Basic Information

Insect: Stomorhina lunata
Gene Symbol: -
Assembly: GCA_933228635.1
Location: CAKOFY010003624.1:1640891-1645921[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.01 0.69 11.0 0.2 3 23 32 52 30 52 0.96

2 17 0.0089 0.6 11.2 2.0 1 23 58 81 58 81 0.95

3 17 2.2 1.5e+02 3.6 0.2 6 23 89 108 85 108 0.82

4 17 0.0027 0.18 12.8 0.2 1 21 116 136 116 137 0.95

5 17 6.6e-06 0.00045 21.0 0.9 1 23 145 167 145 167 0.97

6 17 0.00014 0.0096 16.8 3.5 1 23 173 195 173 195 0.98

7 17 8.9e-05 0.006 17.5 1.3 1 23 201 223 201 223 0.95

8 17 1.1 75 4.6 1.9 2 21 230 249 229 250 0.94

9 17 0.56 38 5.5 0.2 2 23 695 717 694 717 0.94

10 17 0.61 41 5.4 0.7 1 10 741 750 741 763 0.75

11 17 0.53 36 5.6 1.6 1 23 771 795 771 795 0.90

12 17 10 6.7e+02 1.6 0.1 3 23 801 822 801 822 0.85

13 17 0.16 11 7.2 0.3 2 21 835 854 834 855 0.91

14 17 0.00025 0.017 16.1 0.9 1 23 863 885 863 885 0.98

15 17 1.3e-05 0.00088 20.1 2.5 1 23 891 914 891 914 0.97

16 17 3.9e-05 0.0026 18.6 1.1 1 23 920 942 920 942 0.98

17 17 0.00051 0.034 15.1 1.1 1 21 948 968 948 969 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.01	0.69	11.0	0.2	3	23	32	52	30	52	0.96
2	17	0.0089	0.6	11.2	2.0	1	23	58	81	58	81	0.95
3	17	2.2	1.5e+02	3.6	0.2	6	23	89	108	85	108	0.82
4	17	0.0027	0.18	12.8	0.2	1	21	116	136	116	137	0.95
5	17	6.6e-06	0.00045	21.0	0.9	1	23	145	167	145	167	0.97
6	17	0.00014	0.0096	16.8	3.5	1	23	173	195	173	195	0.98
7	17	8.9e-05	0.006	17.5	1.3	1	23	201	223	201	223	0.95
8	17	1.1	75	4.6	1.9	2	21	230	249	229	250	0.94
9	17	0.56	38	5.5	0.2	2	23	695	717	694	717	0.94
10	17	0.61	41	5.4	0.7	1	10	741	750	741	763	0.75
11	17	0.53	36	5.6	1.6	1	23	771	795	771	795	0.90
12	17	10	6.7e+02	1.6	0.1	3	23	801	822	801	822	0.85
13	17	0.16	11	7.2	0.3	2	21	835	854	834	855	0.91
14	17	0.00025	0.017	16.1	0.9	1	23	863	885	863	885	0.98
15	17	1.3e-05	0.00088	20.1	2.5	1	23	891	914	891	914	0.97
16	17	3.9e-05	0.0026	18.6	1.1	1	23	920	942	920	942	0.98
17	17	0.00051	0.034	15.1	1.1	1	21	948	968	948	969	0.95

Sequence Information

Coding Sequence: ATGGCCGACGATACCCCCGCCGCCTCTACATCGGCTGCAGCACAAGAAGCCATGCTGGTTAAACTCTCTACAGACGGTATACCCAAACTTTTCTGTCCCATCTGCAACAAGGCCCTAGTATCTTTAACTGGATATGTGAAGCATGTCAAGAAGCATGAACCTCCCGGTGGCTTTATATGTCGCTATTGTGAGGCTCGCTTCTGTTCCGACGAAGAATTGAAAAAACATCGCGAATCTGAACATACCACCATAGCATGCCGTCTCTGCACAGATGTCACGTTCATCAATGAAACCGATTATCGTAATCACATACGTGATGTTCACAAGGGAGTGGATCGAGAAATGTTTACTTGTGAAAAGTGTGGAGCTACGTATAAGACTATTGATCCCTATCGCCGACATATGGAGAATGAGTGTGGAAAGGTGAAGCCCTTCAAATGTGACAAATGTCCGTTGGCGTTTGTAACGAAATATAATTTGAAGCAACATCTCGAAAATCATTCGGGAGAACTGAAATTCTGTTGCAGCTATTGTGGTAGGAATTTTAAGCAGAAGGCACGTTTGGTGGAGCATGAAAGGACGCATACGGGGGAGAAGCCATATAAATGTGATGTTTGTGGAAAAAGTTTTTCGCATCGAGAAAGTATCGTTACACATTCCTCTATTCATACCGGTATACGACTGGTAGAGTGTAAAGCCTGTAACTCTCGATTTTCCTGCTATTCTAATCTTATAAAACATCGTCGTAATCGTCCCGATACTTGTGGTTTACCTCAATACGATCCACCTCGAAATCGGATTAGGAAACATACTTCCAGAATTCCCGCCACCTTGAATCCCACTTCTGAAATTAAAGTGGTCAATGTTAATAAAGTTATTAAGCCGGACGATAAAGTGAAAATAGCGGCCATGAAAAAAGAATCTCCAGAAAAGACAGCTGCTCCAAAAGCAGTCAAGGTTAAACAAACAAAACCCACAGCTCGAAAACGTACTGGAGGTCCAAGACCTCAAACCGAAGTTCAAGTGCCAAATCTTCGCAAGAGAACTCCCCGGAAAAAGATTGTAGATTCTGAACCAGAAGATGAAGAGCAAAAAGTTGATTATTTTCATGAAGAAGACGATGATGACGAGGATGAATACCTTCCGGTTAAGCATAAGCAAAAAACTGATCTTAAAATTCAAGAAGAAGAGGAGTTTAGCATACCACCACCGGAAATTGTAATGACTGATAAACCTTTGCAGCACCAGACCAACACTCAATGGTCAGATGATAGTGAGGATGAGTATGTGCCCGATTTTGAGCCAGCTGATTCAGATTCCGATGAAGATGATAAACCTCTTAAGGACTTCAAAATACCTCTTACCTCAAGCGCCATTAAAAAGGAAAACTCCGACGAAGATGAGGATGAAGAGGAGAACATTACCACAAATATACAAATAGAACCTCTGGGAGAGTTTGAGTATACACCTCTGGAGGATAACTACTCGGCAGATGTGAAGTATGAAGATGAAGAAGATAATTTATTTGATGAAAAAGATCGTATTCTTGAGCATTTGTTAAATGAAAATGATTATACCCAAATTACGGAGGCAATGGTGGAAAAGGACTCAAATCAAACCACCAGAAAGGGAGGTAAAACAAAATCAAAGAACCGGGACTCAGAGGACATTTTGAAGGAAACTGAAATGGCTTATATTAAGTATGAGGATAGTGACGAAACGGAGGATCCCGAAGAGGATATTTTAGATGAGAAACCTGAGGTAACTCTCAATAAAGCTTCTAAAGATGACATTAGGGATAGCTATGTCTTAATAGAAGATATTAGAAATTGTTTCCCGGCCTTAAATGAAGTCACCACTATAAAAGTGCCTCGTAATTTTCAACCTTTCTTTTCAAAATCTGAAGTTGTTAAAAGATTCATCAAGAAACGTGGCAAATATCGTCCCAGAGGCAAGTATCGCCCCAGAGCTGAACCCGCCTCCGATGATGAGGGCAAATCTGGTAAAGCTTGTCGTTTAGCTTCCATTTCGGCCAAACAATTGAGAGAACGTTTGAGACTAAAAAAACGCGATAGATCTTGGCAATGTCCCGATTGCATAAAAATCTATTATATGCGTAAACCTTATGAAAAACATTTACGAGATGATCACAAGAAATCGGATGATTTTATCAAGGATATATTCAAGAATGATATTGAGGAAATAAAAACCGATGATGTCTTCAAATGTCATGTTTGTGATAAAATCTATTTAATGGAAAAACGTCTTATATCTCATATACCCAAACATGGACCAGAGGGTAATTTAATCCACAAATGTCCCTGTTATTGTAATTTATATTTCGCAACACGTGAAGAGGCTGTGGCCCATGCCCAGGATAAGCATAAGCAATTGTTGTGGTGTGAAATATGTGACAAATTTATGATGGGCGTTGATGCACTCAAGTCACACAAGGCTCGTATTCACGGTGGCATGAAAGAGTACAAGAGTAATCGTAATTTGGTGTGCATGAAGTGTGGTAAGAAGTTTTTGGGTCGTACTCAGCTAACGGATCACGAACGTTCAGATTGCGGCCGTTTGCCTTTGTATCAGTGCCAGGAATGTGGTAAATGTTTAACCACGGCTGGCATCCTTAAAACACACATGTTATTGCATCAGGATGCCAGACCCTATCAATGCGATAAATGTGGTAAAACTTTCAAGATTAAAGCTCAATATAAGACCCATATTAAATATTCTCACACGGAGGAAAAGCGCTTTAAGTGCCATCTTTGTCCCAAAGCGTATCCTTATCGTGAGAGTCTTTTGACCCATATGTCGGTACACACAGGCATTAAACGTTTTATGTGCAATGGTTGTGGCAAACGCTTCACTTGTGTTTCTAATCTTCAGGCTCATCGTAAGGTACAAGCTGAAACTTGTGGTCTTTTACCCTTAAATGCTAAGGCCACCCAATATATGGGTGTACAAAAGGGTAATCTTTTAATGGGAGCTAAACCTGAACCAGGTTTAGATTATGTTGAAACCAGAACCTTTGTGGCTAAAGACGTTATAACTCACGACATGCCTATGGCCCAAGAACACAGTACTCAAGGCAGAAATATTCCAGCTGATAACTCTATGAGCGATGGCATACCTCTCAATATTGTAACCTCGGGTTCTGAAATCATACTTATGTATAATAATAGAGCATAA
Protein Sequence: MADDTPAASTSAAAQEAMLVKLSTDGIPKLFCPICNKALVSLTGYVKHVKKHEPPGGFICRYCEARFCSDEELKKHRESEHTTIACRLCTDVTFINETDYRNHIRDVHKGVDREMFTCEKCGATYKTIDPYRRHMENECGKVKPFKCDKCPLAFVTKYNLKQHLENHSGELKFCCSYCGRNFKQKARLVEHERTHTGEKPYKCDVCGKSFSHRESIVTHSSIHTGIRLVECKACNSRFSCYSNLIKHRRNRPDTCGLPQYDPPRNRIRKHTSRIPATLNPTSEIKVVNVNKVIKPDDKVKIAAMKKESPEKTAAPKAVKVKQTKPTARKRTGGPRPQTEVQVPNLRKRTPRKKIVDSEPEDEEQKVDYFHEEDDDDEDEYLPVKHKQKTDLKIQEEEEFSIPPPEIVMTDKPLQHQTNTQWSDDSEDEYVPDFEPADSDSDEDDKPLKDFKIPLTSSAIKKENSDEDEDEEENITTNIQIEPLGEFEYTPLEDNYSADVKYEDEEDNLFDEKDRILEHLLNENDYTQITEAMVEKDSNQTTRKGGKTKSKNRDSEDILKETEMAYIKYEDSDETEDPEEDILDEKPEVTLNKASKDDIRDSYVLIEDIRNCFPALNEVTTIKVPRNFQPFFSKSEVVKRFIKKRGKYRPRGKYRPRAEPASDDEGKSGKACRLASISAKQLRERLRLKKRDRSWQCPDCIKIYYMRKPYEKHLRDDHKKSDDFIKDIFKNDIEEIKTDDVFKCHVCDKIYLMEKRLISHIPKHGPEGNLIHKCPCYCNLYFATREEAVAHAQDKHKQLLWCEICDKFMMGVDALKSHKARIHGGMKEYKSNRNLVCMKCGKKFLGRTQLTDHERSDCGRLPLYQCQECGKCLTTAGILKTHMLLHQDARPYQCDKCGKTFKIKAQYKTHIKYSHTEEKRFKCHLCPKAYPYRESLLTHMSVHTGIKRFMCNGCGKRFTCVSNLQAHRKVQAETCGLLPLNAKATQYMGVQKGNLLMGAKPEPGLDYVETRTFVAKDVITHDMPMAQEHSTQGRNIPADNSMSDGIPLNIVTSGSEIILMYNNRA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01261217;
90% Identity: -
80% Identity: -