Scal001611.1
Basic Information
- Insect
- Stomoxys calcitrans
- Gene Symbol
- -
- Assembly
- GCA_001015335.1
- Location
- NW:1458679-1460846[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-09 7.4e-06 25.2 0.0 8 39 405 436 398 440 0.84 2 4 2.3e-14 3.9e-11 42.1 0.0 5 44 456 495 453 496 0.93 3 4 0.01 18 4.8 0.0 27 37 525 535 521 540 0.89 4 4 4.5e-17 7.7e-14 50.8 0.1 4 41 564 601 562 603 0.93
Sequence Information
- Coding Sequence
- ATGACAATGAACCATTTAAAATGGATGGGGCATTCGGCCACCATACTGGATATCCATAAAAATTTAAGGGACGATCTACAAAGTTGTGAAGTTACATTGGCTGGAAAGGGAGGCCATTCTGTTAAGGCTCATCGCTTCGTACTATGTTCATGCAGTGATTTGTTGAGAAGTCTACTTTGCGACATACCTCTGCAACAGGAATGTTGTGTAATTTTGCCGGATATAAAGGGTTATCTATTGGATAATGTTCTTTCATTTATCTATTTGGGTGAGTGCTCGCTCTCTTCCTCAAATTTGTCCGAATTTCTGGAAGCTATAAACATTTTGGGCATAAAGAGCGCAATAAGCTTCGAATGCAATACCAATGCTATGCAGGCTGCTCAGAATGCCCAGAGTCAGAATCATAACAATGGCCCCACAATATCGGCAACCAACCCTTCAAATGTTGTTGGAGTGGGCAGAAATGTCAGCACAAGAACCTCCGACCACGGAACTACCACCCTACACCACGAAGAAGAACTCATTGAGACGCAGACCATTTTGCATGCTGACGCTCAGACAACTACATCCAATACGAACAATATAACATCCACAACAGCTGAAAATCGAGAATTGGAATTTCTAGACGTCTATCACCATGATCCTCAGCACAAGATAACGTATTCAATAGAGCACGTTCCTGGTTCCACAAGCGGTAATGAATTTATTTTGACCGAAAATTCGGGTAGATTTACTTTGACTCATAATCATAAGTTAGAAACGGCGTCAAGTGCCGAATCTACTAACATGGAGGTTACAGAGGAAGACGCATGCGAATCACACATAATTGAAGAATATAGCAGTGGTGATGAGCCTCCTTTAATCCACATCAGTAGTGGAGAAGCACCTTCAGTATCAACAGCAAATGTTATGGCCGCAACTCAGGCAGTAAACACACCTTCAAATGCAATTTTagaattaaaaccaaaaactaaGACGATAAAACTTAAAACCAATGGTCCCCCAACTGTCATACCGAAATTAGAGCCTGTGAACGACATGGATTCCGTAGTGCAGCACATTGAAGAAAATATATCTATGTTGCATTCTGACCAAGATGGCAGTTATACTTTGCTTAAGGATAACTCTGCCAACGATTCCTTCGTTTCCGGCAATACAACAAATGAATCGGATTTCTCCTTGAATTCTTCGAATTTGACTGCCGCCGACTTAGCTTACCAAGCTATGGCAAATGAGGGAATGTCATTACCAAAGGCAGCAGTAAAATATAATGTCTCAAAATCTGAATTATGGAAACGAGTTCGCAGCACTGGAGTAGAAAACTTACAGAAAACGCCTAAAATGGACCCAGAGAAATTGGATGTCATCGAATTAGCCAGCCAAGCTGTCATAAGTGAAGGCCTCTCATTACAAAAGGCTGCAGTTCGCTACGATATATCCAAAACAGTGCTATGGCGCAGAGTACGCAAACATCCGCAGTATATGAAAACAGCCCGGGAGAATCCCATTATATCTAAAGCTTATGAACGCCTTAAAACAGGCGAGTCCCTTAAAAGTATATCGCAGGATCTCGATATACCTATGTCCACGCTCCATCGCCACAAGGTACGACTGTCCAATTCGGGGCAGTTACCGGACTTTGTCAGTTGCAGAAAGCGTGACAGCGTATCCAAAGATGATCTAAAGGCCAAACTTGCTAAGGCAGTACATGCTTGCGTACATGAGGGAATGTCACAAAATCACGCCgctaatttgtttgaaatttctaaAAGCACTCTGTGGCGCCATCTTCAACGACGTGTGGCCGAAGCCGAAGCAGCAGAAACATTAGAGGGTGCTATTGAAGAATCGATGGAGGAGGGGGACGATGATATAAAAGAGGAAGTCATTTTATCATAA
- Protein Sequence
- MTMNHLKWMGHSATILDIHKNLRDDLQSCEVTLAGKGGHSVKAHRFVLCSCSDLLRSLLCDIPLQQECCVILPDIKGYLLDNVLSFIYLGECSLSSSNLSEFLEAINILGIKSAISFECNTNAMQAAQNAQSQNHNNGPTISATNPSNVVGVGRNVSTRTSDHGTTTLHHEEELIETQTILHADAQTTTSNTNNITSTTAENRELEFLDVYHHDPQHKITYSIEHVPGSTSGNEFILTENSGRFTLTHNHKLETASSAESTNMEVTEEDACESHIIEEYSSGDEPPLIHISSGEAPSVSTANVMAATQAVNTPSNAILELKPKTKTIKLKTNGPPTVIPKLEPVNDMDSVVQHIEENISMLHSDQDGSYTLLKDNSANDSFVSGNTTNESDFSLNSSNLTAADLAYQAMANEGMSLPKAAVKYNVSKSELWKRVRSTGVENLQKTPKMDPEKLDVIELASQAVISEGLSLQKAAVRYDISKTVLWRRVRKHPQYMKTARENPIISKAYERLKTGESLKSISQDLDIPMSTLHRHKVRLSNSGQLPDFVSCRKRDSVSKDDLKAKLAKAVHACVHEGMSQNHAANLFEISKSTLWRHLQRRVAEAEAAETLEGAIEESMEEGDDDIKEEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01375061;
- 90% Identity
- iTF_01375061;
- 80% Identity
- iTF_01375061;