTCAAGTATAGCAGCAGCTTACGAAAACATATGGAACGTCATACTGACGAAAAGAAATTCCAATGTCCTCAATGTCCGAGGACCTTTAAGTGTGCTGTAGATGTTAAAAGACACATAAAAACGCACCTTGGGCTTAGACCTTATAAATGCAACATATGTGGTTTCCGTTGCACCCGATCGTCACATTTAAAGCGTCACAAAGAGTTGCATGAAAAAAAGAGTTTTCACAAATGTATTGATTGCAATCATATGTTCCCTTCTTTACAATCATTGCGACGCCATATATGTTCTATCACTACTGATGAGGAAAACACTATGCATATCGAATAA
Protein Sequence
MSSRTISKCRTCLEAVGKYQLSEYIEEENNILEMLNEVVPQIHIKEENQFSAYICQTCLEKLLTGYKFQRLCIETHKQLEKMQCDSSPNQSQIPDPLMEEEQSLDIKDELIANESSNDCEVNTCNVEVIYKSDADSEVASGGDTDSSNEKLSVLKERKLGKCLKTKKVTSKQNSKDIYPCQICGKQYHCFSRLKVHIALHEAKKIGIAQEKGSKKPQKTSENQEDQQVIPKILENPAEDNNKSLDIGEQKMLSPETLKVADNNEPLDKDEDQNKMPNNNDSKYTCDNCDMVFDRPFRLKRHQRQHSSDKHPYGCTLCKRDFFSAKPLIKHIRKEHPEAEKFNCDQCEETFILHNHLIKHLKKRHKSGRILFCDICDKDFKYKSSLEKHMRSHNGERPYLCAQCGKTFRSSSNLSEHVTRHSGLPTFACPECPRRFKCGSDLRKHTATHTNLKPHVCDICGFRFTRAYSLLEHKRLHTGERPFKCDQCDKRFAIVYHLKRHMRTHTGEKPYRCKYCERAYAVGGDLTKHLRIHLGEKTYLCTECPMAFKYNSELRKHLIEHYKMSQNELNNGKGKGHELKEDNKEKQQDEIIKNTKKFKKNNRLCRMSEELMTSCRTCMDEQSRYYQIYDYVDENYTIVEMLDAIVPQINVKEEDGVEFSSLICESCVDKLVTSFTFQLLAIDSDKRLRQIIESPVEPVEEFVVQQVDDLKDGIEDEANELKIELEESQIKEDETLTNDNSNIYSSNDDVSEQEERQDINNIPFKIIKINTRKRFTCTDCGNIYDRVGRIEQHLYKRHGFNPSDIKDFIKQAESLEEEAQKNDWDAYLSDKIQITETADDSIQTDGKKQPVNRQYSCKACGKTFNCLSRLKRHVPVHSMDKPYTCEICLRGCSTVNAFKRHQLLHTMDNVEKDGQKETANSFQCPYCPKSFATKNSLSAHRISHSHINASYPCDFCERRYMTMRTLGEHIIRSHPDTTYRCDQCGKKFAQKEQLQKHMYSHREIQLSCDICERSFTSEFAVKEHMYIHTGENPYLCPTCGKSFKYSSSLRKHMERHTDEKKFQCPQCPRTFKCAVDVKRHIKTHLGLRPYKCNICGFRCTRSSHLKRHKELHEKKSFHKCIDCNHMFPSLQSLRRHICSITTDEENTMHIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-