Slun009891.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stomorhina lunata
Gene Symbol
salm
Assembly
GCA_933228635.1
Location
CAKOFY010000575.1:196971-239605[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 7.6e-06 0.00051 20.8 1.9 1 23 361 383 361 383 0.98
2 8 6.1e-06 0.00041 21.1 1.1 1 23 389 411 389 411 0.98
3 8 3.7 2.5e+02 2.9 2.4 5 23 675 693 672 693 0.84
4 8 5.6e-08 3.8e-06 27.5 0.2 1 23 699 721 699 721 0.98
5 8 0.0017 0.11 13.4 0.9 1 23 731 753 731 753 0.98
6 8 0.064 4.4 8.5 0.5 1 23 944 967 944 967 0.93
7 8 1e-05 0.0007 20.4 5.0 1 23 1226 1248 1226 1248 0.96
8 8 1.5e-07 9.9e-06 26.2 0.7 1 23 1254 1276 1254 1276 0.98

Sequence Information

Coding Sequence
ATGTGTTCAGTTTTTCGCAATCGCATTAACTATCGTGGAACACCTGGTAGTAACTCATCCGGTAGTCCAACGACATTAACCAAAGATTTAGAAGCCGATAGTAATAATAATGACAACGAAATAATGTCAAGAAAAACCGAAAGTCCCCCAGAAGCCAGGGAAAGCAACAGTAAATCTCCAATTAAGCAGCTGGAAAACAATGAGTCCAATAAAGAGCCAAACGAAGACAATGAAAATGACGAGCGTATGTCAACAAAAGAGGAAGAGGAGGAAGAAGTAGAGGGAGATAAACTAAAGTCAAGAACGCTTAAAGACGAGGCTTTGGATCTATCGGTTCTACCTAATGGTCTAGCGACCAAAGGACATGTATCTCTGGAAGCTTTACAACACACCAAAGTAGCTGTAGCACAATTTGCCGCAACAGCTTTAGCCCAGACGCCCTATTTTGGTGAGGGATCCAATGATTTGACAACCATCTTAAATGTGCAAAGGCAACATTTAATGCAATTGCAATTTATACAGCATTTACAAAGTCAATTGAAGAGAAGAGATCACGATAGAGAGTGTGAAGAAGAGGAAGAAGAGCTGCAGGAAGATGAGGAGGAAAGGGAAAGAGAAGATCTAAGAGAGGATTTAGAGGAAGATGTTGACGAAGAGGAATTAAATGAGGAATATCTACAACAGGAAGAATTAGATTTAAGTCAAAGAAAATTGGAACAAAGGAAAACGTTAGATGAGGAAAAGAAAAACGGCTTAGATGTTTCTAAGTATAAGAGAGAAGAGAAAGAAAAGACTGATAAAAATGTTTTGAGTAAAAGTCCAAATGAACCCGAAGAGGATAAAGTGCAATCACCAAACTATCAGCCCCTATTAAGTGGCATCAGTTCTTCGTTAGCTTCGACTATTATAACCAATCATGATCCTATACCCCCGCCCCACGAACCCAATTGCCTAGAAATGCTGCAGCGACGTACCGAAGAAGTTTTAGATTCGGCTTCGCAAAGTTTGCATGCCTCTCAAATGCAAGAGGAATATGAGTATATTCAAAAGGATGGTCAAGGCAGAGGAGAGATCTTTAAGCATCGCTGTAAATATTGTGGTAAAATATTTGGTTCATTCTCGGCCTTGCAAATACATTTGAGATCGCATACCGGCGAAAGGCCGTTTGTGTGTAATGTATGTGGCAGTAAGTTTACGACCAAAGGCAATTTGAAGGTGCATTATCAAAGACATACACAAATTTACCCGCCTATATTGATGCCACCTGGTGTTGGGCCACCTCTGGAAATGCCTCAGTCAATGAGAGAGCCTTTGGGTGCACAAACACCCCATCATCATCATCACCATTCCCAACATCAGCCACCAACTTTGCCACCTCCTCCCCCTTCCTCAGTATCAGCTTTGAATAGCTTGAACAATATGCCCATTAGATTACCCTTTAGTGATAAGCCCTTAACAAGGGAAGCAGAGGATGATATTGAAATTCCTATGAATACCAAAGAATGTGAGGATAGTATAGAGAGTCAAGAAAAGAGCGGGTTGTCGCCCGAGTTAAATAAGCCTCGGGAAGAAGAACATCCTGAAGACCTTAGTAAGCCTTCTAAGGAGGAAGAACTAAAACCCAAACCTTTGGTAAGAGTTAAGACACCACAAGCTTTAATGGAACCAGCAGCAGAATCAAATATTGAAAAGCCCGACAGACCGGCCTTGTCCGTGACTCCCAAAAGATCTAATTCACAAAGAAAGCGTAGTTCTACGGCTGGTACCCCACCGCAGGAACTAAGAAAGATTGGCATGGAAACTGATTTACCCGAACATCATTTATCGAAATTATACAGGAGATCGTCCCTAAGTCGTAACAGTAGTTTGGAACATTTGTCCGGAGATTTTTGTCAAGTAGAACAATTTGTAGACAAATCATGGGAAGATCTTATAGAAATAGATACCACATCAGAGACCTCCAAACTTCAGCAATTGGTCGATAATATAGAAAACAAACTAACAGATCCCAATCAATGCATCTTTTGTCAAAAGGTAATGTCTTGCCGCAGTTCCCTACAAATGCACATAAGAACTCATACAGGAGAAAGACCTTTTAGATGTAAAATCTGTGGGCGGGCTTTTGCCACCAAGGGTAATTTAAAGGCCCACATGAGCATTCACAAGATCAAACCTCCCATGCGTTCTCAATTTAAATGTCCAGTTTGCCATCAAAAGTTCTCCAATGGCATAATATTGCAACAGCACATACGTATACATACCATAGATGATGGTTCGGGTGGCTGTGGTTCCCAGTTGGCGGGACAATCTAGTGAAATGGCTGCCGCTATAGCAGAGCATAACAATAGAATGAGGGCTCATATGGAAGCAGCCATACTGGAAGATCAAAATTCTAATAAATCTTTAGGAGCTTCAGAAAATCTAGACTTTTCTACTACATCCGAGTACTCGGGTCATAGATCGGAATCTTCACAGGGCGATTTTGATGAATACATGACCATGGAGAGCACCGATGATTCGAGAGAGAATTCGTCTTCTGTTACACCTTTGGACAAAAGAATCTCGGAAGATGGTGATGTTGAAAAATTGGATCATGACAGCGAAAGAGAAAGATCAGAATCGGCTGCTCAGGCCATGGATCTAACATCTCGAAATGGTTCGCAACAAACACAAAAAGCTTTAGAACACCTACCCCATTTAATGGGAATGCCTCATAATCTTTGGTTAATGGCGGCGGCTAGAGAGGAAATACAAAATCTGGGAAATCATGGAAAGTTTCCATTGTTGCCATTTGGACCTTTAGGATTTATGGGTCTACCACCTCAGGCCCATATCTGCCAATTGTGCTTTAAATTATTTCCGAGTCCTGCGGCATTGGAAACACATTTTCAAAATGATCATACCAAAGATGTTGGCGCTAATGCTGCAACTGATTTGGCACCTGCATCGGTACCGAATTCATTGTCGTCGTCATCATCAATATCTTTGGCTACAAACTCCTCGTCAGGAACGACTAATGCCAATGCTAATGATGGTAATAATGCGGATTTAGTGGCATCAGAAAATTTTGATAAAAATTGTGATACTGTAGCTGAGACATCGACGGGATTACCGTTCAATAATAAGGTAAGTGAACAAAGAGATTTGATTACAAATCTTAAGCTTTCTTTGAATCCCAATTTATTTCCCAAATTTCAAACATCCTCCGAGGAAGATCAAAATTCCCGTAAAACTCCCTTTGAACGCCGTAGCAGTAATAGTTATGATGAAGTTCGTGAGATGTCGAATAAAATGCATGATTTGGAACCTCTTAAAAATCACATTAAGTCAGAACCTTATATAGATAATGAAGATGCTGCGGCTAAGTCTCCCCATATTATCGATGATATGGACGATGATGATGATGTATTCCGAAATTCCTCTACACCTCCTAATGTCTATACACACCACAATGCCGTTTTGAATCCACCCCATCCTGATAACTCAGAGCATTCTCTGATGAAAATGCAAATGCTAACAACAATTCCTCATCAATTTTCGACCTCTCATCATCATCCCTCGATGCCCGGACACATAGAAGCTCATCGTTTTCCAGCCACTCCTCTCGATTTTCAACAGGCCCTGATGTCTGTGGGCCCGCCCACATCTAGTCTAGATCCTCCTGTAAATAATAAGCATTTCTGTCATATCTGTCGTCGTAATTTCAGTTCGAGTTCGGCTCTGCAGATACACATGCGCACGCATACGGGCGATAAACCGTTTCAGTGTAATGTTTGTCAGAAAGCCTTCACCACCAAGGGGAATTTAAAGGTTCATATGGGCACTCATATGTGGTCAAATCCTACTTCACGTAGAGGCCGTCGCATGTCTTTGGAATTGCCTATACATCGGCCGGGAGGTAGTTTAGCGCCAGAGTCGGAATTTTTGCCAAGACGCCCGGATATATTCTTTCCATATCTGCCGCCTTTCTTTAACGGCTTGCCGCCAAAGACTATCTCCTCTTCTTCCACTCTTTTCAAACAGCCTGGAGATCTAAACTCAGCGCCACCCTTTCCGCCACACATAGCACCACCACATTTAGCCAATGGCTCTAATGGACCACCCAAATATCCTCCCGGCCTACCCATGGGATTTCCACCATTTCTACAGCCTCCCTACAATTTCAATCCAATGCTAAGTCAATCAACCTCGTCATCAACTTTAGAACGTCAGACGCATGCAAAAACTCCTCAGGGTTTAGAGCGTGAAGAGCAAGAAGAACCAAAGAATCCAAAACATTCATCATCACCCAAACACCACAACACACATAGGTCGGTCGATAAGGCCGATTCGCCACCGATCTCGACGGCCTGGGATCCAATGATAAAAATTAAAACTGAAAACAATCAAAATGATATTAATCATCTGGTAGATCATAGTGCAGAGTGTAGTAATCAAGATTAG
Protein Sequence
MCSVFRNRINYRGTPGSNSSGSPTTLTKDLEADSNNNDNEIMSRKTESPPEARESNSKSPIKQLENNESNKEPNEDNENDERMSTKEEEEEEVEGDKLKSRTLKDEALDLSVLPNGLATKGHVSLEALQHTKVAVAQFAATALAQTPYFGEGSNDLTTILNVQRQHLMQLQFIQHLQSQLKRRDHDRECEEEEEELQEDEEEREREDLREDLEEDVDEEELNEEYLQQEELDLSQRKLEQRKTLDEEKKNGLDVSKYKREEKEKTDKNVLSKSPNEPEEDKVQSPNYQPLLSGISSSLASTIITNHDPIPPPHEPNCLEMLQRRTEEVLDSASQSLHASQMQEEYEYIQKDGQGRGEIFKHRCKYCGKIFGSFSALQIHLRSHTGERPFVCNVCGSKFTTKGNLKVHYQRHTQIYPPILMPPGVGPPLEMPQSMREPLGAQTPHHHHHHSQHQPPTLPPPPPSSVSALNSLNNMPIRLPFSDKPLTREAEDDIEIPMNTKECEDSIESQEKSGLSPELNKPREEEHPEDLSKPSKEEELKPKPLVRVKTPQALMEPAAESNIEKPDRPALSVTPKRSNSQRKRSSTAGTPPQELRKIGMETDLPEHHLSKLYRRSSLSRNSSLEHLSGDFCQVEQFVDKSWEDLIEIDTTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTIDDGSGGCGSQLAGQSSEMAAAIAEHNNRMRAHMEAAILEDQNSNKSLGASENLDFSTTSEYSGHRSESSQGDFDEYMTMESTDDSRENSSSVTPLDKRISEDGDVEKLDHDSERERSESAAQAMDLTSRNGSQQTQKALEHLPHLMGMPHNLWLMAAAREEIQNLGNHGKFPLLPFGPLGFMGLPPQAHICQLCFKLFPSPAALETHFQNDHTKDVGANAATDLAPASVPNSLSSSSSISLATNSSSGTTNANANDGNNADLVASENFDKNCDTVAETSTGLPFNNKVSEQRDLITNLKLSLNPNLFPKFQTSSEEDQNSRKTPFERRSSNSYDEVREMSNKMHDLEPLKNHIKSEPYIDNEDAAAKSPHIIDDMDDDDDVFRNSSTPPNVYTHHNAVLNPPHPDNSEHSLMKMQMLTTIPHQFSTSHHHPSMPGHIEAHRFPATPLDFQQALMSVGPPTSSLDPPVNNKHFCHICRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWSNPTSRRGRRMSLELPIHRPGGSLAPESEFLPRRPDIFFPYLPPFFNGLPPKTISSSSTLFKQPGDLNSAPPFPPHIAPPHLANGSNGPPKYPPGLPMGFPPFLQPPYNFNPMLSQSTSSSTLERQTHAKTPQGLEREEQEEPKNPKHSSSPKHHNTHRSVDKADSPPISTAWDPMIKIKTENNQNDINHLVDHSAECSNQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00200111;
90% Identity
-
80% Identity
-