Scal002945.1
Basic Information
- Insect
- Stomoxys calcitrans
- Gene Symbol
- ttk
- Assembly
- GCA_001015335.1
- Location
- NW:596954-622721[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-19 3.3e-16 58.3 0.0 2 45 567 611 566 611 0.97 2 2 3.1 5.3e+03 -3.1 0.7 3 11 644 652 644 655 0.82
Sequence Information
- Coding Sequence
- ATGTCCGTGCAACAATTTTGTTTACGTTGGAACAACCATCAACCCAATTTTATCTCAGTCTGCTCATCATTGCTGCATAATGGCACACTAGTTGATGTGACATTAGCTGCCGAGGGGAGACAATTGCAGGCCCACAAAATCGTATTGTCGGCATGCAGTTCATATTTTCAGACACTCTTTACCACGAATCCATGCCAACATCCCATTGTTATATTAAAGGATGTACAATATGATGATCTGAAAACTATGGTCGATTTTATGTACTATGGTGAGGTAAATGTATCGCAAGAGCAACTGCCTCACATATTAAAAACGGCAGAAATGCTCAAAATCAAAGGCCTTGCCGAAATGCCCACCGATCCTGCCAATTTAACTAAATCCGACAGTAAATCATCAAATGATGCAACAGAATTAGTGGGTGGAAGTGGTGGCAACAATGTGCTAAGTAGTGGTGGCAACAGCAGTACTGGTGGCGGTGGAGGTATTGGCAGCAATAGTGGCGCTGGCAGCGTTAGTGATTCCATATGGGGAAGCACAGAATTTcaacaacaccagcaacaacagcagcagcagcaacaacaacagcagcaacagcatcaaCACCAGCAACATCATCAACAGCTGCAagcacaacagcagcaacatcaccatcagcagcagcaacagcaattgCATACACAACTACAGAATAGTCAAACACAAACttcacagcaacagcagcagcaacagcaacatcatcaacaaTTAAGACGCACACCATCTCCATTAGGCGCGGGCGCCTCACCGGCAACTAGAAGAAAACGATTGCGAAAGTCCTCCAATAATGGTTCCGGTGACCGCACTAATTCCGAAGATCACAACACATCCTTGGATGCTGCAACCGCTGGTGGCTTAACACTATCGCAGATGAGCCAAATGACATTCGGTAGTTCGGCTACGAATAGCGGTCTTGGTGGCTTGACAGCACATTCATTACATACGGCTAAACTGCTTAAAGAGGCATCGAATAATGATCTAGATCATAACCAGCAAGATTCAGATAGTTTAGATGACACCCATGGACATGTACATATGCAAATTAAACCTGAAGTGGATATAAGTGGTGTACAACAATCGATGCCATTGGATATATCTGGTGCAACAACTCCCTCTGAACATGATGCTCCTAATTCGCAATCTGCCCATTCAGGTTTACAATGGACGGTTGTTGAATCGAATTATTCACGCTTTTCGCTGCCATCCTGTCCCACCAATTTAATTGGCAATACCAACAATCAGAATCAAAACACCAACAATAACAGCTCAAGTAGTGAACAGCATCAGCAGCAACAGCGTCAACAGCATCAACAGCAGCACGATGCTGTCAATagccagcagcagcaacagcagcagcagcaacaacagcacttGCAGCAATTACAACAATACCAACAGCAACATCAGCAAAACTCCACATACTCTCCGCAAATTATCACTGTAAGTGGGTATACCAATGCGGCTGCAGTTGCGGCGGCCCAAAACATGTCGCCACCCTCGCCCAATGACAGtaatatggtgcaatccgtgTACAGTCAAGGTCCCTCGCCTTCTGCTTCGCCGGTGGCCAATGCTGGAGGTGGCGGCGCTGGCAATTTGTCGGCAAACAATTCGGCCAATAATGCCAACATCAAACGCAAACGTTCTGTCAATCCACAAGGTGATGAGAATTTCATTCGCGCCCTGGAGGCAGTGCGATCGGGTGGTATTGGTTTTTGTAAAGCAGCGCGGCTTTATGGTGTTAACAATCGCACGCTTTGGCTGGAGTATAAAAAACGAGGCTATCCTGTGTCGAGGCCAAGCATAAAGTCGCGCGTTGTCAAACAAGAACCGAATCTCTCGCCATCGCCCACGCCGCCAGATAACGCGCAGGATGATACCAATGAAAACTACGATCATATGGCAGCAGCAGTGGCTGCAGCTCAAACGGCAGCTCTCAATATGCAAATACCTCCGCCCTCGGATACTCCAACGCCCTCGTTAATGTGCACCCCACACCACGCAGGTTCCACCAGTGGTCCCACCACACACCCCGCCATGGGGGTCATGAGTTTCCTAGACACCCGCCATATGGATTTCCCCACAAGTCTGCATTCAATGTCCCGCCAGCGTTATATCGATGCCACGGGGGCTGGTGCTGCAGCCGGTGCGGGCACAATCAACGTTAACCCGGCAGCTGCAATGAATCTACAGAGTAttaatttcaactcaatatag
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQTLFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKSSNDATELVGGSGGNNVLSSGGNSSTGGGGGIGSNSGAGSVSDSIWGSTEFQQHQQQQQQQQQQQQQQHQHQQHHQQLQAQQQQHHHQQQQQQLHTQLQNSQTQTSQQQQQQQQHHQQLRRTPSPLGAGASPATRRKRLRKSSNNGSGDRTNSEDHNTSLDAATAGGLTLSQMSQMTFGSSATNSGLGGLTAHSLHTAKLLKEASNNDLDHNQQDSDSLDDTHGHVHMQIKPEVDISGVQQSMPLDISGATTPSEHDAPNSQSAHSGLQWTVVESNYSRFSLPSCPTNLIGNTNNQNQNTNNNSSSSEQHQQQQRQQHQQQHDAVNSQQQQQQQQQQQHLQQLQQYQQQHQQNSTYSPQIITVSGYTNAAAVAAAQNMSPPSPNDSNMVQSVYSQGPSPSASPVANAGGGGAGNLSANNSANNANIKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPTPPDNAQDDTNENYDHMAAAVAAAQTAALNMQIPPPSDTPTPSLMCTPHHAGSTSGPTTHPAMGVMSFLDTRHMDFPTSLHSMSRQRYIDATGAGAAAGAGTINVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01397556;
- 90% Identity
- iTF_00817531;
- 80% Identity
- iTF_01375030;