Slun000336.1
Basic Information
- Insect
- Stomorhina lunata
- Gene Symbol
- -
- Assembly
- GCA_933228635.1
- Location
- CAKOFY010000014.1:589532-591535[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.23 15 6.7 0.9 1 23 259 282 259 282 0.86 2 9 0.049 3.3 8.8 3.0 1 23 289 312 289 312 0.93 3 9 0.00011 0.0073 17.2 0.6 1 23 320 343 320 343 0.95 4 9 0.014 0.93 10.6 0.4 3 23 354 375 352 375 0.94 5 9 5.5e-06 0.00037 21.3 1.5 2 23 382 404 381 404 0.93 6 9 6.3e-06 0.00042 21.1 2.3 1 23 412 434 412 434 0.99 7 9 0.059 4 8.6 0.4 2 23 442 466 441 466 0.94 8 9 0.089 6 8.0 1.6 1 23 472 494 472 494 0.93 9 9 5.7e-06 0.00039 21.2 1.9 1 23 500 522 500 522 0.99
Sequence Information
- Coding Sequence
- ATGAAATTATCTCTGGAAGATTTACGACAATATTGTCGAACATGCCTGGTTCAGCTAGATGTGGCATTAGATAACGGTTCCACAAAAGCTGTTGCCACTAAAAAACATCCGGAAGTGTATCAGCTATTACGGGTTTGTCTTGCGAGGAAAGGCACTGCAGAAGATGACAGATTATGTCTTTATGCCCCCTTTTTATGTCGATCCTGTTTCGATAAGTGGTTGGATTTCCTCAAATTTCAGCAATTGGCTGCTAAAACAGACGAACGGATTAGAGAGATATTGAATAAGGAAGTTTTTAAAGATGGATTTACTAATAATGACAATAAAAATTTAAATGAGCATTATATTGACACCGATACTTTAGGCGATTTACAGGAAGTAGAGAAATATGAAACATATTCGCCCTTTTTTATAAACGGTCATTTAAGTGACACCGATGAAAAAGAAAGTGCGAATGATGATCCCACACAACAAAATATGCCATTAGAATCTAGAGAAATAGACACATTTAAATGCCACGATTATTATAATGAATTTGCCAATTCCTGCTCAGATGTTGAAAATGGAAATGATTTAGAAAATAAAATAAAATCGAACTCAAAAGCCATAAAACCTCGTAAAAACAAAAAAACTAGAAAGTCATTGTACTCAGTGAAAAAAAGCTGTAAAGCCAGAAAATTATTAAAAAAATATGACGAAAACCATACACTACCACAAGAAGAAGAAAATGAATATAATACGCACCAGGACGACAATAACACAAAAAAAGTTCAGTATCAATGTGAACTATGCGATAAATATTTTTGGGAAAAGAATAAATATGATGGACATATGAAGCAAGTGCACGAGGGCATTAGGCGTGCATTTCTATGTGATCTATGCAATAAAGCTTATAGTCTGTACAAGACTCTTTTACAACATAAACGAGAATGCCATAGTGAAAAAGCGCAAAAAACATATAAATGTGACGATTGTGATAAAATATTCAAAACAGCTGTAATTCTGAAACAACATATAACCAATAAGCATTCCAAACAAAAAGAGGCAAAACGTTCTATTTGTGACCAGTGTGGTTTTATTGCAGCTCACCAATATTCTTTATCCCGTCATATAATCAACAAACACACTGAAACAGATCAAATAAAATGTGAACATTGCCCAAAGGTTTTTAAAACCCAATATTCTCTTAAATATCATGTGATGGGTAATCACAATCCTTCGAATTTGAAGCCATTTAAATGCTCTGAATGTGAAATGGGATTCACACGTAAAACATTATTAAATCAACATAAGCGCACCCACCTTAAGTACACAGAACGTATAAAATGCGACTTTGAGGGGTGTGAGGTTCGTTTTGTTAAACAGGGCGATAAAGCTCATCACATGCGGTTGGTGCATTTAAAAGTTAAACAACATATTTGTGATTTTTGTGGAGAGGCTTTTGGAGCCATGCAAACATTACGCCATCATCGATTTATACACACTGGTGAAAAACCTTACAAGTGCAATGTTTGTGGTCAAGGATTTCGCCAACGCACTGCAATGAAAACACATCGAAAAACTCATTCCGGGAAAGAAGCAGAAAGTCAAGAAATAATACATAATTTGCCAGAATTAAACTTGAGCTTAGTAAATACATAA
- Protein Sequence
- MKLSLEDLRQYCRTCLVQLDVALDNGSTKAVATKKHPEVYQLLRVCLARKGTAEDDRLCLYAPFLCRSCFDKWLDFLKFQQLAAKTDERIREILNKEVFKDGFTNNDNKNLNEHYIDTDTLGDLQEVEKYETYSPFFINGHLSDTDEKESANDDPTQQNMPLESREIDTFKCHDYYNEFANSCSDVENGNDLENKIKSNSKAIKPRKNKKTRKSLYSVKKSCKARKLLKKYDENHTLPQEEENEYNTHQDDNNTKKVQYQCELCDKYFWEKNKYDGHMKQVHEGIRRAFLCDLCNKAYSLYKTLLQHKRECHSEKAQKTYKCDDCDKIFKTAVILKQHITNKHSKQKEAKRSICDQCGFIAAHQYSLSRHIINKHTETDQIKCEHCPKVFKTQYSLKYHVMGNHNPSNLKPFKCSECEMGFTRKTLLNQHKRTHLKYTERIKCDFEGCEVRFVKQGDKAHHMRLVHLKVKQHICDFCGEAFGAMQTLRHHRFIHTGEKPYKCNVCGQGFRQRTAMKTHRKTHSGKEAESQEIIHNLPELNLSLVNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -