Slun018898.1
Basic Information
- Insect
- Stomorhina lunata
- Gene Symbol
- -
- Assembly
- GCA_933228635.1
- Location
- CAKOFY010003613.1:82376-88181[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.79 53 5.1 0.1 4 23 511 531 511 531 0.91 2 14 0.021 1.4 10.0 2.1 2 19 543 560 542 562 0.94 3 14 0.18 12 7.0 0.6 2 23 604 626 603 626 0.94 4 14 0.059 4 8.6 0.3 5 23 636 654 633 654 0.93 5 14 0.00049 0.033 15.2 1.8 1 23 661 684 661 684 0.96 6 14 6e-05 0.004 18.0 2.0 2 23 692 713 691 713 0.97 7 14 0.011 0.76 10.9 0.5 1 23 763 787 763 787 0.92 8 14 4 2.7e+02 2.8 0.3 1 23 830 855 830 855 0.95 9 14 0.019 1.3 10.2 1.4 1 23 867 890 867 890 0.96 10 14 5.8e-05 0.0039 18.1 1.9 2 23 896 918 895 918 0.96 11 14 0.00084 0.057 14.4 1.7 2 23 922 944 921 944 0.96 12 14 0.19 13 7.0 4.1 1 23 950 973 950 973 0.95 13 14 0.00053 0.036 15.0 0.7 1 23 978 1000 978 1000 0.98 14 14 3.5e-06 0.00024 21.9 1.9 1 23 1006 1028 1006 1028 0.99
Sequence Information
- Coding Sequence
- ATGACGGTTAATGTTTCCACAGCCTTCAGTTTTTGTTTATATTGTAAAATAACTTCTGCGGCAGACAGCGAGAAGGAATTTCATGAAATCTATGATGAAGTGGGAGTGGAACTACAATTACCCGGTTTAGTGGATAAATTTTTCCATATTAAAGCTGAAAATAAAGCTAAACAACAACTTTGTGATGATTGTGTTAATCGCTTGATAGAACTGTACGATTTGGAGGAACATGTCAGAGAAGAAAATGAAGCTGGCAAAGATTTGTTGCCGTTAACTAGTCCCGGAAGCTCAATAAATAAGACTACAAGTTTTAATGATGTATTAAATAAAGAATGCTCCAAAGAAAATGTTTTAAATTTACCAAATAACAAAGAAGAATATGATTTAAAATTGGAAAATAACTTTGAGGAACAGGAAGCTACAAACCTGCAAGATGCTTCACTTAAACAAAAAGTAGATGCTATTGGTAACGAGAACTGGCAAAGTAAGGAGATAGAAAATATTAATTTTGAAAATAACGACACCGATTGTTTAAGTGAAAGTCCCACCCAAACTGAAATTGATGCCCTAGAGCAAAACGTCCAAGAGAAATATAGCAACAAAAATGAATTCCTTTTGGTTGAAACACTCGAGGAGGAAACAAACGCTTCAACAGCACAATATAGTAAAGGGATTGTACTCAAGGAAGATAAACACAAAACTAAAGACAAAATAACAGCAAATTTACTTATTATCGAAATATCTTCTGAAGAATGCTCTGTAATATCGGTTGATGAAACGCAATCGCGAATGCGAAATGACACTAATAAAAATGAAATTATTAAGGAACAAGAATTTGTGCAAGAACAAATTTATGATGACAACAATGAAGACCTTATCGAGGCTTTAATAGATTACTCTACAAGCAACTCAAACAACGATGAACAAGTGGAACTAATTGAAGAAGAAGTGGATTTCGAAGGTAGCGAAGAGGAATTTGTTGAAGAAAATGAAAAAGTAAATGTTGAAGAAAACAAAGAAGTCGATGTTGAAGGTAGCGTGCCCATGGATGTTAATGAAAATGAAGATTTAGATGTTGAAAGAAAGTTTGCGGAGGTTTATTATGAGGAATTTTTAACAGTTGGTAATGACAAAAGCACTAAAAGTAGAACAATAGTAAATAATATGGAAAATAATCATTTGGAATTGGACGCACAATCTTTACATACAAATGATTCTGCTTACGATCTTACAAGTGTGTATGATATTGACACAGAACAAATTATTGATGACGATGCTGAGCATGAAGAAGATGCCTACTCCATAGATGAGGAGTACTTAGTAGAAGAAATTATTTGCTCTCAAGATTACGATAGTGTTAATTTAAATGAATATTTGGAAAAGGTTATTACAACAAAATTTGAGAATATCCCACTAACATGGGAAGTGGAATGTAATTTATGCCAGGATAAATATCATAAATTTGAAGATCTCTTAAATCATATGTGTATAAAACAATTTGAGGAAGATCAAATGTTCTTTTGTATCATCAAAGATTGTAAAGCAAATTTTGACAATTTACAAACGTTAGCAAGACATTTGATATTACAGCATTATGATAACTTGGATGGTCTTACTATTTATGGCAAATGTACAGAATGTCAAAAGACATTTTCTAGTATGACGGTATTAAATAAACACTCCTGCTGCCGTAGTATAAAAAAGAAGACTGGATTAAGAACTTATTGTCAATCTTGTGACATGGATTTTCAGTCCTTAAAAAGATATGTTTTTCATATGCAATTTCATCTAACAAAACATCGTCCAAAAGTTTGTCTATTATGTGGTATCTTATTTAATAACTCAAATGATTTCTTTGAACACACTCAATATAAGCACAATTCCGAATCTACAATGGCTTGTATAAACTGCGATCGCTTCTTTAAGGATAAAGAAGTCTTCGAGAGCCATATGGAGCTACATGAAGATGAAAAGTATCAGTTTAGCTGTACTAATTGTCCCAAAAAGTATACTACCAGATTTGGGCTACAACTTCACACAAACGTTTACCACAAAAATAAATCCAATGCCCTGAAATGCGATTTATGTAAAAAGGAATTTGTTAATAATAATTCATATCGTAATCATATGAAATCTCATGTTGTTGAGACTAAGATTGACACATTTGTATGCTCAACTTGTGGTTTAATATCAAATAATTTAGATGTAATTAAGGAACACACAGAATTGGATAATGATTCCCCTTGTTATGCATCAAACATAGAAGAAAAGTTATTAGGCGTAGCCTATACGTGTGAGAATTGTTCAATAGATTTTGAGACAATTAAACAACTTAAGGAACATCGTTTAACTGATAATCATAGTGATGATCTGTTTCATTGTGGTATGTGCTGTCAGGCTTTTAAGACACTACGCCACATGCGTAACCATTCCAATAATCATAAAGACTATGAAAAATGGCAAGAAGCTTTTCCAATAACACGATACTTTGTGTGTAACATTGGGGATTGTCAAGAGTTTTATCCCATCTGGACCACAATGTATTACCATAAAAAACGTCCTCATAAAAATCTAGAGAATTCCGTTAATCCTACAGATTTTAAATGCCCATTTTGCAATCAGTTATGTACCTCAAAAATGTCTCTGGCTGTTCATGTAGCTCGCAGCCACAATAATTCCAATATCAAGTGTTCTTATTGTAAACGAACCTATAGAACTGAAAAACAACTAAAAGCACATATTGAAAAATTTCATACAAGCCTTAAATGTGAAATTTGTTTTAAAGATTTTAAAAACAAACGTTACCTGGATTCGCACACTAAGATGATACATCTCAACATCAAACGTTATTTTTGCCAATATTGTCAAAAGGGTTATTTTCATAAAAGTGAAAAGGAGGTACACGAAAATAAATCCCATCCAGAATTTTCTTATAAATGTGAATTGTGCAATTTTGTAACCAACTATCCAAAATCACTGCAGATCCATATGGATAAACATAGTAATAATTTAAAATATAAATGTACAATATGTTCAAAATCATTTGGACGCAAACAGTTGTTGCAAGTGCATCTGAAAAGGCATGAGCAAAAACAGAAATACTTATGTTCCGAATATTCAACTGAAACTGAAAGTTGTGAGGCTTCATTCCTTACTCATACGCTTTTAAAAAATCATATTCAAAATAAACATCAAAACTCCACAAATCCTATGTTTACACAACAAAAGGAAGCCAACAAACGTAAAAGATCAGCAACAAAATGTTTTGAAATTTCAAATACTGAAGAGTCATCATTTGAGATAATACAGCCTGAAGATGACCTTGAGCTAGAGCAACGCTCTAAAGAAACAACGATAGATGTAAATGAACTCGAATATCCACAGGATACTATGGAGGCAACTATAGACCATGAAATGGAATCTGTGGAGTATGATAATGAATATGAAATATGTGTTTCAAATACTAAATTCTAG
- Protein Sequence
- MTVNVSTAFSFCLYCKITSAADSEKEFHEIYDEVGVELQLPGLVDKFFHIKAENKAKQQLCDDCVNRLIELYDLEEHVREENEAGKDLLPLTSPGSSINKTTSFNDVLNKECSKENVLNLPNNKEEYDLKLENNFEEQEATNLQDASLKQKVDAIGNENWQSKEIENINFENNDTDCLSESPTQTEIDALEQNVQEKYSNKNEFLLVETLEEETNASTAQYSKGIVLKEDKHKTKDKITANLLIIEISSEECSVISVDETQSRMRNDTNKNEIIKEQEFVQEQIYDDNNEDLIEALIDYSTSNSNNDEQVELIEEEVDFEGSEEEFVEENEKVNVEENKEVDVEGSVPMDVNENEDLDVERKFAEVYYEEFLTVGNDKSTKSRTIVNNMENNHLELDAQSLHTNDSAYDLTSVYDIDTEQIIDDDAEHEEDAYSIDEEYLVEEIICSQDYDSVNLNEYLEKVITTKFENIPLTWEVECNLCQDKYHKFEDLLNHMCIKQFEEDQMFFCIIKDCKANFDNLQTLARHLILQHYDNLDGLTIYGKCTECQKTFSSMTVLNKHSCCRSIKKKTGLRTYCQSCDMDFQSLKRYVFHMQFHLTKHRPKVCLLCGILFNNSNDFFEHTQYKHNSESTMACINCDRFFKDKEVFESHMELHEDEKYQFSCTNCPKKYTTRFGLQLHTNVYHKNKSNALKCDLCKKEFVNNNSYRNHMKSHVVETKIDTFVCSTCGLISNNLDVIKEHTELDNDSPCYASNIEEKLLGVAYTCENCSIDFETIKQLKEHRLTDNHSDDLFHCGMCCQAFKTLRHMRNHSNNHKDYEKWQEAFPITRYFVCNIGDCQEFYPIWTTMYYHKKRPHKNLENSVNPTDFKCPFCNQLCTSKMSLAVHVARSHNNSNIKCSYCKRTYRTEKQLKAHIEKFHTSLKCEICFKDFKNKRYLDSHTKMIHLNIKRYFCQYCQKGYFHKSEKEVHENKSHPEFSYKCELCNFVTNYPKSLQIHMDKHSNNLKYKCTICSKSFGRKQLLQVHLKRHEQKQKYLCSEYSTETESCEASFLTHTLLKNHIQNKHQNSTNPMFTQQKEANKRKRSATKCFEISNTEESSFEIIQPEDDLELEQRSKETTIDVNELEYPQDTMEATIDHEMESVEYDNEYEICVSNTKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -