Slun000415.1
Basic Information
- Insect
- Stomorhina lunata
- Gene Symbol
- -
- Assembly
- GCA_933228635.1
- Location
- CAKOFY010000014.1:1782397-1786702[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.01 0.68 11.0 4.2 2 23 222 244 221 244 0.97 2 11 0.0054 0.37 11.9 1.4 2 23 254 275 253 275 0.97 3 11 8.2e-05 0.0055 17.6 1.5 1 23 351 374 351 374 0.97 4 11 0.00092 0.062 14.3 1.0 1 22 381 402 381 402 0.96 5 11 0.38 26 6.1 0.7 2 23 412 434 411 434 0.91 6 11 0.1 7.1 7.8 1.0 1 23 469 491 469 491 0.97 7 11 0.00088 0.059 14.3 0.2 2 21 518 537 517 538 0.93 8 11 6.1e-06 0.00041 21.1 2.8 1 23 583 606 583 606 0.97 9 11 0.071 4.8 8.3 3.5 1 23 643 666 643 666 0.97 10 11 1.1 77 4.6 2.6 1 23 734 757 734 757 0.95 11 11 1.3e-05 0.00089 20.1 0.7 1 23 763 785 763 785 0.98
Sequence Information
- Coding Sequence
- ATGAACAATTCCAAGCTTCAAGAATGTTTTATAAATGGAATTCAATACAAATGTCGCACATGCTTTGATCCGGGACAGGCAGTTTACCCCTTGGCAAATGAATGCAGTGATGGAAAAGCTTGGCGTGACTTATTAAGGGATATTGCTCAATTACAGACAGACGATAACGATTTCCTTCCAAAGACTGTGTGCAACAAATGTTTAGATAAACTTATAAATTTCTATGATTTTATACTGCAGATCCATAGAGTGGATAAAAAATATGCGGAATTGTTGGGTACTTACAGTGATCCACTTCACTTGAAAGTTCAAGATGAAATTATTAAGATAGAAGATTCAACAGTAAACATTTCTTTGGAACAGCCTATTTTAGAAATAAAGTTGGAGGACGAATTGGTTGTTCCATTTGACGTTGTTTTGACCAGTTATAGTAAAAAAACAGAGCAGGACGAAGAAAAAAATGAAATAAAAGCTGAAAATCATGAAACGACTCCAATGGAATTGGAAAGTTTCTCATCGTCCGATGAAAGTGAAAATCTGTCTTTAAATGCCTTTGAAAAGGAAGAAGGATGCCACTTTGAAAATGATTCAGAAGAAAGCACGTTTTCATTAAAAGGAAGTTGCTATCGTCATATAAATATTGCTCACATAAACAAATCTATTAAATGCGACTTTTGTGAAAAAGAATTCAAGTGTAAAAACTATTTGAAACGTCACGTACGGAGAATTCATCCCAATACTTTACTTGCGAAATCTATACGTTGTGGTTTTTGTGAGCTATCCTTTGACAAACTACGAAGTTTGCACGAACACATGAAAATCCATGCAGATGGAAAAACGGACATAGATTTCGAAAACTGTCTTTATATAAAGACCTTTAAAAGTTTAAAACCCCTTGATTATCAACTTTTACAGCAGCAGATTCAAGAAGCCTACAATAAATGTCAAATAAGTATTTTTTATCAAGCAACTGATAAATATGGAAATGAGCTGGATATATCTGATAGCGATAGCGATACTGAGGATACAAATGTTGGAAAATCGAAAAGTTACATGTGTGAAATATGTAAAGAGCAATTTAAACGTCGAAAATTACTATTAATACATCAACAAAAATCTCACAATGACATAACTCTACCATACAAATGCATGGTTTGTAATCTTCCTTTTGTTAGTTACCATTTGCTGCAGAAACATTTAAAAAGGGACTGCTGGAATGAATATAGACGATTGCGATGTGATAAATGTAATGATCGTTTTATTTGGCCAAGTAATCTTTCAAAACATAAAGAACTAAAACATAATGTGTTGACAGAATCTTCCGATGACAAAAATATTTCTTCTAATGGGGAGCTGGCAGAAGTAGATTATTTGTTAGAACAACCTTCAACCGATGATCGCATATATTACTGCCTCATGTGTCCCACTACATTTTTCGAAGTCGAATCTTTTTACAATCACTTAAGTAGTCATCTTGTAGCACCTGAAGCTTTTATGACCGTCGAAAGTATAATAAATTCTACATGGTGGCCAAATGGAGATAAACAAATTGTGTGTAAAATCTGTAACTTAAGTTTTAAATATATTGCCGACTTAAGAAAACATTACAACAACTCATCGTGTGCTAAAAACAAAAGACATTCATTGAAAAATTACTCCATAACCAATCAAAATGGATTTGAGTTACATTTAGAATTCGATTCCGAAACTGACGAGGAAGCGGAGGATATCGTAACCATGTATCCGTACAAATGCATCATCTGCAATAAGACATTTAAGCGAAAATATCAATTGGCCCAACATCAGCGATCGAATCACAACTATGAACTGCTGGTGCTAAAATGTGATTTATGTGTTTTTAAAACAGTCTCTGAGaaagttctagattaccataaagtcacacaatgttttaatgcagaaaaagaatttaaatgtgaacagtgtcatttcaaatttatgtggcaagaaaacctggataaacatattttaaaattccatacttcaaatcatttggaaaaggcaTCAATTCCTTGTACGAGTACAAAAGGAGAAAAAATACACATATTATCAATAACTTGTGCAAACAATAAACAAAGTGATGGACCCAATAATTCGAAAAAGTCAATTAACAATGATGTACCATCATCATCATCAAATTTAAATGCTGCTAAAGAATCCACAATTATGACTGAAAAGCCCTTTAAGTGTAATCTCTGCACTTCGTCATATAAATGTGCAGAAGCACTAAACGATCACAAACGGGCTAAGCATCTCCACGAAAATCCTTTTCAGTGCAATCTCTGTGATAAATCGTTTAAAGGTTTGGCCGCATTGAAAGTACATAAGAACAAACATATAAATATTTTTAATTGCGAAGTcgcatatttaaaaaaacatcgcattTCAAAACATGAAATAAAAAATAAATAA
- Protein Sequence
- MNNSKLQECFINGIQYKCRTCFDPGQAVYPLANECSDGKAWRDLLRDIAQLQTDDNDFLPKTVCNKCLDKLINFYDFILQIHRVDKKYAELLGTYSDPLHLKVQDEIIKIEDSTVNISLEQPILEIKLEDELVVPFDVVLTSYSKKTEQDEEKNEIKAENHETTPMELESFSSSDESENLSLNAFEKEEGCHFENDSEESTFSLKGSCYRHINIAHINKSIKCDFCEKEFKCKNYLKRHVRRIHPNTLLAKSIRCGFCELSFDKLRSLHEHMKIHADGKTDIDFENCLYIKTFKSLKPLDYQLLQQQIQEAYNKCQISIFYQATDKYGNELDISDSDSDTEDTNVGKSKSYMCEICKEQFKRRKLLLIHQQKSHNDITLPYKCMVCNLPFVSYHLLQKHLKRDCWNEYRRLRCDKCNDRFIWPSNLSKHKELKHNVLTESSDDKNISSNGELAEVDYLLEQPSTDDRIYYCLMCPTTFFEVESFYNHLSSHLVAPEAFMTVESIINSTWWPNGDKQIVCKICNLSFKYIADLRKHYNNSSCAKNKRHSLKNYSITNQNGFELHLEFDSETDEEAEDIVTMYPYKCIICNKTFKRKYQLAQHQRSNHNYELLVLKCDLCVFKTVSEKVLDYHKVTQCFNAEKEFKCEQCHFKFMWQENLDKHILKFHTSNHLEKASIPCTSTKGEKIHILSITCANNKQSDGPNNSKKSINNDVPSSSSNLNAAKESTIMTEKPFKCNLCTSSYKCAEALNDHKRAKHLHENPFQCNLCDKSFKGLAALKVHKNKHINIFNCEVAYLKKHRISKHEIKNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -