Slun019312.1
Basic Information
- Insect
- Stomorhina lunata
- Gene Symbol
- -
- Assembly
- GCA_933228635.1
- Location
- CAKOFY010003624.1:1310181-1317525[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00019 0.013 16.4 2.9 2 23 91 113 91 113 0.96 2 9 0.0011 0.075 14.0 0.0 2 23 119 140 118 140 0.96 3 9 1.7 1.2e+02 4.0 1.2 1 20 181 200 181 202 0.90 4 9 0.021 1.4 10.0 0.1 2 23 701 723 700 723 0.93 5 9 0.00026 0.018 16.0 0.4 1 20 814 833 814 835 0.95 6 9 0.00092 0.062 14.3 4.1 1 23 843 865 843 865 0.98 7 9 0.00012 0.0079 17.1 7.1 1 23 871 893 871 893 0.98 8 9 0.00066 0.045 14.7 2.8 1 23 899 921 899 921 0.97 9 9 0.043 2.9 9.0 2.5 1 20 927 946 927 948 0.93
Sequence Information
- Coding Sequence
- ATGTTGGCTGCGGTTAAGATTAAAGAAGAGCCTCTTGATGAAATCTCTGATATGCAGGAAATATTTAAGCAAGAGGATGAAGCTTTAAGAAAGCAACAAATTAATGAATTTTCCGACAACTTTTTGGATCATCCGACGTCTGGAAATAATTTTCGCATTGTTGATGAGCAAGAGAGTATTATTACCGTTAGTGCAGCAGACATGAGGTCCGAAGATGAACTTCAGTTTATAGACTCCATCAATAATACAGATCCCAACAAATTCAAAGGAGTATGCACCAAATGCCTAAAAACCTTTACCAATCGTGGACAATTTATAAAGCACACCAGGCGCAATCATTGTATTACCAAACAAAAGTGTCCAGTTTGTCCGGTTACCTTTGTCGATGCTCCGTCTTTACTAAATCATTTAAGTTTACACCGAGAAAACCAATTCTTTTGTTCGCAACATTGTGGAGCAAATTTTGGCACATTGCCTTTGTGTGAGGAACATGAGCTCAGGGAACATAAATTGCAAGTTGCACCCAAAATCCGCTATAAACATTTCTGCTCCTTCTGTAGAGAGGGCTTTAAAACAGAACTTCTATTGCATGTACATTGGCTGCAACAGTCTCAAGGTTGTGGCAAACTAATGCAAGATATTGTCTTACATTCCTCTAGTGTTGCTAATGATTACAATCCTAATAATAAAAATTGCAAAAACCTTGTATTCAAACCGCAAATACATTCAACTACCACAAACTCTGTGTCCACCATACCCATAACAAAATTAAGACTAAAAGCTGCACCTCAATTAGCTATTCCTGCTACAGCAAACAAAAGACAGATAACGGATGATGGACAAAATGAAATGGAAATGGCCAATAAGCGTCATAAGTCTTTGGATGTTATTAAAAAGGAAGTGGAAACAAATCAATTGTCCTTCAATTTTGAAAATGAAGTTCAAATTAAAGAAGAACCTTTTGATGATTTTGAGACCAATTTAACTTCTAATTTAATCCCAGAGGTGATAATAAAAACTGAGGAAGAAGAAAAGACTCTAGATGATAATACTAAAATGCAATCCTTGGTTATAAACAATATGATAATAGGGCCTCAATCTACAGGAAAGTTTATACCCTTGGAATCATTGGTCTCCTCAGAAAATGTTAATAAATCAACGATAGCAAAAGAAGAAATGAAAACTTTTTCTATTAATAATTTAGTTAGAGCTAATATTAATGGTAAAGTAATTAATATGAATAACCAAAATTTGCCAGTATTGACAATTATTAACAATAACAACAATAATAGCAATATTATTAATAATAACAATAACAATTGCCTTAATTTGGGCGTTAAAACAGAGGGTAATTTGAAATTTTTAAAATTAATGCCAGCTCCCATGAATACGGGAAATAAACCTTTAAATAATATAACTTTGGGCAATTTAACGAACAGCTCTACTGGCAAAATAATGACATTAAAATTGGCCAATAAACCAGCAGTGAATATGAGTGATTTAAAACCCTTACCCAAACAAGGTTTACAAATCATTAAATTTCTTCCCAATACCCAGATAATGGGTTTAAAGCCAAACACTAACCTTGCGACTAATCAAGCACCTTTAGTTATAAAATTACAACCAAAACCGAATCCTGCTGCTCAAGCAACTTTAACCAAACCACCAGATTCTCCTTTAGTTGTAAACACCCCTAGCAAGCCAACAAATCCTATTGCCGATAAAACTTCCCCCACTGTTTCCATAAAACTTAATTCTCTTGAACAAAACACCACCATTGATGCCGAAGACTTTAAGAAACTCCAGGCAGAGGCTCTTATTAGAGCAGAGGAACAACGTAAGAATTTTTATATACCCAAAACTCGTTTAATGATCATCGAAAATATACCAGAGAAAAAACAATTAATCGATAGCATGAAACAGCAAATAGCTGAAGTTGAAACTAAAACCACGGAACAGATCCAAGGAAAACCGGCAGGAAATTATATTTTAAAACCACCATCCGATGAACCGAGCACTTTGTATTTGCCTGTACATACAACATTGGATGTGGAGTTGGTGGAGGCACGATATCAAAATCCAGATTATAATTATAAATGGATATGTCCCTATTGTTTAAAGGATTATGAAATCAAAAGCTCCCTAAGGGTGCATTTAGTTAAAGCGCATAATTTGAATACCAGAGATTTGCAAAAGATTAATGTGCAGGCGAAGCCTTATGTGTGTGAAGCAGAGGAACCTTCCGGAGAAGCTATAAAAAATCCTCAACAAGAAGACCTGAAATCTGATATAAAAGAAGAACCTTTTATACAAGATTGTGACTCACAGTCCTTGACAATATCTGAAACAGAATCCTTGACAACAATTGATTCTGCTGGTTCCACCGTTTCGCCAAAAACATCGAAGATTACGCCTGGAATAAAACAACCAAGACCACGTTATGTGTGTGATAAATGTGGACGTACTTGTTCCTCAAAAACTATGCTTAGTGATCATATCCTGGCTAATTGTAGTCGTGAACCCCAGTATTCTTGTAAGGAATGTAACAAGAAATTCTATTCACAGGGAACCCTACAATGTCATATGTCCATACACACGGGCGAATTGCCACACAAATGCAATTATTGTGAGAAACGTTTTAGAACCCGAGGACAAGTTAAGGTTCATCATCGAACGCATACAGGAGAAAGGCCATTCTTTTGCCAGGTTTGCTCTCAACGTTTCACTCATCGTGAAACTTTGATTGCTCATTTATCACGACACATTGGTATGAAACGTTACAAATGCTATGGCTGTGATAAACACTTCTCCTGCATTAGTGCCCTTAAAACTCATCGTGAGATACGTAATGATACCTGTGGCAAAGTGAAATTCAATCCTCGTGCTATTGGACCTCGTGTGCGTGTCATACGTGGTAATGTCATTTTTGAGGCTCAGCCTGAAATAAATCCCTACTTAAAGTCTGAGGATCCTAAAAGTGTTTTGTCTGAGTTACAAAATAATCAGTCACCCCTAACAGAAACATCTTGA
- Protein Sequence
- MLAAVKIKEEPLDEISDMQEIFKQEDEALRKQQINEFSDNFLDHPTSGNNFRIVDEQESIITVSAADMRSEDELQFIDSINNTDPNKFKGVCTKCLKTFTNRGQFIKHTRRNHCITKQKCPVCPVTFVDAPSLLNHLSLHRENQFFCSQHCGANFGTLPLCEEHELREHKLQVAPKIRYKHFCSFCREGFKTELLLHVHWLQQSQGCGKLMQDIVLHSSSVANDYNPNNKNCKNLVFKPQIHSTTTNSVSTIPITKLRLKAAPQLAIPATANKRQITDDGQNEMEMANKRHKSLDVIKKEVETNQLSFNFENEVQIKEEPFDDFETNLTSNLIPEVIIKTEEEEKTLDDNTKMQSLVINNMIIGPQSTGKFIPLESLVSSENVNKSTIAKEEMKTFSINNLVRANINGKVINMNNQNLPVLTIINNNNNNSNIINNNNNNCLNLGVKTEGNLKFLKLMPAPMNTGNKPLNNITLGNLTNSSTGKIMTLKLANKPAVNMSDLKPLPKQGLQIIKFLPNTQIMGLKPNTNLATNQAPLVIKLQPKPNPAAQATLTKPPDSPLVVNTPSKPTNPIADKTSPTVSIKLNSLEQNTTIDAEDFKKLQAEALIRAEEQRKNFYIPKTRLMIIENIPEKKQLIDSMKQQIAEVETKTTEQIQGKPAGNYILKPPSDEPSTLYLPVHTTLDVELVEARYQNPDYNYKWICPYCLKDYEIKSSLRVHLVKAHNLNTRDLQKINVQAKPYVCEAEEPSGEAIKNPQQEDLKSDIKEEPFIQDCDSQSLTISETESLTTIDSAGSTVSPKTSKITPGIKQPRPRYVCDKCGRTCSSKTMLSDHILANCSREPQYSCKECNKKFYSQGTLQCHMSIHTGELPHKCNYCEKRFRTRGQVKVHHRTHTGERPFFCQVCSQRFTHRETLIAHLSRHIGMKRYKCYGCDKHFSCISALKTHREIRNDTCGKVKFNPRAIGPRVRVIRGNVIFEAQPEINPYLKSEDPKSVLSELQNNQSPLTETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -