Scal011627.1
Basic Information
- Insect
- Stomoxys calcitrans
- Gene Symbol
- retn
- Assembly
- GCA_001015335.1
- Location
- NW:26178-131873[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8 1.1e+04 -3.5 0.0 7 37 43 70 40 77 0.68 2 2 2.5e-26 5.8e-23 80.7 0.0 2 89 216 301 215 301 0.96
Sequence Information
- Coding Sequence
- ATGACAAGAGTGGGTTCTCGCTTAAATGCGTCGATGACCAGCAATGGTGGTGACATTACAGCGCATGAACATGCCACTGAGATGCAGATGAGCCATCACCATCAGTTTCCACCCAACCATCCTTTGAATGCGTTGAATAATTTCATGGGTATGAGCGGTTTACATGGGATTCCGAGTTTGCAACACAATGATGTATTAGAGAAGCTCAAGATGCAGGTTCGCGACATGAAAGTCGGATTAATGGATCAGGACTATGTGGCTGCACATGCAGCTGCATTCGGTGCAAATGTAATGCCGACTTCGATTAACACTGCTTTCTCATTACCGCCCACGACAATGGCTTCCTTCACGCATGCTGCCCAGACTCTGGCCGCACAGGCCAGCAACAACTCACATCTTGGAACAAATGCCACATTGGTTCCACCAGGAGGATCAACAAGCATGGCGACCAATGGCGGGCACAACGGCAACTCTAATTTCTCGTTTACCTCACCAACAGCTCCAAACGCAAAAGACGTTAATCCTGCCTCGAATTCTTCAACCTCCAGTGAGACCTCTAACTCTTCGCAACAAAATAATGGCTGGAGTTTTGAAGAGCAATACAAACAAGTTCGTCAGTTGTACGAAATCAATGATGACCCAAAACGCAAGGAATTTCTCGACGATCTCTTTTCGTTTATGCAAAAAAGAGgCACACCCATCAATCGACTGCCAATTATGGCCAAATCCGTATTGGATCTGTACGAGCTGTACAACCTGGTGATTGCGCGCGGAGGTCTGGTCGATGTCATCAACAAGAAGTTATGGCAAGAAATTATTAAGGGCCTGCATTTGCCGTCGAGCATAACAAGTGCTGCCTTTACCCTAAGAACACAATACATGAAGTACTTGTATCCCTATGAATgcgaaaaaaagaatttaagtACACCGGCGGAACTTCAGGCTGCAATTGACGGCAATCGTAGGGAGGGGCGTCGTTCCAGCTATGGCCAATACGAGGCTATGCACAGTCAAATGCAAATGCCTCCAATGGCCCGGCCAAATTTGCCCGGAGGAATGCAACAGATGTCCCCATTAGCATTGGTCACACATGCAGCTGCTGCCAATAATCAACAAGCTCAAGCTGCACTTCAGCAGGCTCACCACAGACTGATGGCTCCCACATTTGGCCAAGTGCCAAATCTGGTGACCCAAGAGATCGAACAGCGCATGATCGAGTATTTAAAGCTGATACAGGTGAAAAAGGAACAGAATGTGATAGGCAATGGAGGTTCAGGCGCTATGGGATTGTCgccacatcatcagcagcatcaccagcaacagcaccaccagcagcagcagcaacaacaacaacagcagcagcaacaacaacagagacAACGATCTCCTCAAAGTCCTGAAATAAGTCCAAGAGAGGCTCTAAATGCATTGGAAATGTCCCGCGTAGCCTTGTGGCAAATGTATCACAACAATACCAGTCCACCTCCTGCTTCGGCAAATGTATTACCTGGCGCAGAAGCTCAACGTAGCGAAGCTCTCAACTTGTCGGATTCACCGCCAGGGGTCACCTCAATAAAACGCGAACGAGAGCGCGCTCCCAGTCCTGATGCGAATGAGCGTGACGATGAGTTTCAACACCAACCACCGCCACCAAAACGTGCCGGTTTTCCGGCCAGCTTCTACCTACCACCTGGCATGGCCGCTGCGGCGGCTGCTGTAAACTTCCACtataaaaacagcaacaatgaGCCACACGACTCCGATGCAGAGGCGGACGAAGAGCACGATGACGATGGTGACCACAACACCACTGCAGACACTTCTCATGACGATACTCTTGAACGGCAACAGTTGAACGGCATAACGGCTCGACCTCCCCGCCACCACGGCAGCAGCAGTAGCGTTCACAATGACAAGTCGGACGATTCTGCAATTGAAAATTCGCCTTCAACGTCGGCGGCGTCCGCAGGTAATGGACACATTTCGCCGGTGTCCACTAAGAAAATCCACTTATCCAAACAGCATATGCAAAATCAAACCTCCGAATCCAGTGGGGGATGCGCTGAGGGAGGTAACTGTGTAACAACTAACTCTTCACTTGGTCCTTTGGATGCCTTGAATTTGTTGTCGGGCATGCAATTCCGAATCACACGTAATGGTACCAACGAGAACGGAGAACAGCAACTGGTGGTTAACCTTGAATTAAATGGTGTCAAATACTCCGGGCTATTGATTGCGAATACAGCGAACTCAGCACGGGAGACCACAGCCACCAACACATCCGTAACAATGGATAACCATTGCGGCATCAACAATGTTGACACTGACAATACCACCTCCACCACCAACCATCGCACCACCGCACAATGTATTGAGGTGGCGCCCACAGACACAACGCTGCCCGATGCACATGAAATGACGGTGCGTGAGCCAGAAGCACTGCAAAAGACAAAGCACACAAATTCTACTCTGTCAAACGGCCCCAATGCAAACACCCTCAAGGATGCGCTAATAACATCATAG
- Protein Sequence
- MTRVGSRLNASMTSNGGDITAHEHATEMQMSHHHQFPPNHPLNALNNFMGMSGLHGIPSLQHNDVLEKLKMQVRDMKVGLMDQDYVAAHAAAFGANVMPTSINTAFSLPPTTMASFTHAAQTLAAQASNNSHLGTNATLVPPGGSTSMATNGGHNGNSNFSFTSPTAPNAKDVNPASNSSTSSETSNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHSQMQMPPMARPNLPGGMQQMSPLALVTHAAAANNQQAQAALQQAHHRLMAPTFGQVPNLVTQEIEQRMIEYLKLIQVKKEQNVIGNGGSGAMGLSPHHQQHHQQQHHQQQQQQQQQQQQQQQRQRSPQSPEISPREALNALEMSRVALWQMYHNNTSPPPASANVLPGAEAQRSEALNLSDSPPGVTSIKRERERAPSPDANERDDEFQHQPPPPKRAGFPASFYLPPGMAAAAAAVNFHYKNSNNEPHDSDAEADEEHDDDGDHNTTADTSHDDTLERQQLNGITARPPRHHGSSSSVHNDKSDDSAIENSPSTSAASAGNGHISPVSTKKIHLSKQHMQNQTSESSGGCAEGGNCVTTNSSLGPLDALNLLSGMQFRITRNGTNENGEQQLVVNLELNGVKYSGLLIANTANSARETTATNTSVTMDNHCGINNVDTDNTTSTTNHRTTAQCIEVAPTDTTLPDAHEMTVREPEALQKTKHTNSTLSNGPNANTLKDALITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -