Slun009769.1
Basic Information
- Insect
- Stomorhina lunata
- Gene Symbol
- -
- Assembly
- GCA_933228635.1
- Location
- CAKOFY010000565.1:4223-15139[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0017 0.12 13.4 1.0 1 23 123 145 123 145 0.98 2 13 2e-06 0.00013 22.7 2.3 3 23 390 410 388 410 0.97 3 13 7.1 4.8e+02 2.0 4.3 1 23 416 439 416 439 0.93 4 13 2 1.4e+02 3.8 1.3 2 23 547 568 546 568 0.95 5 13 0.0076 0.52 11.4 2.6 2 23 738 759 737 759 0.96 6 13 0.41 28 5.9 3.1 1 23 765 788 765 788 0.96 7 13 7.2 4.8e+02 2.0 0.1 2 23 823 845 822 845 0.94 8 13 0.0029 0.2 12.7 0.5 1 23 859 882 859 882 0.96 9 13 0.017 1.2 10.3 7.8 1 23 1098 1120 1098 1120 0.99 10 13 0.00068 0.046 14.7 0.2 1 23 1125 1147 1125 1147 0.97 11 13 0.079 5.3 8.2 9.2 1 23 1153 1176 1153 1176 0.94 12 13 0.082 5.6 8.1 0.8 2 20 1182 1202 1181 1205 0.90 13 13 0.58 40 5.5 4.5 1 19 1211 1229 1211 1234 0.92
Sequence Information
- Coding Sequence
- ATGAGTGACAGCAAGAAATTCACACAGGATTACACGATGGTGTGTCGGACATGTCTGCAAACGAATGTGGAAATGATAAATTTAAGCGCGCTCATCAGTGATAATGTTAATAAAGAAACTCCCAAAATATCCTATATGGAATGTTTAAAAATGTGCATACCCGTTGAAGAGACCTTAGATGTTGAGCTGCCGCATCGTATTTGTTTTGACTGTGCCTCCGCGTTGCAAGTGGCCTATTGGTTTGTGAAAAATGCTGGCCGGGCGCAGGAACTGTTGCTAATGAAATTAAGGCAATTCAAACGTAAAAGGCAACAAATGGAAATGGAGGCTGCGGCTGCCACGGAAGAAATTAAAAAGACTAAAAGATATCGTTGCAAAATATGCAATGTGAAAGTGGAAACCAAGAGATCACTAAAGGATCATGTTAAACTTCACTTGGATATCATTGTATACAACTGTCAATTATGTTCCTTTGAGATTAATAACCGCAACTGTTTGTCCGATCATTATATACAAAACCATGGCCTTGAACCTACAAAGGAACAATTGAAGCCAAAAACCAAGACAACAACGTCTAAAACTACGTTCGCCTCAACCACATCAACCAAATCAGTCATAAGCGCGAATCATCCGCAAATTTTGGAAGGCCTTACAAATGAACATTTTCAAATATTACCCAATGACACAACAACACCTGCTACATACGAAACATTTACAGTCTGCAACAGTGGCCCCATGCAAGTGTCCACAATTATAACAACAAGCCATCCGAATTTCAACACTATAACTGCACCTTTTGCTGCCTACGATGGTGATCTTAATAATGATCTTAGCATGGCTAATGAATTTATGGTTATGGCTGATGGCAGTCTTGAAAAGGTTTTAAACAAAGGTGTTGTCATCGAATATATAAATGCAACTAATGATAATAGCGGCAATATAACACTGGATAATGGCATAGTTTTAGATAATATTTTACAAGTGCAAAATATTGATAATACCGTAATGCTAGAGCCACAAAATGATATTGTGCAAATGGATGTTGATGATTTGATCATAGAGGATTCAGGTGATACAATAGAAGAACAACAAGAACCCATTCCTTCACCTCTTGATGAGGAAATAATACCGGTTACAATAATTGAACAACCTAAAAAGAAAATTATATGCAAAATTTGTACCAAAGATTTCACAACACAGGAACATTTAAAAAATCATATGTTAACGCACAATGAAATTCCCCATTTCTTTTGTGACCAATGTAAATTCTATACATTCTTTAAAATCGATCTGCAGCAACATTATAAAAGTAAACACAATTTACAACCGACTAATAAGCAATTACAACCCAAAAACCAGCAGAAACCCTTAAATGAATACTATGCATGTGATTTGTGTTTCTTTGAAGGTGATTGCAAGTCAGATATAAGAGCACATTACCGAGATCGACACAATATTGAAGCGAATGAAATCCATTTACAACCTACCCGAATAATTAATCCCAATTCCAGTTTATCACCGCTTACGGCTAAGGCAATGGCAGCTTCAATAGTGAATACAACACCATCAGCAACTACTTCCAAAAACATCAAAATACGATCCATTGAACCGGAAGTACCAGATTATCCTAATGGCTTAAATTGTCGTAAATGTAGTGAGGTTTTCTATTGGCGTAATAAACTATATGAACACTATAAAATGCACAATGCCGAGGAGGCGGCCCTTAAGCAAGAGAAACAATTGGTTAAAGTTCAAAATAAGACTTCAGCAAATCAATATCAAACAACCAGCAAACAAACTAAGGTCATGAGAATCCAAACAACAAAGCAAACAACTGCTTTGGAGTCTACAAACTCCTCATCAACATTTTCAAATATAGATACAACACTGTCCTTAAATATTGCTACACCCAATAATAGCACACTTAATTCTATTGCTCCCCTGACACCATCTTCCAGTTCCACCTACACATTACCCTCAGATGCCATACCACAAATCGTGGAAACCGAACTAACTATAGAAAATGATATGGATTTTGATTTTAATGCTGACGACGATGCCTTGTTTGGTGATTTTGATGATGATGTTGATGTAGAAAATGATTCGGATGATAATGATACGGAATATCGTAATGTTTTACTAACATCAGATGATGATTTTGATGATATGTTGCAGGAACAGAATAATCTTAATAACGGAGAACAGACGTCGTATTGTGCCCATTGTCAAAAGTCTTTTCTTAGTCAATATCAATTTGAAAATCACATGTTTGTTCATAGAGGGCTGGCTCCTTATCGTTGTGAACTGTGTACAAATCTGTATAATACAAAACGTTGTTTGGTACGTCATTACAAAGCTGTACATAAAAGTGTACCCACCAGGGATATGATCCAAGCTAAAGGCGATAAAGTATGTGAAGATAAAACTTCTTTGGATAACATGCAGTTTAAGGAAACAACTTCTTTGATGTGTGCAAAATGTCCTTTTGAATCTCCAGATGAAAACGAAATTAAATTACATATAAATTCTAGTCATAATATAAATGATGAATCCTATATAATGAAAAAACTCCCCTTTGAATGTCCCCGCTGTATACGATCATTTGCAAACAAAGTAAAACTTTTAAGGCATTTAGAACGGAATCACAGTTCGACACCTATTAATCAGCATCAAATACGTTTCGATAATAAAAACAATATAACATCAATTCCAGTAGCAAGTGGGAGCTCCTCAACAGCCGAAGTAGCTGCCGCCATAACCACCTCACAAGCCGCTACAACTGCAATAAATAACCATGTAAATATGATGAAAACAGAAAGTAGTGAAACAAACGCAAGTTGCGGATATCATGATAAATTCATTATACAAGAATCACAAACTCCAAGAAAACAACAACAACAACGACGACAATACCCATATAACATCTCCATTAGAAGCAAACTGTCAATTGAAGATGCCGTAGCACCCCATGATATTATGGGCCAATACCAAGAATCTAACAGCTCTACAGCAACCTTTTCATCCACAACATCATCAACAACAATTTTGGCTTATAATGAAACCTTTAACAACAGCACCGATACAACAGCCATTGCCAGCAGCATGCCTTCTACTTCCAAACGTTCCCAACAATACACAACAAACGCCTTAGATAACAATGAATTGGAGCAGCCCCTATTTAAATGTAATTTTTGCCTTTTAACTTGTTATAGCCTAGAAACGTTTAATCAACACAGCAAACGTGCAGACTGTCGTAAGTTTTATGTAACCAAGACTGGAAATCGAATGCTGTATGAGTGCGAAATATGTCATTGTAATTATAAGACTATTTATTTATTGAAACATCATCTAAAACGTCATATAGGTCGAAAATTTATCTGCTCCAGCTGTCCCAAAACCTTTATAAGTCAATTGGAATTGGATGCACATAAACGTGTACACAGCGGGGAAAGGCTTCACAAATGTGATGTCTGTACAAAATCGTTTCATTATGTTCATCATTTAAAGCGTCACAAGGATAGTGTACATTATGGTAAACGTCATGCGTGTACAGTATCAAATTGTACTCGAAAATTTACCACTTTGGCACAATTGAAGATGCATGTATGGAATCATAATGGTATTGTGCCCTATAAATGTCCGTTTTGTAATCGTTTGTTTAAAAAGAGATTGTTACTCCGTGAACATTGCTTTAAAATCCATAAAGTTAACCTGAGTGAAGAGGAGATGGCTAAAATCTTTCGCAATAGTTTGGGCTATACAAATCCACATGATTTCACTGTCACCATCGGCAATGGCAAAATGTTAAGGCGTGGCGATTTAGAAACTATGGGTGCTTCTGGTGTTATAAAATCATAA
- Protein Sequence
- MSDSKKFTQDYTMVCRTCLQTNVEMINLSALISDNVNKETPKISYMECLKMCIPVEETLDVELPHRICFDCASALQVAYWFVKNAGRAQELLLMKLRQFKRKRQQMEMEAAAATEEIKKTKRYRCKICNVKVETKRSLKDHVKLHLDIIVYNCQLCSFEINNRNCLSDHYIQNHGLEPTKEQLKPKTKTTTSKTTFASTTSTKSVISANHPQILEGLTNEHFQILPNDTTTPATYETFTVCNSGPMQVSTIITTSHPNFNTITAPFAAYDGDLNNDLSMANEFMVMADGSLEKVLNKGVVIEYINATNDNSGNITLDNGIVLDNILQVQNIDNTVMLEPQNDIVQMDVDDLIIEDSGDTIEEQQEPIPSPLDEEIIPVTIIEQPKKKIICKICTKDFTTQEHLKNHMLTHNEIPHFFCDQCKFYTFFKIDLQQHYKSKHNLQPTNKQLQPKNQQKPLNEYYACDLCFFEGDCKSDIRAHYRDRHNIEANEIHLQPTRIINPNSSLSPLTAKAMAASIVNTTPSATTSKNIKIRSIEPEVPDYPNGLNCRKCSEVFYWRNKLYEHYKMHNAEEAALKQEKQLVKVQNKTSANQYQTTSKQTKVMRIQTTKQTTALESTNSSSTFSNIDTTLSLNIATPNNSTLNSIAPLTPSSSSTYTLPSDAIPQIVETELTIENDMDFDFNADDDALFGDFDDDVDVENDSDDNDTEYRNVLLTSDDDFDDMLQEQNNLNNGEQTSYCAHCQKSFLSQYQFENHMFVHRGLAPYRCELCTNLYNTKRCLVRHYKAVHKSVPTRDMIQAKGDKVCEDKTSLDNMQFKETTSLMCAKCPFESPDENEIKLHINSSHNINDESYIMKKLPFECPRCIRSFANKVKLLRHLERNHSSTPINQHQIRFDNKNNITSIPVASGSSSTAEVAAAITTSQAATTAINNHVNMMKTESSETNASCGYHDKFIIQESQTPRKQQQQRRQYPYNISIRSKLSIEDAVAPHDIMGQYQESNSSTATFSSTTSSTTILAYNETFNNSTDTTAIASSMPSTSKRSQQYTTNALDNNELEQPLFKCNFCLLTCYSLETFNQHSKRADCRKFYVTKTGNRMLYECEICHCNYKTIYLLKHHLKRHIGRKFICSSCPKTFISQLELDAHKRVHSGERLHKCDVCTKSFHYVHHLKRHKDSVHYGKRHACTVSNCTRKFTTLAQLKMHVWNHNGIVPYKCPFCNRLFKKRLLLREHCFKIHKVNLSEEEMAKIFRNSLGYTNPHDFTVTIGNGKMLRRGDLETMGASGVIKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -