Scal000599.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stomoxys calcitrans
Gene Symbol
-
Assembly
GCA_001015335.1
Location
NW:2019730-2025737[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.00037 0.017 15.2 2.5 2 23 210 232 209 232 0.97
2 24 5.7e-06 0.00026 20.9 1.4 1 23 298 320 298 320 0.98
3 24 0.08 3.7 7.8 2.4 1 23 326 348 326 349 0.90
4 24 0.0046 0.21 11.8 0.6 1 23 370 393 370 393 0.96
5 24 0.00016 0.0072 16.4 2.4 1 23 399 421 399 421 0.98
6 24 9.9e-06 0.00046 20.1 2.4 1 23 427 449 427 449 0.99
7 24 1.8e-07 8.1e-06 25.6 1.8 1 23 455 477 455 477 0.96
8 24 0.0042 0.19 11.9 2.3 1 23 483 505 483 505 0.98
9 24 0.00015 0.007 16.4 0.8 1 23 511 533 511 533 0.96
10 24 9.1e-07 4.2e-05 23.4 0.4 1 23 539 561 539 561 0.99
11 24 1.8e-07 8.2e-06 25.6 2.9 1 23 567 589 567 589 0.99
12 24 0.00094 0.043 13.9 0.1 1 23 595 617 595 617 0.93
13 24 0.00015 0.007 16.4 1.5 3 23 880 900 879 900 0.97
14 24 3.3e-05 0.0015 18.5 2.3 1 23 906 929 906 929 0.95
15 24 0.001 0.047 13.8 0.0 1 23 942 964 942 964 0.97
16 24 0.0043 0.2 11.8 1.0 1 23 969 992 969 992 0.97
17 24 0.00021 0.0097 16.0 0.9 1 23 998 1020 998 1020 0.99
18 24 3.4e-07 1.6e-05 24.8 1.9 1 23 1026 1048 1026 1048 0.98
19 24 0.00019 0.009 16.1 3.6 1 23 1054 1076 1054 1076 0.96
20 24 4.7e-06 0.00022 21.2 1.9 1 23 1081 1103 1081 1103 0.99
21 24 7.5e-05 0.0035 17.4 0.5 1 23 1109 1131 1109 1131 0.97
22 24 0.00047 0.021 14.9 3.7 1 23 1137 1159 1137 1159 0.98
23 24 2.9e-05 0.0013 18.7 0.9 1 23 1165 1187 1165 1187 0.97
24 24 0.00045 0.021 14.9 3.0 1 23 1193 1215 1193 1215 0.97

Sequence Information

Coding Sequence
ATGTCCTCTTTACTGGGGCGCATTTGTCGCACCTGCCTCTTGGTATCACCCGAAATGTACAATTTCCAAGATATGAAGGATGGAAATCGAATAATAGATATGCTGAATCAAATTGTTACCATTGATGTATTCTGTGAAGATGACTTGGAAACATCATTGCCTAGAGAAATTTGCTTGGATTGCTGTGAAAAGTTGCATATATCACACAATTTTCAGCAGATGTGTATagtcaataataaaaaaatacgaAGTCTCATTAGGAATCAAGAGGTGGAGAAACTATGCGATATAGAATCAAAGGAAAGTGCGAAAGATTTTGGAAAACGCCGCTATGAAAACAAGGATCCCTTTaaattggaagacaatattaaaGGCAAATATGACAACATTGTAAATGTTCGTGGTGGATTGATTTGCTTAAAATTGCAGCCTAAAAACAGGCAAGAACAACAAGACATTAGCGTGAACAATTCAAGGACAGGAATGACTGACAACAATGTAGAAAGTGAAGAGGATGAGGACAATGTACCACTTAGTGTGCTTCGCAATCGCGAAGATGAAGGCAATAGCGAAATTGTTCATAGgACATCTGATTCTCATAATaaagataaacaaaaatttataaacaaatgcgATTTATGTGTGAAAGAGTTTTCTTCAAACAAATTGTTGCAAAAACATAAACGAAGTAAACATGTACAAAACCCAAATTCTGTCAAAGAAAAACATACAAATAATATTTCATCGAATAATGGACACATTCAGGAGTTCTTGGACAGCAATGACGATGACATGACTATTGTTTGCAATAGCGAGTTTGATGAAATGTCTGCTAGCGAAGAAGAGGACCACACTTTGGTTATAGAAAAAAATGCTGCTCTACCCCATAACTATCCTTGCACAGAATGCCAGGCATCATTTCGTTTTCAGAAGCAATTGGAAAGACATATTAAAAAGCATAATGAAGCTCATCGTTTTGTTTGTATAACCTGTAATGATCGCTTCAAATATCCCTTTATGCTAAAGAAGCACATCGAAACGCATCATCAATCTGAAAagtcaaaatcaaaaataacaaaactgaAGAAAGATAATGGGGAAAAACCGCAtgaatgcaaatattgcccttCAGCGTATACAAATGTAGGGGGATTGGCACAACACATGAGCAAAAAGCACCCAGAAATAGTGCCATTTAAGTGTGACAGATGCGAGAAAACATTTGTAGTTGAAGAACACTTAAAAATTCACACCAATAGGCACATGGGTatcaaaaactttaaatgtgAGCTGTGTGAAAAATcattttcatttaaatttgctATGAAACAGCATATGAGAATCCATACGGGAGATTTAAATTACTTATGTACTTTATGCGGCAAAAAGTTCTATAGACCAAGTAATTTAAGGCAACACATGCAAAGGCATGGAGACGAGAAACCTTACACTTGTCCCAATTGTCCTAAACGTTTTAAATGTCCCTCTGATCGGTATATACATTTAATGACACATCAGGAGGGAAAAAATCATGTGTGCTCAACATGTGGTGCTAGATTTTCCAGAGTAGATACTTTGCAGCAACACCAAATACTACATACGGGGCAAAAACCATACAAATGCGATCAGTGTCCAATGGCCTTTCCCCGCCTAATGAATCTTAATCGCCATTTACGCACACATACCGGAGAAAAACCGTACAAATGCAAGTACTGCAATAAATCCTATGCACAAAGTAATGATTTAAACAAGCATTTAAGGACTCATCTTGGTGAAAATACTTACATTTGTACACAATGTCCGGCGGCATTTAAATATCAGGCAGACTTAAAAACCCATGTTGGCGAACATTATCGTAAACAAAAGGAAGAGGAACAACGCAGTAACGCAGGAAACTCCTCCAATGAAACCACAATCAATAACACAGCAGAaataaatatgtccTGTCTGATGGGACGTATTTGTCGAACCTGTCTATTGGAGTCACCCACAATGCACAAGTTATTGGATGTGAAAGATGATAAATTAATAGAAGATGTGCTAAATAAGACAATTCCTAACAATATGTTCTTCGAAAATGAACAGGAGCTATCATTGCCAGTAGAAATTTGTAGCGATTGCTTGGAAAAATTATACATTGCttacgattttcaacaaatgtgtatGGCCAATAATGAGAAGTTGCGAACTCTCATAAAGCTTCAAGAGACGGAAGATATATTAGTTCCAGAGACAGGCGGCGAAAGCGACCAAGATatcctgcaatatggcacggAGGAACTGAATGATAATTGTGATATGAAATCTGAGCTTGAAGATGAATTCTGCTCCAGCGAAGTTCAAAATGCTTTTGATATATTGGTGGATTCATCCAAGGAGGATGTAGACATTCTTGAAGAACAACAAATCGACGAGGTTAAAATAGAAATTGAGGCCATGGACAACCTGGAAAATGAATTTCTCGAAGCGGAAAATAAAATTGGGGACGAAACCAATCATGACGAGGACGAATATTGGCCAAATGATTTGGATAATAACGGCAACGCTAAAGCCATGGTGACAAAGAATCGCAAAACGAAATTAAACAGAAAATATGTCAAGCGCATCTCCTCCAAAgcgaccaacaacaacaaaatctgtCTCCAATGCAATAAGACTTTTAACAAGCGCGCTTTTCTAACACGCCACATGTCTGTTCACAATGAGGAAAATACATTTGTCTGCCATATATGCGATTATCGATTTTCTACGGAAAAACTATTAAAAGTTCATATTTCTTATAAGCACAACCGCGGTGTAGCCATAAGTTTAGCTGGTGGTCCCTATCAGTGTCCCGATTGCCCAATGGTATTTGAAGAAACTAGAGCTTTGTCCGCTCACAGAGTAATGCATTCGGAAAGGGATTTTAAATGTAAGGTATGTAGTGTAAACCTAAAGACCCTATCTGCGGTAACACGACATATGAACCAAAAGCATCCTGGAGTTCTACCGTACAAATGTGAAATGTGTGAAAAGGCATTTCCAGTAGAGACACACTACAACGACCATTTAAATATGCACAAGGGCTACAAGAAACATAAATGTGAAATGTGTGATAAAAgTTTCCCCAACAGCACTGCCCTCAAAGACCATATGCGTTCCCACACTGGAGAGTCGCCCTACTTGTGTTCCCACTGCGGCAAATCTTTTAAGACATCGAATATACTACGTCAACATTTACAAAGACACGGAGAGAAGAATTTTCAATGTCCCGAGTGCCCTATGCGTTTCTATGCCAAGGTCAATCTTCAAAAGCACATGTGTACTCATTCCAAAGAGAAACCTTTCGTTTGTGATATTTGTGGCTCATCCTTTACTAGAGGAGACTCCCTGAAAGCTCATCGCTTTAAGCATACTGGAGAGCGACCCTTCAAGTGCGAAGAGTGTAATATGAGttttgtttttaaacgcCATTGGATGAGGCATAAGATAACACATACTGGAGAAAAACCTCATATGTGTACCTACTGTGACAGGAGTTATGCAGCCAGCGGAGATTTAGTCAAACATTTGAGAACACATTTGGGGGAAAATACATACTTTTGTGATGAGTGTCCGCTTACCTTTAAATATCAACATGATTTGAGAGACCATAAAAATCAGCATTACAAAGAGAAAGCTGTCAATTTGGAGACAGTGGATAAAGATGTGTCCTAG
Protein Sequence
MSSLLGRICRTCLLVSPEMYNFQDMKDGNRIIDMLNQIVTIDVFCEDDLETSLPREICLDCCEKLHISHNFQQMCIVNNKKIRSLIRNQEVEKLCDIESKESAKDFGKRRYENKDPFKLEDNIKGKYDNIVNVRGGLICLKLQPKNRQEQQDISVNNSRTGMTDNNVESEEDEDNVPLSVLRNREDEGNSEIVHRTSDSHNKDKQKFINKCDLCVKEFSSNKLLQKHKRSKHVQNPNSVKEKHTNNISSNNGHIQEFLDSNDDDMTIVCNSEFDEMSASEEEDHTLVIEKNAALPHNYPCTECQASFRFQKQLERHIKKHNEAHRFVCITCNDRFKYPFMLKKHIETHHQSEKSKSKITKLKKDNGEKPHECKYCPSAYTNVGGLAQHMSKKHPEIVPFKCDRCEKTFVVEEHLKIHTNRHMGIKNFKCELCEKSFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDEKPYTCPNCPKRFKCPSDRYIHLMTHQEGKNHVCSTCGARFSRVDTLQQHQILHTGQKPYKCDQCPMAFPRLMNLNRHLRTHTGEKPYKCKYCNKSYAQSNDLNKHLRTHLGENTYICTQCPAAFKYQADLKTHVGEHYRKQKEEEQRSNAGNSSNETTINNTAEINMSCLMGRICRTCLLESPTMHKLLDVKDDKLIEDVLNKTIPNNMFFENEQELSLPVEICSDCLEKLYIAYDFQQMCMANNEKLRTLIKLQETEDILVPETGGESDQDILQYGTEELNDNCDMKSELEDEFCSSEVQNAFDILVDSSKEDVDILEEQQIDEVKIEIEAMDNLENEFLEAENKIGDETNHDEDEYWPNDLDNNGNAKAMVTKNRKTKLNRKYVKRISSKATNNNKICLQCNKTFNKRAFLTRHMSVHNEENTFVCHICDYRFSTEKLLKVHISYKHNRGVAISLAGGPYQCPDCPMVFEETRALSAHRVMHSERDFKCKVCSVNLKTLSAVTRHMNQKHPGVLPYKCEMCEKAFPVETHYNDHLNMHKGYKKHKCEMCDKSFPNSTALKDHMRSHTGESPYLCSHCGKSFKTSNILRQHLQRHGEKNFQCPECPMRFYAKVNLQKHMCTHSKEKPFVCDICGSSFTRGDSLKAHRFKHTGERPFKCEECNMSFVFKRHWMRHKITHTGEKPHMCTYCDRSYAASGDLVKHLRTHLGENTYFCDECPLTFKYQHDLRDHKNQHYKEKAVNLETVDKDVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-