Slun011199.1
Basic Information
- Insect
- Stomorhina lunata
- Gene Symbol
- VEZF1
- Assembly
- GCA_933228635.1
- Location
- CAKOFY010000712.1:109002-113455[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00051 0.034 15.1 1.6 3 23 110 131 109 131 0.95 2 17 3.9 2.6e+02 2.9 6.5 1 23 137 160 137 160 0.96 3 17 0.00018 0.012 16.5 3.0 2 23 168 189 167 189 0.96 4 17 0.0011 0.074 14.0 1.6 2 23 359 381 358 381 0.96 5 17 0.34 23 6.2 3.0 1 23 388 411 388 411 0.98 6 17 0.0046 0.31 12.1 4.5 3 23 420 440 418 440 0.95 7 17 3.7e-06 0.00025 21.8 1.4 1 23 446 468 446 468 0.97 8 17 0.8 54 5.0 1.1 2 23 665 687 665 687 0.95 9 17 0.022 1.5 10.0 2.8 1 21 693 713 693 717 0.92 10 17 0.00014 0.0093 16.9 3.3 3 23 724 744 722 744 0.97 11 17 0.0027 0.18 12.8 3.0 3 23 750 771 749 771 0.94 12 17 0.18 12 7.1 2.4 1 23 845 868 845 868 0.96 13 17 4.8 3.3e+02 2.6 4.2 1 19 874 892 874 899 0.92 14 17 0.00013 0.0087 17.0 0.7 2 23 905 926 905 926 0.97 15 17 0.0026 0.17 12.9 0.6 2 23 931 953 931 953 0.94 16 17 0.00013 0.0091 16.9 4.9 1 23 960 982 960 982 0.98 17 17 4.4e-05 0.003 18.4 1.5 2 23 989 1010 988 1010 0.97
Sequence Information
- Coding Sequence
- ATGGCTTATAAATTGAAATCCACACCAAAGGGGTCACCTGCAAAAACTAAAAACCACAATAGGTTTAATGAGGAATCATTTGTCCAAGAATACAATGACGTTTCTCGAGCCTTTAATTACGACAATGATGAAGAGGAAGAAGAAGCCGAGTTTATAAGTGCTGATAATTCTCAGGAAGAAGAAGATGATTCTTACTGGGACAGCAGCAATCTTTTGGACATTCTACATGTTGAAAGTGCTGATGATGACATTGAAGATAGTTCGGAGCAAAAACAACATAATAGACCCAGAGTTTATAACAGGAAACATTACAATATTGAGAACTTATGCGGAGTTTGCCATAAGACATTCGAAGATCAAAATGATCTTTTTAGACATGCCAAACAATATCATCCCGATGCCAAAGTATTTAAATGTCAATACTGTGCAACTTTCTTTTCCAAATTGAAATCCATATCGTCGCATTTCAAAAGATGTCATGCCCATTTGGCTGATACCAAGCCTTGTGGCTATTGTCACAAGACGTTCTATTCTCAGTTTCAACTGGATCGTCATAGACAAATACATTTTGCTGAACAAAGGGAGCAGAGAAAAGAATTACCAGCGGTCGAAAGGAATGAACGTAACAGGCAAACACGTACTTCTGAACAAAGGCAGCAGTTGAATGAAACACTGGCTGCTAGAAGGATGGAACCCCAAAGGCAAACACATATTTCGGATCAACGACAGCAGATGAATATTTCGAAACAAAGGGGTCAGATGAAAGAACTAGCAGAAATTGCCAGGACGGAACACCACAAGCAAACTCATATTTCAAACCAAAGGGAACAAATAAAAAAATTACCAACGCAACATGAAAGGCAAACTCAAATTTCAAACCAAAGGGATCAAATAATAAAATTACCAGTTGTCGGTTCAATGGAGCATCAAAGGGAACTGATGAATATAGATAGGGAGCTGAAGATGAATAAATTGCCAGTTAAAAGAAAAATTGAAGATATTAGTAAGGAGACTGTTGTAAATGAGGATGAGCAATTCCAACAGCGAAAAGGCAAAACTTATTCAATTGAAGATAAATGTGCTATATGTCTGAGGAAATACAAACATCAAAAGGATCTTATAAGACATGTTCGACAAGCCCATGGTGAGGATGCTAAAGCATACAAATGTTTATTTTGTTCCACGCTATTTTCCAAATTGAAATCAATTACGAACCATTACAAAAGAATTCATTCCAAAATATCGAAAAGAAAATGTTGTGACTTTTGTGGTAAGTCATTTTTTACACAGTTTTTGCTAGATCGTCATAAACTATCGCACACCGAGGATAGGCCATTTGATTGCAGTATGTGTGATAAATCTTACAAATATAAAAGGAATTTAGATGTGCATATGAGAATTCATGAAAAAGATGTTGATAAATCCGGTAATAACATAAATATTGAAGATTATTATGAAAGTGGCGGTTTCAGCGAAAACAATGACGACATAGAAATGCTATCAAATGATGAGTTTGGTGAGGATGAGGAAGACTCTATATTACCAGACATTGATTATAGTCTGACTAATGATAGAATTATGTTTGCCGAGGATGACTATTATGAAAATGATGATGAAGACGATGATGAAGAATGTCAAAATGATGAACAATATCAATTGAACAGAGATAAAGAAAGTAATTGTAAAACTGTCCCACGAACGCAACAGAAAACTCATCAGAATCATAATGAACAAACAGCGGTCATTACTCTCGAAGATGAAGAAGAAGTACCCACGAAAGATCATGACAATAGTAATACTTACTTTATCATAGATGAATTCAAATCAGATTCTGAAGAAAATGGTAATGTAGAGAAACAAATATTGAAATCAACATCATTAAAGTCAGATTCCGAAGAAAATGATAACGTAGAGAAAAAAATATTGAAATCAAAACCTGCTTCTGCATCGAAAAAGCAACCTAAAGGAATGTTACAGGGAAAGGTACGAAATTATTGTAGCATTTGCTGCAAATACTTTGTTGATCCTCAAACAGCAATCAAGCATCTGAGAGCGAGACATCCTGAAGTAAATTTCTATAAATGTCATCATTGTGATGACTCTTTCTATAGTCTGAATTCCTTATCGCTGCATATAACAGAAATGAATCATCCTCAAAAACGTCAAATTTGTAAACATTGTCTTAAGTCCTTTGATCGCAGATATGATTTGGGACGCCATTTGAAAACTCACATACCTACGAATCACTGTAATATGTGTTCCAAAAGCTTTACATACATGAATCAATTAAAAAGTCATCAAGCAAACGAACACAATGTCGAAGGGGAGAAGGAACAAAACAATTCGGAGAATATGATTACCGATGAAGGTTTCGATTTGGAGAACGAAGAAGTAGAAGAGGGCTCGATGGAATATTCAGAAGAAGAAACACCTGTCGAAACGTATAATTTAGAAAACAATGATGACTTTGAAACAGAAGACAATTCAAATGACTATGATCATTTAGTAACGGAATCTTCTACAAGCAACACTCACAAGTGTGGCATTTGCATAAGCACCTTAAGTAGTCGTCGAGCTTTAACCAAACATTTGCGTCGTAAACATCCTGGAGTCATGTTCTTTAAATGTCATCACTGTGATGATATTTGCTATAGCCTGGAATCACTGTCGCAGCACAATAGCGAAATGAAGAATCACAGACAAAAAGAAAATGTTTGCGAATATTGTCTGAAGTCATTTGATCGTATGATTGATCTAAGGCGCCATTTAAAGATGCACGATTTAGCACGTCAGTGCGATATATGCTCCCAAATATTTAATAATTTTGATCAATTAAAAGTACACAAAGATAAGGTCCATGCAATTGTTGATAACAACTTTTATTGTAGTCATTGTCCCAGAACTTTTCGGCGTGAGTGTGATTTGGCTAGTCACACTCGCATACATGACGGAAGACGTGTTAAAACCTGTTCAATTTGTGATAAAGTTTACGAGAGGAAAAGAGAATTTATGAATCATCTAAAAATGCATAGATAA
- Protein Sequence
- MAYKLKSTPKGSPAKTKNHNRFNEESFVQEYNDVSRAFNYDNDEEEEEAEFISADNSQEEEDDSYWDSSNLLDILHVESADDDIEDSSEQKQHNRPRVYNRKHYNIENLCGVCHKTFEDQNDLFRHAKQYHPDAKVFKCQYCATFFSKLKSISSHFKRCHAHLADTKPCGYCHKTFYSQFQLDRHRQIHFAEQREQRKELPAVERNERNRQTRTSEQRQQLNETLAARRMEPQRQTHISDQRQQMNISKQRGQMKELAEIARTEHHKQTHISNQREQIKKLPTQHERQTQISNQRDQIIKLPVVGSMEHQRELMNIDRELKMNKLPVKRKIEDISKETVVNEDEQFQQRKGKTYSIEDKCAICLRKYKHQKDLIRHVRQAHGEDAKAYKCLFCSTLFSKLKSITNHYKRIHSKISKRKCCDFCGKSFFTQFLLDRHKLSHTEDRPFDCSMCDKSYKYKRNLDVHMRIHEKDVDKSGNNINIEDYYESGGFSENNDDIEMLSNDEFGEDEEDSILPDIDYSLTNDRIMFAEDDYYENDDEDDDEECQNDEQYQLNRDKESNCKTVPRTQQKTHQNHNEQTAVITLEDEEEVPTKDHDNSNTYFIIDEFKSDSEENGNVEKQILKSTSLKSDSEENDNVEKKILKSKPASASKKQPKGMLQGKVRNYCSICCKYFVDPQTAIKHLRARHPEVNFYKCHHCDDSFYSLNSLSLHITEMNHPQKRQICKHCLKSFDRRYDLGRHLKTHIPTNHCNMCSKSFTYMNQLKSHQANEHNVEGEKEQNNSENMITDEGFDLENEEVEEGSMEYSEEETPVETYNLENNDDFETEDNSNDYDHLVTESSTSNTHKCGICISTLSSRRALTKHLRRKHPGVMFFKCHHCDDICYSLESLSQHNSEMKNHRQKENVCEYCLKSFDRMIDLRRHLKMHDLARQCDICSQIFNNFDQLKVHKDKVHAIVDNNFYCSHCPRTFRRECDLASHTRIHDGRRVKTCSICDKVYERKREFMNHLKMHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -