Slun018753.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stomorhina lunata
Gene Symbol
-
Assembly
GCA_933228635.1
Location
CAKOFY010003605.1:231138-236536[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.028 1.9 9.6 2.2 1 20 605 624 605 628 0.85
2 8 0.00012 0.008 17.1 3.6 1 23 633 655 633 655 0.95
3 8 8.6e-05 0.0058 17.5 2.8 1 23 666 688 666 688 0.97
4 8 0.00086 0.058 14.4 4.5 1 23 693 715 693 715 0.98
5 8 0.0013 0.088 13.8 0.3 1 23 721 743 721 743 0.98
6 8 0.00079 0.054 14.5 0.5 2 23 749 770 748 770 0.96
7 8 0.064 4.3 8.5 1.8 1 23 812 835 812 835 0.93
8 8 0.49 33 5.7 4.4 2 23 842 864 841 864 0.95

Sequence Information

Coding Sequence
ATGATAACTTGTCCGCTTTGCGGGAAGATACAACAACGGGGAAATGGTACTTTCTTTTCGGTACCAAAAGAAGAGGACAAACGAAAGAAATGGAGTGATGTATGTGGGACGAATATTAAGGCTAAAGGAAGAGTATGCCTGGAACACTTTCTACCATCTGCATATATAAAGCCGGGAAGAAATCCCATGTTAATGCCCTTTGCTACACCAACAATACAACTGTCGGATCAGGCTCCTATACCGGAGAAGTGCAACTTACCGGGAAAAAGTTGCATTTGTGGATGTTTAAAACCAAATTCCCTTTATAAATTTCCTAACAAAGTGTATGATGGAGATAGAAGAAACTTGTGGTTGGATTATTTCGGTATACAAGACCCCGATCTAGAGAACATTTATGCTTGCGAACGACATTTTTCCCCCAGTCAAAGCATTGGTGAAGGCATTCGTTTAGATGCTATACCAGATATACCCTGCATATTAAGGCTACCCAGTATAATTCAACAGACTAAGGTCAAAAAACATAAAAAGAAAAAAACTAGTTCAAAGCTGGAAACAAATCAAATAAACTCAAATGTTATTACCGCAACAACAACAAACGAAGCTCCTGAAGAGTCCTTGGTTTATGAAAATGAACTACAAGTAGTATTAGGAGAAAATTTAGAACAAAATTCCGTCTTAGAAATCCCCATACAAAAACCTGAAAGCAAGGAGTCTTTCACGCAAACAAATACACGTCTCTGCGGCTCTGTACAGGTATCAGAGTTTGCCGATGAATATCGTTTAAATTGTTACTTTTGCTGTGAAACATTTCCTTTGGAAAAATGGAAACTATTCATAACGCATTTAAATCAAAAACATTACGCTTATGAGGCAGCTTTTCATATACCCAAATATGTTTCAGATGATCACGATTATACGGCCATAGATAAACCTCGTTTTAGTTCAATCGATATTAATTTAAAGATCACACAAAAGGAAACGTTAATTATTGAGCCAAAAATGTTTCCCTATGTATTCGAGACACAGGACTCTTCAAATAGTCTCTTTGATGCTGTTATTTTAAATCCACTTTATTCTGGGGCAGAAGAAAATATTTCAGTTTTAAAAACAAGAGAAATCGACAAACAAAACTCTTTGTTAAAAAATGATCGAATAACATCGCCACCACCACTTTTGTTGCCAAAAGCAAAAGATTTTAAAATTAAAGTAAAAAGAAAAAACTCAGTTTCAAAGTCTAATGGAAATAAGTTAAAATCCAAGCAATCCTGTAATAAAACCACTTTAAATCGCTGCCTTAAGAGGACTATAACCGACTCTATTGATACGGATTCAATTAACAACACAGTTCTAGAACCAGTTCCAAAACCCATGGATATTGAAGTTTTTCAACAGAATTCTACAGAGCTTACTTATGAATATACTCCAAAGGATATAATCGACTTACTGCTGGACACTATGAAAAACTATTCGGTCCTGTGGCAGTTTGATTCGCTGCCATTTAATCAAGACTATTATGAAGCCATTGAAGAGTTGTGCAAGATTATCAATGAAACCTGGTCCCTGAATATAGATAATCTGAAAATGAGACGCAGTGTAAATCGTTTACTAAGATTTTACTTGTCCGTTTACCCCTTGCAGGACATAGAGAATATCAATCAATTTACCAGCTATTATGATAAATGTGCAGAATTTCTGCCCAAATCTGTGCATCAAATTGCCTACGCACGTTGCTCGCATTGCTATATGTGCTTTACTTGTGATTTTGATTTGAAAAGTCATCTCTTAAAGGAACAGTCTCAATTGCAGTGGCCTTACAAGTGCTTAGAGTGCAAGGAATGCTTTAGTGACAGTGATGAGTTTGAGTTTCACAAAATTTTGCCTCACTATCAGGAAGTTTTTCGTTGTGAAAAGTGTCCCAAAACATTTACTCGTCGTAATCTCTACAATCATCATGTGGCCAATCATCTCTTTAAAGAGAGTAAAGAACCGGGACAGCATAAATGTAGCCAATGTGATAAGGCCTTTAAATATAAAACCACTCTGGCCTTGCACATATTGTATCACGGAGAAAGAAAATTCAAGTGTCATCTGTGTCCCAAGTCTTATCATGTAAATGGAAAGCTTAAAAGTCATTTAAAAATTCACCGCAAGGAATATAATTTTATGTGTGAAATATGTAGTAAGGGATTTTTGGTGCAGTCGACCCTAGATAGGCATATGGATACACATACACAAGTCAAAGTCGTGTGTAATATTTGCAATTTGAGACTAAGGCAATCTAGTCTTAAGCGTCATCTACGTATGGTACATGTGGTCTCCTTGGGAACCAACGAATCCATACAAAAAAGACAACAATTTCATTATAGAAGACTGCTTTCGAGAAATGAAGGTCGTCTCACAAAGAAGTTAGCTCTCAAAAAGGAAACAATTTCTTATCAGTGCAAAGTTTGCAACATAGACTTTGAAAGTCAAAAACTCAAAATGAAGCACAACAAAGAATTTCATGGGGACAGAACCAAATGGTCTTGTAAACTCTGCAGCTCGTTATATAGTTTCAAACATACACTCAGGCGTCATTATCGCCTTAAACACAATTTATATCGCTATCAAATTTACAAGCTGATCGATCTTAATGAAAGCTCGGAATCTGTCTTGACCGTAAAACATGAAGATATAGAAACATTAGCAGAAACTTCTGCATCATATCGTCCAACCGTTAAGTGTAGCAAAAGTAATATTAAAATGGAGGAGTCTATTCATATTCCCGTTGATGAAGTGGAACGTATGCCTGCTGATACAATACAAGATGAAATAATGAAGGCAGCAGATCATATAAATGAACAAGAAATTAAAATCGACAATGATCATTATATGAATGATTTCTTTGAAAATCTTTTAAAGTAA
Protein Sequence
MITCPLCGKIQQRGNGTFFSVPKEEDKRKKWSDVCGTNIKAKGRVCLEHFLPSAYIKPGRNPMLMPFATPTIQLSDQAPIPEKCNLPGKSCICGCLKPNSLYKFPNKVYDGDRRNLWLDYFGIQDPDLENIYACERHFSPSQSIGEGIRLDAIPDIPCILRLPSIIQQTKVKKHKKKKTSSKLETNQINSNVITATTTNEAPEESLVYENELQVVLGENLEQNSVLEIPIQKPESKESFTQTNTRLCGSVQVSEFADEYRLNCYFCCETFPLEKWKLFITHLNQKHYAYEAAFHIPKYVSDDHDYTAIDKPRFSSIDINLKITQKETLIIEPKMFPYVFETQDSSNSLFDAVILNPLYSGAEENISVLKTREIDKQNSLLKNDRITSPPPLLLPKAKDFKIKVKRKNSVSKSNGNKLKSKQSCNKTTLNRCLKRTITDSIDTDSINNTVLEPVPKPMDIEVFQQNSTELTYEYTPKDIIDLLLDTMKNYSVLWQFDSLPFNQDYYEAIEELCKIINETWSLNIDNLKMRRSVNRLLRFYLSVYPLQDIENINQFTSYYDKCAEFLPKSVHQIAYARCSHCYMCFTCDFDLKSHLLKEQSQLQWPYKCLECKECFSDSDEFEFHKILPHYQEVFRCEKCPKTFTRRNLYNHHVANHLFKESKEPGQHKCSQCDKAFKYKTTLALHILYHGERKFKCHLCPKSYHVNGKLKSHLKIHRKEYNFMCEICSKGFLVQSTLDRHMDTHTQVKVVCNICNLRLRQSSLKRHLRMVHVVSLGTNESIQKRQQFHYRRLLSRNEGRLTKKLALKKETISYQCKVCNIDFESQKLKMKHNKEFHGDRTKWSCKLCSSLYSFKHTLRRHYRLKHNLYRYQIYKLIDLNESSESVLTVKHEDIETLAETSASYRPTVKCSKSNIKMEESIHIPVDEVERMPADTIQDEIMKAADHINEQEIKIDNDHYMNDFFENLLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01374126;
90% Identity
iTF_01374126;
80% Identity
iTF_01374126;