Basic Information

Insect: Stomorhina lunata
Gene Symbol: -
Assembly: GCA_933228635.1
Location: CAKOFY010000005.1:140610-143387[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.6e-05 0.0024 18.7 1.2 1 20 281 300 281 304 0.90

2 8 0.00058 0.039 14.9 0.7 1 20 320 339 320 342 0.93

3 8 3.5e-07 2.3e-05 25.1 0.2 3 23 347 367 345 367 0.96

4 8 0.00016 0.011 16.7 1.0 1 23 373 395 373 395 0.98

5 8 5.2e-06 0.00035 21.4 0.8 1 23 401 423 401 423 0.98

6 8 0.0013 0.088 13.8 2.3 2 23 430 451 430 451 0.91

7 8 1e-05 0.0007 20.4 1.2 1 23 457 479 457 479 0.99

8 8 1.2e-07 7.9e-06 26.5 1.3 3 23 487 507 485 507 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.6e-05	0.0024	18.7	1.2	1	20	281	300	281	304	0.90
2	8	0.00058	0.039	14.9	0.7	1	20	320	339	320	342	0.93
3	8	3.5e-07	2.3e-05	25.1	0.2	3	23	347	367	345	367	0.96
4	8	0.00016	0.011	16.7	1.0	1	23	373	395	373	395	0.98
5	8	5.2e-06	0.00035	21.4	0.8	1	23	401	423	401	423	0.98
6	8	0.0013	0.088	13.8	2.3	2	23	430	451	430	451	0.91
7	8	1e-05	0.0007	20.4	1.2	1	23	457	479	457	479	0.99
8	8	1.2e-07	7.9e-06	26.5	1.3	3	23	487	507	485	507	0.96

Sequence Information

Coding Sequence: ATGTTGAAAGTAGCACAACCTACGGGCAATGCCTTCCGTAACTTAAAATGTGGTGAAATATTTTGTATTTCTCCAGTCGTTTACAATGTCACTTGCTGCCTGTGTCAAACCAAAATGCACCTGGACCAATTTCCCAGTCACTTTCAAATCCAGCATTTGACATTGGCCGAAGAAAGCATTAACTTGGAAGAGTTGGATCGTAAACGAAGGGCTAAATTGGCTAAAGATGCCAGTTTGCAAGATAATATGAATATAAAAGAAGAGGATCCTGAAGATGATCCCATTAAACAAGAAGTTATGTTTGTAAAGGTGGACGATTCAGATGAAGATGGAAATTGTTTGCAACAACTTTTAAGTGGCAGCGAGAATGCACTAAATAAGTCTGAGGATTTGGAACCAGACAACGATTCAGATGAAGATGATAAATGTTTACAACAGCTTTTAAGGGGCAGCGAGGACGCAACAAATGATTCTGAGTGTGAGGAACAGGAATTTCAAAGTCAGCCGCAAAGTGATGGTGATGACTTTAAAGTGGAACTGGAAGTGGAGATATTAGAGCGAAAACCAAACACTAGAAACTCTAAGAAGGAGAAAAACAAGCCACTTACAGAGGCGGCGGTAACACAAAAGTCAGATATTGACCAATTTAAGGATTTAAGTTCTAAACTTGAAAATAAATCATCAACGAATGTTGCTAATCTGGAAGTGGATGAACTAAAAGACGACTTTGATGGGGACGATGTTGATATGGATAGAGATTGGTCACTAGATGATAAAATTTCAGAAACGGATTCAAATGCGGAAGATGATAAATATAATCCTATTGATGACGGGCTAATATTTCCTTGTCCCATTTGTAAGCGTACGTATCGTAGCAAGAAAAGTTTGCAGAAACACAACTACGGTGTTCACAACCCAAATAAACGTCCCACCAAGCGTAAAGAACCCAAAACTAAACATAAATGTGATGAGTGCGATGAAGTATTTCCTTCTGAACGTAATTTGGCATCCCACAAATGGAAACATACCGGTATAATTTGCGATGTTTGTGGCAAAACTTTTACACAACCCGGTAATTTGATGCGTCACAAAATCCGTCATACTGGCATTAAAGCCTTCAAATGTAAAGAATGTGAAATGGACTTCTTTACGGATAAAGAGCTTAAAGCGCATATGATTCGGCATACGGGTCTTATGCCGTATATATGTGAAATATGCGGAAGAAATTGTCGTGATCGTGGTGTTTTGAAAGCGCACATGAGACGTCACACGGGCGAAAGACCGGCAAAATGTGAAGTTTGCGGTAAATGTTTCTTTTCATTTCATGATCTTAATGTTCATGCCGTAGCACATAGCAGTGAAAGGCCATTTAAGTGTGATATATGTGGTTCAACATTCCAGCGCAAAAAAGCTTTGCGTATACATAAACGTATACATTCAAAGGATCGCCAACATTTGTGTAAGATATGTGGCAAGGGATTTGCCCAATCGAGTGGTCTTAATACTCATATGAGGACACACGATGCAGCTATTGAGAAAACCACCAAAAATGAATTAGCCTTGCAGGCTTTTAATGCTCCTTTATTAATGAATAGCTCTTTGAGCACACATATAGAAAACCAAACTACAAAAACGACCAGTAATTCTGAGGTTAATATACCACTGCAAGAGAGTAGCGTATTGGTTCAGTATATTTAA
Protein Sequence: MLKVAQPTGNAFRNLKCGEIFCISPVVYNVTCCLCQTKMHLDQFPSHFQIQHLTLAEESINLEELDRKRRAKLAKDASLQDNMNIKEEDPEDDPIKQEVMFVKVDDSDEDGNCLQQLLSGSENALNKSEDLEPDNDSDEDDKCLQQLLRGSEDATNDSECEEQEFQSQPQSDGDDFKVELEVEILERKPNTRNSKKEKNKPLTEAAVTQKSDIDQFKDLSSKLENKSSTNVANLEVDELKDDFDGDDVDMDRDWSLDDKISETDSNAEDDKYNPIDDGLIFPCPICKRTYRSKKSLQKHNYGVHNPNKRPTKRKEPKTKHKCDECDEVFPSERNLASHKWKHTGIICDVCGKTFTQPGNLMRHKIRHTGIKAFKCKECEMDFFTDKELKAHMIRHTGLMPYICEICGRNCRDRGVLKAHMRRHTGERPAKCEVCGKCFFSFHDLNVHAVAHSSERPFKCDICGSTFQRKKALRIHKRIHSKDRQHLCKICGKGFAQSSGLNTHMRTHDAAIEKTTKNELALQAFNAPLLMNSSLSTHIENQTTKTTSNSEVNIPLQESSVLVQYI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -