Slun004024.1
Basic Information
- Insect
- Stomorhina lunata
- Gene Symbol
- -
- Assembly
- GCA_933228635.1
- Location
- CAKOFY010000189.1:283409-287572[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00072 0.049 14.6 0.1 1 23 141 164 141 164 0.97 2 12 0.01 0.71 11.0 3.6 2 23 213 235 209 235 0.88 3 12 0.0019 0.13 13.3 0.6 1 23 374 397 374 397 0.93 4 12 0.36 24 6.1 2.3 2 23 447 469 446 470 0.94 5 12 0.014 0.93 10.6 0.1 1 23 546 569 546 569 0.91 6 12 0.0012 0.083 13.9 2.5 2 23 620 642 620 642 0.97 7 12 0.0002 0.014 16.3 1.0 1 23 754 777 754 777 0.97 8 12 8.2e-05 0.0055 17.6 0.1 1 23 826 849 826 849 0.95 9 12 0.0016 0.1 13.6 1.4 2 23 899 921 898 921 0.95 10 12 0.13 8.6 7.5 1.6 1 22 1001 1022 1001 1024 0.90 11 12 0.56 38 5.5 0.7 1 20 1076 1095 1076 1097 0.94 12 12 0.032 2.1 9.4 0.1 2 23 1179 1201 1178 1201 0.96
Sequence Information
- Coding Sequence
- ATGGAGAACTTGGAGCCTTGGAATATGTTTACTAATGATTTTATGCCAGATGAAGAGAATGTGAATGATGAGAGTGAAGCAGCCGGAGATCAAGGGGGCGGTGAAAATGTACCATTTTCTATACCCTCACCAGTGCAAGATATGCAGGTCAAAGAGGAGCCTCAAGATATTGCAGAAGAAATATTCGATGATGATAATGAAAATACACCATTTCATTTTCTCTCAGCCATGGGAGCCAGTAACAATGACGATAGTCAAATTCGAAATCCTGAAGATGACAATGCTCTGTTTGATTTCGGCTTAGAATCATCAAATTCTCAAAATCGTACCGTTTTCAATAAATCCTCTACAGGCGATACAAACTTGGCACCGGAAGATAAATATTACAGTTCCATGGTCAAATTTGAAGATGCTGTTATTTACATTTGTCCAGCCTGTGGTCATGAATTTAATTCTCAAGATGCCTGGAAAAATCACTTGAACGTAATACATCTCTTTAACACCCGGCGTGGTTTAAACTTTATACAACTAGATAAGTTGTACCATGAATGCATGGAATGCAACAAACGCATTGCTATGCACAGTATGGAAAACTTGCTGAAGCATAAATTTACTCATTTACCATATCGATGTAGCAAGTGTATGGTTTGTAAGAGACAATATAAATATCGTCAAGATCTTATGGTACATTTGCGTATGAGCCATCGCGATGATTTGGTGGAGCTTTTAAAAAAGGAACATAAAAATCCGAAAAATACTTCGACTCAGCCACAAACAATACGTTCAATTCTTAGTAGAACCGATGGAGGTGGCGGGAGTAGTAGTGGAGGCCAAGGTGGAATTGGATCCAATATATCAATTGGTGCGATTAAGCAAAATGCTACCGACCTTTTTGATAATATTGAAGTCAAAAATGAAGTTCTCAACGAGGATGAGGATGATACAATGGGCGAAGATAGTCAACCTCCACCAGCAAAAAGACCGGCTCGAGATTTACCTGCATTTCTTGATGATGGCTCAACTAATGGTTCAGCCAGCGACCAATACATGCCTCCTATCCGTAATAAAAAATCTCCAGTTGTGGATGAAATAGATAGTTCACTTGAAGAATATGTATTGTTTACATGCCCACAATGCGGAACAGAATGTGAGACACAGGCACAATGGCGTCAACACATTGAATTCGTTCATGAGTTTGGGACTAGTAGGGGTTTAAATTTTCGAGAGTTACTTAATCAGCAGGCTCAATGTATGGGTTGCAATGCGATTCTATCAAACTCTACCTTAGGCAGTTTACAAGCACATAAATTCAGTCATCTTCCACACAAAGAATGGATGAGTTGCAAACTTTGTTTCAATTCCTTTAATTCAAATCGTGATATTATTAAACATTTAGCATCCAGACATCATTTGGTATCGGATAATAATAGCTCTTCAGCCCAAAATAATGATGATGACAGCCAAGAAGCATTTGGTTTTGGCAAAACCGGCGGTGGCTTTGGAGGGGATGATTATGATGATGGAGATGGTGGAGTCGGTAATTATGGGGAATCCGATGGTAAAAATATAATGACAGGACAGGATTCCCAAGCAGCAAAGTTTGAAACACGCGACGTATTTGAACAGCATATAACCTATATTTGTCCAGCTTGCGGTAAGGAATATAATGATAAGAAAGTATGGCGTAAACATATTGTAGAAATTCATAAGTTAGGCGAATTGGAAAATTTAAATTTTGAAAGTCTCAATGATCGTCAATTGAAGTGTAGGGAATGTGATAAGATCATAACAAATGCATATGGCATACAAAATGCTCAGCAACATCGCATGACACACATGCAGTATAAATCTTTTGCCAAGTGTCGCTTGTGTCGCAAAACTTACACTGATCGGAAGGGTTTGATTAAACACTTGAGAAACACTCATAAACTAGGTGGCCGAGGAGGACCGTACGGAGGAGGGTTTGGACAAATAAATCCCGTGCCGCCTACATCAAGTTTTGGAGTTGGAGGTAGTTCTACCTTCAAACCTTTCATTAAAAAACCCTATAAGATAGCCCATTACCCGCCTAAAGAAATTGTTAGATTATCAAACTACACCTATGAAATTGTACATTTAATAGAAGACGATGATGATGACGATGATGTAACAGTTACTGGTGGCTATGATTTTGCTAAAGGTGATGCTCATTTATATAGAAATGATTCGCCATATAGTGGAACACAAAAAAGAATTAGCAGCATGGAACAAATAACTCGACATAAATGTGTCGACTGTGGTTCAATATTTCCCACACCGCAAGCCCTGCAGCATCATATTAAAAAAGAACATGACTTTGTTGACTATCAAAACTCTTCATCTAATCAAGGTGGCCAAAATGAGGAGCGATCAAATGATACTGATGACTTATTAGTACCCAGTAGAGATGTTGATGTTCGGCCCGAAGAACACATAACCATGGATTGCAATTTTATTTATTTGTGTCCACAGTGTGGTGTTGAATTTCGTTCGCAAGTTCAGTGGCGACGTCATATAAATATTGAGCATAACTTTGATAAAAGGGAATTCTTGGGATTTCGTGCTTTGGATAAATTTCGTTATCAATGCAAACAATGTAAAGATACTGTTACGAGCTCGAAACTTAAGGGACTTCAGGATCATAAATTTAGACATTGTCCTTACAAACAGTATTTGAAGTGTCTGCTATGCGGTCAATCGTATAATCACAAGCCAAATATGATGGCTCATTTACGTCAAAGACACAACATAGTAGAAGTGGCGGATGGTGGCGGAGGTTCTGCTACAGCAAATCCCTTACATCAGAGGCATTCATCAAATTCACATAATAATAGTTTAAATTCAAAAGATTTTAATGACGCACCCGCAAGACCTATACGAAATTCCGATCCTTCCGTTAATACTACCAACCGACCACCAGGTTTAAAGACCGTCGAAGATGTTATATCATTTCACAATGCAGTTGATCATGACTCTATCACGTACCATTGTCCTTCGTGCAATGAAATGTTTGATTCTCATGTTTTTTGGCGCAAACATATTGTGGATGAGCACAATTTGAATAGCAGGGAAGGTTTAAATTTTCGACAATTAGATGAACATCACTATATTTGCTTGCAGTGTTATAAACGTGTCACGGTTACCCACACCAAGGGTGCGATTGGCCAGTTGCAGTCACATAAATTTAGACATTTGCCATACAAATCATTCCGTTGTACCGCCTGCCAGGGAGAATTTGTACGCAAACAAATGTTTTTTAAACACTTGGATAGAAATACCAATAAGTGTTCAGGAATAAATCCTGATAGTGTTCACACTGATGCAGATGGCAGCATAGCTGCGAACGATGATGATGGTGGTATTGATATGAATGCTACCCTTACAGAATTGGCCAGTTCAGGCAGCACTTCCTCAATAACAAAATCCTCTTGGCCCACACGCTCATCACTGCCAGCCCAACCATCTAATGCATCTAATAGCGAATCAGCTACTGAAAATCAGGGTTGCTTTACTCTAACATGTCCACAGTGTGGGTCAGATTTCGAAACTACACGTGCTTGGCGTGAACATATAAATATTGAACATAATCTCAACAATAGAACAGTATTGAATTTCAGAAAAATCAATAACAAACTACACCTTTGTTTGGAGTGTAATGAACATGTCAATGGTCGCAAACTGCGGGATCTTCAAGTCCACAAATTTAAGCACTTACAATATGGTGCTTATCTACACTGTCGTTTTTGTTCTATGAAATATTTCCACATCAGCAATATGCAGGAACATTTGAAGAACAAACATCCCAATATGCTGCAAAAAATGAAAAATTATGATGATGATACGGTCACCATGGATGATGATGATGAAAGTAATATTGATGTCAATAATGAAGCTGATGTTGTATTAGATGGCGATGAAGAGGAAAGTAGTCCGGAAGACTACGTCGATATGGATTTGTTGGAGGCAGAAGCAGAAATTGAAGAAGTTGATCCCGATAATGTTGAATCTGATGAACAATATTTATTAGGCTAA
- Protein Sequence
- MENLEPWNMFTNDFMPDEENVNDESEAAGDQGGGENVPFSIPSPVQDMQVKEEPQDIAEEIFDDDNENTPFHFLSAMGASNNDDSQIRNPEDDNALFDFGLESSNSQNRTVFNKSSTGDTNLAPEDKYYSSMVKFEDAVIYICPACGHEFNSQDAWKNHLNVIHLFNTRRGLNFIQLDKLYHECMECNKRIAMHSMENLLKHKFTHLPYRCSKCMVCKRQYKYRQDLMVHLRMSHRDDLVELLKKEHKNPKNTSTQPQTIRSILSRTDGGGGSSSGGQGGIGSNISIGAIKQNATDLFDNIEVKNEVLNEDEDDTMGEDSQPPPAKRPARDLPAFLDDGSTNGSASDQYMPPIRNKKSPVVDEIDSSLEEYVLFTCPQCGTECETQAQWRQHIEFVHEFGTSRGLNFRELLNQQAQCMGCNAILSNSTLGSLQAHKFSHLPHKEWMSCKLCFNSFNSNRDIIKHLASRHHLVSDNNSSSAQNNDDDSQEAFGFGKTGGGFGGDDYDDGDGGVGNYGESDGKNIMTGQDSQAAKFETRDVFEQHITYICPACGKEYNDKKVWRKHIVEIHKLGELENLNFESLNDRQLKCRECDKIITNAYGIQNAQQHRMTHMQYKSFAKCRLCRKTYTDRKGLIKHLRNTHKLGGRGGPYGGGFGQINPVPPTSSFGVGGSSTFKPFIKKPYKIAHYPPKEIVRLSNYTYEIVHLIEDDDDDDDVTVTGGYDFAKGDAHLYRNDSPYSGTQKRISSMEQITRHKCVDCGSIFPTPQALQHHIKKEHDFVDYQNSSSNQGGQNEERSNDTDDLLVPSRDVDVRPEEHITMDCNFIYLCPQCGVEFRSQVQWRRHINIEHNFDKREFLGFRALDKFRYQCKQCKDTVTSSKLKGLQDHKFRHCPYKQYLKCLLCGQSYNHKPNMMAHLRQRHNIVEVADGGGGSATANPLHQRHSSNSHNNSLNSKDFNDAPARPIRNSDPSVNTTNRPPGLKTVEDVISFHNAVDHDSITYHCPSCNEMFDSHVFWRKHIVDEHNLNSREGLNFRQLDEHHYICLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFRCTACQGEFVRKQMFFKHLDRNTNKCSGINPDSVHTDADGSIAANDDDGGIDMNATLTELASSGSTSSITKSSWPTRSSLPAQPSNASNSESATENQGCFTLTCPQCGSDFETTRAWREHINIEHNLNNRTVLNFRKINNKLHLCLECNEHVNGRKLRDLQVHKFKHLQYGAYLHCRFCSMKYFHISNMQEHLKNKHPNMLQKMKNYDDDTVTMDDDDESNIDVNNEADVVLDGDEEESSPEDYVDMDLLEAEAEIEEVDPDNVESDEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259649;
- 90% Identity
- -
- 80% Identity
- -